Pregenerated sensors for CALCA (Homo sapiens)
Ensembl gene IDs: ENSG00000110680Ensembl transcript IDs: ENST00000331587.9, ENST00000361010.7, ENST00000396372.2, ENST00000469608.5, ENST00000486207.5, ENST00000494746.1
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGATTCTCTTCCAACCTGTGAGTCCTGCTCTCTTTCCTCCCATCTaGAGTTTGAGACATCCTCTGCCACAAGGAAAGCCACCAATACCA | + |
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Preference number: 1 (lower is better) Translates to: VILFQPVSPALFPPI*SLRHPLPQGKPPIP Trigger: TGGTATTGGTGGCTTTCCTTGTGGCAGAGGATGTCTCAAACTTCAGATGGGAGGAAAGAGAGCAGGACTCACAGGTTGGAAGAGAATCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| 3UTR GCA 90 bp | TTTTCTGGTATTTTCCCAGGTGATTCTCTTCCAACCTGTGAGTCCTaGTCTCTTTCCTCCCATCTGAAGTTTGAGACATCCTCTGCCACA | + |
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Preference number: 1 (lower is better) Translates to: FSGIFPGDSLPTCES*SLSSHLKFETSSAT Trigger: TGTGGCAGAGGATGTCTCAAACTTCAGATGGGAGGAAAGAGAGCAGGACTCACAGGTTGGAAGAGAATCACCTGGGAAAATACCAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| 3UTR CCA 90 bp | GATAGTTTTCAGTATCAAGAAGGATGCCTATATGTATGTCTTCCATaGAGCCTTTCCTACAAATTGCTTTCATTACACATTAAAAGGAGT | + |
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Preference number: 1 (lower is better) Translates to: DSFQYQEGCLYVCLP*SLSYKLLSLHIKRS Trigger: ACTCCTTTTAATGTGTAATGAAAGCAATTTGTAGGAAAGGCTCCATGGAAGACATACATATAGGCATCCTTCTTGATACTGAAAACTATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR GCA 90 bp | TTTCATGTCCCCCTGAGGTTTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACTGCACAATAGGTAACTaGAATGAGCTTGTTCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: FHVPLRFSRATNVNRVADCTIGN*NELVLH Trigger: ATGCAGAACAAGCTCATTGCAGTTACCTATTGTGCA...GTCAGCCACCCTATTGACATTGGTGGCTCTGCTAAACCTCAGGGGGACATGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR GCA 90 bp | TTTCATGTCCCCCTGAGGTTTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACCAGTATCAAGAAGGATaGCTATATGTATGTCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: FHVPLRFSRATNVNRVADQYQEG*LYVCLP Trigger: TGGAAGACATACATATAGGCATCCTTCTTGATACTG...GTCAGCCACCCTATTGACATTGGTGGCTCTGCTAAACCTCAGGGGGACATGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR CCA 90 bp | TTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCAATGTCAATAGGGTaGCTGACGGGGCCTAGATTT | + |
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Preference number: 2 (lower is better) Translates to: FFKQILLSRHSITMCPQMPMSIG*LTGPRF Trigger: AAATCTAGGCCCCGTCAGCCACCCTATTGACATTGG...CATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR TCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTATGCCCAAGAGGCAGTaGTTTCATGTCCCCCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: SIDISLNKYFCQGTALPCMPKRQ*FHVPLR Trigger: CCTCAGGGGGACATGAAATCACTGCCTCTTGGGCAT...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR TCA 90 bp | TTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGTACCAGATAAGCCAATaGGACATGCTGTCAGATTTA | + |
|
Preference number: 2 (lower is better) Translates to: FFKQILLSRHSITMCPQMYQISQ*DMLSDL Trigger: TAAATCTGACAGCATGTCTCATTGGCTTATCTGGTA...CATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR GCA 90 bp | TTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCAGTATCAAGAAGGATaGCTATATGTATGTCTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: FFKQILLSRHSITMCPQMQYQEG*LYVCLP Trigger: TGGAAGACATACATATAGGCATCCTTCTTGATACTG...CATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR TCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTTACCAGATAAGCCAATaGGACATGCTGTCAGATTTA | + |
|
Preference number: 2 (lower is better) Translates to: SIDISLNKYFCQGTALPCYQISQ*DMLSDL Trigger: TAAATCTGACAGCATGTCTCATTGGCTTATCTGGTA...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR-3UTR GCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTTGCACAATAGGTAACTaGAATGAGCTTGTTCTGCAT | + |
|
Preference number: 2 (lower is better) Translates to: SIDISLNKYFCQGTALPCCTIGN*NELVLH Trigger: ATGCAGAACAAGCTCATTGCAGTTACCTATTGTGCA...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR GCA 72 bp | ATTTTCCCAGGTGATTCTCTTCCAACCTGTGAGTCCTaGTCTCTTTCCTCCCATCTGAAGTTTGAGACATCC | + |
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Preference number: 3 (lower is better) Translates to: IFPGDSLPTCES*SLSSHLKFETS Trigger: GGATGTCTCAAACTTCAGATGGGAGGAAAGAGAGCAGGACTCACAGGTTGGAAGAGAATCACCTGGGAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| 3UTR CCA 72 bp | CAGTATCAAGAAGGATGCCTATATGTATGTCTTCCATaGAGCCTTTCCTACAAATTGCTTTCATTACACATT | + |
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Preference number: 3 (lower is better) Translates to: QYQEGCLYVCLP*SLSYKLLSLHI Trigger: AATGTGTAATGAAAGCAATTTGTAGGAAAGGCTCCATGGAAGACATACATATAGGCATCCTTCTTGATACTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR CCA 90 bp | GAAGCAGGACAGAGGAGCTCTGATGACATCTCTGGGGGACTCAAAGCGGCCCTCTGGCGGGAGGTGGCTTaGATCAGAGGCGGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EAGQRSSDDISGGLKAALWREVA*IRGGGS Trigger: GCTGCCACCGCCTCTGATCCAAGCCACCTCCCGCCA...GAGGGCCGCTTTGAGTCCCCCAGAGATGTCATCAGAGCTCCTCTGTCCTGCTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | GTCCCCCTGAGGTTTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCATGCCCAAGAGGCAGTaGTTTCATGTCCCCCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VPLRFSRATNVNRVADGAMPKRQ*FHVPLR Trigger: CCTCAGGGGGACATGAAATCACTGCCTCTTGGGCAT...GGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAAACCTCAGGGGGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR TCA 90 bp | TTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCTAGATTTGCTACCTCTCCAGGGCAGACCTaGATGGTGCTGCATGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LAEPPMSIGWLTGPRFATSPGQT*MVLHGG Trigger: GCCTCCATGCAGCACCATTCAGGTCTGCCCTGGAGA...GGTAGCAAATCTAGGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR CCA 90 bp | CAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGTGGCGGGAGGTGGCTTaGATCAGAGGCGGTGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QILLSRHSITMCPQMPKRWREVA*IRGGGS Trigger: GCTGCCACCGCCTCTGATCCAAGCCACCTCCCGCCA...CCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361010.7 |
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| CDS-3UTR CCA 90 bp | TGCCACAAGGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAATGGGGCTGTCCAGGCTaGAGCCCTCTCTCTCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: CHKESHQYQPKEPPERNQWGCPG*SPLSLA Trigger: AGCAAGAGAGAGAGGGCTCCAGCCTGGACAGCCCCA...TTGGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCCTTGTGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR CCA 90 bp | GTCCCCCTGAGGTTTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCCCAATGTCAATAGGGTaGCTGACGGGGCCTAGATTT | + |
|
Preference number: 4 (lower is better) Translates to: VPLRFSRATNVNRVADGAPMSIG*LTGPRF Trigger: AAATCTAGGCCCCGTCAGCCACCCTATTGACATTGG...GGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAAACCTCAGGGGGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR CCA 90 bp | ACAAGGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACCCATGACACCTCTCTaGCGGGAGGTGGCTTGGATC | + |
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Preference number: 4 (lower is better) Translates to: TRKATNTSPKSHQRGTKPPMTPL*REVAWI Trigger: GATCCAAGCCACCTCCCGCCAGAGAGGTGTCATGGG...TGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCCTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR CCA 90 bp | AATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGCATCACCTGGCGGGAGGTaGCTTGGATCAGAGGCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: NTSVKAQHYHVSPDAQEASPGGR*LGSEAV Trigger: CACCGCCTCTGATCCAAGCCACCTCCCGCCAGGTGA...TGCCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361010.7 |
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| CDS-3UTR CCA 90 bp | CCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAATCTCGGGGCTCACCTaGCGGGAGGTGGCTTGGATC | + |
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Preference number: 4 (lower is better) Translates to: PAQRATREEPNHMHQVIGISGLT*REVAWI Trigger: GATCCAAGCCACCTCCCGCCAGGTGAGCCCCGAGAT...TCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396372.2 |
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| CDS-3UTR TCA 90 bp | GGAGCTCTGATGACATCTCTGGGGGACTCAAAGCGGCCCTCATTTTCTGGTATTTGGGGCATGCTAACATaGGGGCGATGGTCTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: GALMTSLGDSKRPSFSGIWGMLT*GRWSLS Trigger: GGAGAGAGACCATCGCCCTCATGTTAGCATGCCCCA...AATACCAGAAAATGAGGGCCGCTTTGAGTCCCCCAGAGATGTCATCAGAGCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | TTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCTAGATTTGCTACCATGCCCAAGAGGCAGTaGTTTCATGTCCCCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: LAEPPMSIGWLTGPRFATMPKRQ*FHVPLR Trigger: CCTCAGGGGGACATGAAATCACTGCCTCTTGGGCAT...GGTAGCAAATCTAGGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | CCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAGTGCTGCATGGAGGCTaGCTGCCTGCAACAGGACCA | + |
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Preference number: 4 (lower is better) Translates to: PAQRATREEPNHMHQVIGVLHGG*LPATGP Trigger: TGGTCCTGTTGCAGGCAGGCAGCCTCCATGCAGCAC...TCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | CAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGGTGCTGCATGGAGGCTaGCTGCCTGCAACAGGACCA | + |
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Preference number: 4 (lower is better) Translates to: QILLSRHSITMCPQMPKRVLHGG*LPATGP Trigger: TGGTCCTGTTGCAGGCAGGCAGCCTCCATGCAGCAC...CCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR TCA 90 bp | TTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCTAGATTTGCTACCACTTTTGGAAGCCCATaGCACCTCTCTGAGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LAEPPMSIGWLTGPRFATTFGSP*HLSEPG Trigger: TCCTGGCTCAGAGAGGTGTCATGGGCTTCCAAAAGT...GGTAGCAAATCTAGGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000361010.7 |
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| CDS-3UTR CCA 90 bp | ACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAAGGGCTCTCTGGCGGGAGGTaGCTTGGATCAGAGGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: TREEPNHMHQVIGRMQEGLSGGR*LGSEAV Trigger: CACCGCCTCTGATCCAAGCCACCTCCCGCCAGAGAG...CCCTTCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | CACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAAGGTCTCCAGGGCAGACCTaGATGGTGCTGCATGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: HQRGTKPHASSYRKDARRSPGQT*MVLHGG Trigger: GCCTCCATGCAGCACCATTCAGGTCTGCCCTGGAGA...CCTTCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR TCA 90 bp | AGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGATCTCCAGGGCAGACCTaGATGGTGCTGCATGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: SHQRGTKPHASSYRKDARSPGQT*MVLHGG Trigger: GCCTCCATGCAGCACCATTCAGGTCTGCCCTGGAGA...TCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR TCA 90 bp | TCTGCCACAAGGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCACGTGTGAAACTTGTTaGAGTCCTGCGTGTATGTGC | + |
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Preference number: 4 (lower is better) Translates to: SATRKATNTSPKSHQRGTTCETC*SPACMC Trigger: GCACATACACGCAGGACTTCAACAAGTTTCACACGT...GGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCCTTGTGGCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | TTTCATGTCCCCCTGAGGTTTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGATTTCATGTCCCCCTaGGGTTTAGCAGAGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: FHVPLRFSRATNVNRVADDFMSP*GLAEPP Trigger: TGGTGGCTCTGCTAAACCTCAGGGGGACATGAAATC...GTCAGCCACCCTATTGACATTGGTGGCTCTGCTAAACCTCAGGGGGACATGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | AAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAGTGCTGCATGGAGGCTaGCTGCCTGCAACAGGACCA | + |
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Preference number: 4 (lower is better) Translates to: KSHQRGTKPHASSYRKDAVLHGG*LPATGP Trigger: TGGTCCTGTTGCAGGCAGGCAGCCTCCATGCAGCAC...TGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | AAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATGCTCCAACCCCAATTaGAGTTTGGGGGAACGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KATNTSPKSHQRGTKPHACSNPN*SLGERV Trigger: CACACGTTCCCCCAAACTGCAATTGGGGTTGGAGCA...TGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | ACAAGGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCAGTTTGGGGGAACGTGTaGAACTTGTTGAAGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: TRKATNTSPKSHQRGTKPVWGNV*NLLKSC Trigger: GCAGGACTTCAACAAGTTTCACACGTTCCCCCAAAC...TGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCCTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | CAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGTGGGGCATGCTAACATaGGGGCGATGGTCTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QRATREEPNHMHQVIGRMWGMLT*GRWSLS Trigger: GGAGAGAGACCATCGCCCTCATGTTAGCATGCCCCA...CATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR TCA 90 bp | TGCCACAAGGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAACTCTTTCCTCCCATCTaGAGTTTGAGACATCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: CHKESHQYQPKEPPERNQLFPPI*SLRHPL Trigger: CAGAGGATGTCTCAAACTTCAGATGGGAGGAAAGAG...TTGGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCCTTGTGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | AATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGCACTCTCTTCTGGGCAATaGTTCTGGAGCCCTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: NTSVKAQHYHVSPDAQEALSSGQ*FWSPLS Trigger: AGAGAGAGGGCTCCAGAATCATTGCCCAGAAGAGAG...TGCCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | AGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAGAGCCCTCTCTCTCTTaGTCCTGCTCCAGCTCACTG | + |
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Preference number: 4 (lower is better) Translates to: SHQRGTKPHASSYRKDAREPSLS*SCSSSL Trigger: CAGTGAGCTGGAGCAGGAGCAAGAGAGAGAGGGCTC...TCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR CCA 90 bp | TCTGCCACAAGGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCCTCTCTCCAAGTCGCTaGACATATCCCTTTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SATRKATNTSPKSHQRGTLSPSR*TYPFSF Trigger: GAAAGAAAAGGGATATGTCCAGCGACTTGGAGAGAG...GGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCCTTGTGGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | GCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGCTCCCATCTGAAGTTTaGGACATCCTCTGCCACAAG | + |
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Preference number: 4 (lower is better) Translates to: AQRATREEPNHMHQVIGRLPSEV*DILCHK Trigger: CTTGTGGCAGAGGATGTCTCAAACTTCAGATGGGAG...CCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR CCA 90 bp | AATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGCACCAATGTCAATAGGGTaGCTGACGGGGCCTAGATTT | + |
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Preference number: 4 (lower is better) Translates to: NTSVKAQHYHVSPDAQEAPMSIG*LTGPRF Trigger: AAATCTAGGCCCCGTCAGCCACCCTATTGACATTGG...TGCCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR TCA 90 bp | CCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATACTTTTGGAAGCCCATaGCACCTCTCTGAGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: PKSHQRGTKPHASSYRKDTFGSP*HLSEPG Trigger: TCCTGGCTCAGAGAGGTGTCATGGGCTTCCAAAAGT...ATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | CCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAACTTGTTGAAGTCCTaGGTGTATGTGCCCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: PAQRATREEPNHMHQVIGNLLKS*VYVPSM Trigger: CATGCTGGGCACATACACGCAGGACTTCAACAAGTT...TCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | CACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAAGGTGCTCCAACCCCAATTaGAGTTTGGGGGAACGTGTG | + |
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Preference number: 4 (lower is better) Translates to: HQRGTKPHASSYRKDARRCSNPN*SLGERV Trigger: CACACGTTCCCCCAAACTGCAATTGGGGTTGGAGCA...CCTTCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | TCCTCCCATCTGAAGTTTGAGACATCCTCTGCCACAAGGAAAGCCACCAATACCCCTTTTCTTTCCAGGTaGTCCAACCCCAATTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SSHLKFETSSATRKATNTPFLSR*SNPNCS Trigger: ACTGCAATTGGGGTTGGAGCACCTGGAAAGAAAAGG...GGTATTGGTGGCTTTCCTTGTGGCAGAGGATGTCTCAAACTTCAGATGGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR GCA 90 bp | AGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGACCAACCTGTGAGTCCTaGTCTCTTTCCTCCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: SHQRGTKPHASSYRKDARPTCES*SLSSHL Trigger: CAGATGGGAGGAAAGAGAGCAGGACTCACAGGTTGG...TCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR TCA 90 bp | AGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAGTTTGGGGGAACGTGTaGAACTTGTTGAAGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SHQRGTKPHASSYRKDARVWGNV*NLLKSC Trigger: GCAGGACTTCAACAAGTTTCACACGTTCCCCCAAAC...TCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | TTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCTAGATTTGCTACCTGCACAATAGGTAACTaGAATGAGCTTGTTCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: LAEPPMSIGWLTGPRFATCTIGN*NELVLH Trigger: ATGCAGAACAAGCTCATTGCAGTTACCTATTGTGCA...GGTAGCAAATCTAGGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | AAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAACTTGTTGAAGTCCTaGGTGTATGTGCCCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: KSHQRGTKPHASSYRKDANLLKS*VYVPSM Trigger: CATGCTGGGCACATACACGCAGGACTTCAACAAGTT...TGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR GCA 90 bp | ACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAAGGGCCTTTTCTTTCCAGGTaGTCCAACCCCAATTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: TREEPNHMHQVIGRMQEGPFLSR*SNPNCS Trigger: ACTGCAATTGGGGTTGGAGCACCTGGAAAGAAAAGG...CCCTTCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR CCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTATCTCGGGGCTCACCTaGCGGGAGGTGGCTTGGATC | + |
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Preference number: 4 (lower is better) Translates to: SIDISLNKYFCQGTALPCISGLT*REVAWI Trigger: GATCCAAGCCACCTCCCGCCAGGTGAGCCCCGAGAT...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361010.7 |
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| CDS-3UTR TCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTTCTCCAGGGCAGACCTaGATGGTGCTGCATGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: SIDISLNKYFCQGTALPCSPGQT*MVLHGG Trigger: GCCTCCATGCAGCACCATTCAGGTCTGCCCTGGAGA...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR TCA 90 bp | AATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGCATACCAGATAAGCCAATaGGACATGCTGTCAGATTTA | + |
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Preference number: 4 (lower is better) Translates to: NTSVKAQHYHVSPDAQEAYQISQ*DMLSDL Trigger: TAAATCTGACAGCATGTCTCATTGGCTTATCTGGTA...TGCCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR TCA 90 bp | GACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCGATTTCATGTCCCCCTaGGGTTTAGCAGAGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: DISLNKYFCQGTALPCVPDFMSP*GLAEPP Trigger: TGGTGGCTCTGCTAAACCTCAGGGGGACATGAAATC...GGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTGTGCTGCATGGAGGCTaGCTGCCTGCAACAGGACCA | + |
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Preference number: 4 (lower is better) Translates to: SIDISLNKYFCQGTALPCVLHGG*LPATGP Trigger: TGGTCCTGTTGCAGGCAGGCAGCCTCCATGCAGCAC...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR CCA 90 bp | AGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGACTCTCTCCAAGTCGCTaGACATATCCCTTTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SHQRGTKPHASSYRKDARLSPSR*TYPFSF Trigger: GAAAGAAAAGGGATATGTCCAGCGACTTGGAGAGAG...TCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR TCA 90 bp | GCCTATATGTATGTCTTCCATGGAGCCTTTCCTACAAATTGCTTTCATTACACACTCTCTTCTGGGCAATaGTTCTGGAGCCCTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: AYMYVFHGAFPTNCFHYTLSSGQ*FWSPLS Trigger: AGAGAGAGGGCTCCAGAATCATTGCCCAGAAGAGAG...TGTGTAATGAAAGCAATTTGTAGGAAAGGCTCCATGGAAGACATACATATAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | CAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGCAGTATCAAGAAGGATaGCTATATGTATGTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: QILLSRHSITMCPQMPKRQYQEG*LYVCLP Trigger: TGGAAGACATACATATAGGCATCCTTCTTGATACTG...CCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR TCA 90 bp | GCCTATATGTATGTCTTCCATGGAGCCTTTCCTACAAATTGCTTTCATTACACATACCAGATAAGCCAATaGGACATGCTGTCAGATTTA | + |
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Preference number: 4 (lower is better) Translates to: AYMYVFHGAFPTNCFHYTYQISQ*DMLSDL Trigger: TAAATCTGACAGCATGTCTCATTGGCTTATCTGGTA...TGTGTAATGAAAGCAATTTGTAGGAAAGGCTCCATGGAAGACATACATATAGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR GCA 90 bp | AGCATTGACATTTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTCAGTATCAAGAAGGATaGCTATATGTATGTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: SIDISLNKYFCQGTALPCQYQEG*LYVCLP Trigger: TGGAAGACATACATATAGGCATCCTTCTTGATACTG...ACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAAATGTCAATGCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| 3UTR CAA 72 bp | CTATATGTATGTCTTCCATGGAGCCTTTCCTACAAATaGCTTTCATTACACATTAAAAGGAGTTCAGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: LYVCLPWSLSYK*LSLHIKRSSAL Trigger: TAAAGCTGAACTCCTTTTAATGTGTAATGAAAGCAATTTGTAGGAAAGGCTCCATGGAAGACATACATATAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR CAA 90 bp | GGAAAGCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGAAGCGGCGGCGACACTaGGGCTGGGCAGTGTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GKPPIPAQRATREEPNHMKRRRH*GWAVSL Trigger: CAGAGACACTGCCCAGCCCAAGTGTCGCCGCCGCTT...CATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGGTATTGGTGGCTTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR CAA 90 bp | AGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGCTGGCGGGAGGTGGCTaGGATCAGAGGCGGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SPKSHQRGTKPHASSYRKLAGGG*DQRRWQ Trigger: CTGCCACCGCCTCTGATCCAAGCCACCTCCCGCCAG...CTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS-3UTR CAA 90 bp | GTCCCCCTGAGGTTTAGCAGAGCCACCAATGTCAATAGGGTGGCTGACGGGGCCTTTATTGTGACCTTCTaGAGTCATTCAGCTGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: VPLRFSRATNVNRVADGAFIVTF*SHSAAQ Trigger: CTGAGCAGCTGAATGACTCAAGAAGGTCACAATAAA...GGCCCCGTCAGCCACCCTATTGACATTGGTGGCTCTGCTAAACCTCAGGGGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS-3UTR CAA 90 bp | TTCTTTAAACAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCTGGCGGGAGGTGGCTaGGATCAGAGGCGGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: FFKQILLSRHSITMCPQMLAGGG*DQRRWQ Trigger: CTGCCACCGCCTCTGATCCAAGCCACCTCCCGCCAG...CATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTGTTTAAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000361010.7 |
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| CDS TCA 90 bp | TTCTTTCCAGGTGCTCCAACCCCAATTGCAGTTTGGGGGAACGTGTaGAACTTGTTGAAGTCCTGCGTGTATGTGCCCAGCATGCAAGTA | + |
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Preference number: 5 (lower is better) Translates to: FFPGAPTPIAVWGNV*NLLKSCVYVPSMQV Trigger: TACTTGCATGCTGGGCACATACACGCAGGACTTCAACAAGTTTCACACGTTCCCCCAAACTGCAATTGGGGTTGGAGCACCTGGAAAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000331587.9 ENST00000396372.2 ENST00000469608.5 ENST00000494746.1 |
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| CDS-3UTR CAA 90 bp | AGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGTGCTCCAACCCCAATaGCAGTTTGGGGGAACGTGT | + |
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Preference number: 5 (lower is better) Translates to: RATREEPNHMHQVIGRMQVLQPQ*QFGGTC Trigger: ACACGTTCCCCCAAACTGCAATTGGGGTTGGAGCAC...TTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR CAA 90 bp | AGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGAGTGCTCCAACCCCAATaGCAGTTTGGGGGAACGTGT | + |
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Preference number: 5 (lower is better) Translates to: SHQRGTKPHASSYRKDARVLQPQ*QFGGTC Trigger: ACACGTTCCCCCAAACTGCAATTGGGGTTGGAGCAC...TCTTGCATCCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR CAA 90 bp | GCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGAACCCCAATTGCAGTTaGGGGGAACGTGTGAAACTT | + |
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Preference number: 5 (lower is better) Translates to: AQRATREEPNHMHQVIGRNPNCS*GERVKL Trigger: AAGTTTCACACGTTCCCCCAAACTGCAATTGGGGTT...CCTTCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS-3UTR CAA 90 bp | CCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAACCCCAATTGCAGTTaGGGGGAACGTGTGAAACTT | + |
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Preference number: 5 (lower is better) Translates to: PAQRATREEPNHMHQVIGNPNCS*GERVKL Trigger: AAGTTTCACACGTTCCCCCAAACTGCAATTGGGGTT...TCCTATAACTTGATGCATGTGGTTTGGTTCCTCTCTGGTGGCTCTTTGGGCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000331587.9 ENST00000396372.2 |
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| CDS TCA 90 bp | CATAGATATTCCCAGGGGTGTCAGAAAACCCAAGGTGACTCTGGATaGCTGGCTATGGAATGTGGAGCAGTAACAGCCAATCTTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: HRYSQGCQKTQGDSG*LAMECGAVTANLSC Trigger: ACAGGAAAGATTGGCTGTTACTGCTCCACATTCCATAGCCAGTCATCCAGAGTCACCTTGGGTTTTCTGACACCCCTGGGAATATCTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494746.1 |
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| CDS-3UTR CAA 90 bp | CAAATACTTCTGTCAAGGCACAGCATTACCATGTGTCCCCAGATGCCCAAGAGGTTTATTGTGACCTTCTaGAGTCATTCAGCTGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: QILLSRHSITMCPQMPKRFIVTF*SHSAAQ Trigger: CTGAGCAGCTGAATGACTCAAGAAGGTCACAATAAA...CCTCTTGGGCATCTGGGGACACATGGTAATGCTGTGCCTTGACAGAAGTATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361010.7 ENST00000486207.5 |
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| CDS CCA 72 bp | TGGCAGCGGCGGCGGCGGCGTCCAGCCAGAGCCCTGTaGAAGCGGCGGCGACACTTGGGCTGGGCAGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: WQRRRRRPARAL*KRRRHLGWAVS Trigger: AGACACTGCCCAGCCCAAGTGTCGCCGCCGCTTCCACAGGGCTCTGGCTGGACGCCGCCGCCGCCGCTGCCA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000331587.9 |
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| CDS TCA 72 bp | CCCCAATTGCAGTTTGGGGGAACGTGTGAAACTTGTTaGAGTCCTGCGTGTATGTGCCCAGCATGCAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: PQLQFGGTCETC*SPACMCPACKY Trigger: GTACTTGCATGCTGGGCACATACACGCAGGACTTCAACAAGTTTCACACGTTCCCCCAAACTGCAATTGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000331587.9 ENST00000396372.2 ENST00000469608.5 ENST00000494746.1 |
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