Pregenerated sensors for CACNA1C-IT3 (Homo sapiens)
Ensembl gene IDs: ENSG00000256721Ensembl transcript IDs: ENST00000542680.1, ENST00000646990.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGTGGCAGCTCTACTGATGAAGGCTACACTGCAGGATCCATTGACTaGGGCTGCCAGAGCCACTGGGTAGCTGGCATCCCGCAGCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SGSSTDEGYTAGSID*GCQSHWVAGIPQQG Trigger: ACCCTGCTGCGGGATGCCAGCTACCCAGTGGCTCTGGCAGCCCCAGTCAATGGATCCTGCAGTGTAGCCTTCATCAGTAGAGCTGCCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS TCA 90 bp | ACACAGTCTTGGTGTCTTGGTCCTGGCAGTGACAACATCCTTCCATaGCTATGGTTTCTCCCTCATGGTCCTCCTCCCAGCTACAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: TQSWCLGPGSDNILP*LWFLPHGPPPSYSS Trigger: GGAGCTGTAGCTGGGAGGAGGACCATGAGGGAGAAACCATAGTCATGGAAGGATGTTGTCACTGCCAGGACCAAGACACCAAGACTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS TCA 90 bp | CTGGGGCTGCCAGAGCCACTGGGTAGCTGGCATCCCGCAGCAGGGTaGTTAATCTGTATGTTCTTCCTCATAGCTGTTGTAGATACAAGC | + |
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Preference number: 5 (lower is better) Translates to: LGLPEPLGSWHPAAG*LICMFFLIAVVDTS Trigger: GCTTGTATCTACAACAGCTATGAGGAAGAACATACAGATTAATCACCCTGCTGCGGGATGCCAGCTACCCAGTGGCTCTGGCAGCCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CCA 90 bp | TACATTGTAATTTTCAGGTCACACATGCATATTAGTGCTACCTTTTaGGTGCTGGCAGTGGCAGCTCTACTGATGAAGGCTACACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: YIVIFRSHMHISATF*VLAVAALLMKATLQ Trigger: CTGCAGTGTAGCCTTCATCAGTAGAGCTGCCACTGCCAGCACCCAAAAGGTAGCACTAATATGCATGTGTGACCTGAAAATTACAATGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS GCA 72 bp | GATGAAGGCTACACTGCAGGATCCATTGACTGGGGCTaGCAGAGCCACTGGGTAGCTGGCATCCCGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: DEGYTAGSIDWG*QSHWVAGIPQQ Trigger: CTGCTGCGGGATGCCAGCTACCCAGTGGCTCTGGCAGCCCCAGTCAATGGATCCTGCAGTGTAGCCTTCATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CAA 90 bp | GGGTCTTCAACTCTAACTCAGTGCCTAGCACACAGTCTTGGTGTCTaGGTCCTGGCAGTGACAACATCCTTCCATGACTATGGTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: GSSTLTQCLAHSLGV*VLAVTTSFHDYGFS Trigger: GGAGAAACCATAGTCATGGAAGGATGTTGTCACTGCCAGGACCAAGACACCAAGACTGTGTGCTAGGCACTGAGTTAGAGTTGAAGACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CAA 90 bp | GGCAGGGCTCGGTTCCCTTTGATGATTCAGTTGTCAGTGGAATTCTaGAGGGTCTTCAACTCTAACTCAGTGCCTAGCACACAGTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: GRARFPLMIQLSVEF*RVFNSNSVPSTQSW Trigger: CCAAGACTGTGTGCTAGGCACTGAGTTAGAGTTGAAGACCCTCAAGAATTCCACTGACAACTGAATCATCAAAGGGAACCGAGCCCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CAA 72 bp | ACTCTAACTCAGTGCCTAGCACACAGTCTTGGTGTCTaGGTCCTGGCAGTGACAACATCCTTCCATGACTAT | + |
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Preference number: 6 (lower is better) Translates to: TLTQCLAHSLGV*VLAVTTSFHDY Trigger: ATAGTCATGGAAGGATGTTGTCACTGCCAGGACCAAGACACCAAGACTGTGTGCTAGGCACTGAGTTAGAGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CAA 72 bp | AACAACTGTATGTCCTTGGGCAGGGCTCGGTTCCCTTaGATGATTCAGTTGTCAGTGGAATTCTTGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: NNCMSLGRARFP*MIQLSVEFLRV Trigger: GACCCTCAAGAATTCCACTGACAACTGAATCATCAAAGGGAACCGAGCCCTGCCCAAGGACATACAGTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CAA 90 bp | AACTGTATGTCCTTGGGCAGGGCTCGGTTCCCTTTGATGATTCAGTaGTCAGTGGAATTCTTGAGGGTCTTCAACTCTAACTCAGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: NCMSLGRARFPLMIQ*SVEFLRVFNSNSVP Trigger: AGGCACTGAGTTAGAGTTGAAGACCCTCAAGAATTCCACTGACAACTGAATCATCAAAGGGAACCGAGCCCTGCCCAAGGACATACAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CAA 90 bp | GAAGAGGAAAACAACTGTATGTCCTTGGGCAGGGCTCGGTTCCCTTaGATGATTCAGTTGTCAGTGGAATTCTTGAGGGTCTTCAACTCT | + |
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Preference number: 6 (lower is better) Translates to: EEENNCMSLGRARFP*MIQLSVEFLRVFNS Trigger: AGAGTTGAAGACCCTCAAGAATTCCACTGACAACTGAATCATCAAAGGGAACCGAGCCCTGCCCAAGGACATACAGTTGTTTTCCTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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| CDS CCA 72 bp | ATTTTCAGGTCACACATGCATATTAGTGCTACCTTTTaGGTGCTGGCAGTGGCAGCTCTACTGATGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: IFRSHMHISATF*VLAVAALLMKA Trigger: AGCCTTCATCAGTAGAGCTGCCACTGCCAGCACCCAAAAGGTAGCACTAATATGCATGTGTGACCTGAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000542680.1 ENST00000646990.1 |
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