Pregenerated sensors for CACNA1C-IT2 (Homo sapiens)

Ensembl gene IDs: ENSG00000285266

Ensembl transcript IDs: ENST00000646212.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ATTCTGTGCAGTGTTTCCAGCCCAAATGCATTGCATTGTCCTCATTaGAATCCAAGCTGCCTGGTTGAAGTGTCAGCCACTCTGTGTTGG	+
Preference number: 5 (lower is better) Translates to: ILCSVSSPNALHCPH*NPSCLVEVSATLCW Trigger: CCAACACAGAGTGGCTGACACTTCAACCAGGCAGCTTGGATTGCAATGAGGACAATGCAATGCATTTGGGCTGGAAACACTGCACAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646212.1
CDS TCA 90 bp	TGTCAGCCACTCTGTGTTGGTCGTAGAGAGCTAGGAGCACCAAGATaGTGGGTAAATCTTAACAGTGACCTTTTGGGAAGATGTTTCATC	+
Preference number: 5 (lower is better) Translates to: CQPLCVGRRELGAPR*WVNLNSDLLGRCFI Trigger: GATGAAACATCTTCCCAAAAGGTCACTGTTAAGATTTACCCATCATCTTGGTGCTCCTAGCTCTCTACGACCAACACAGAGTGGCTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000646212.1
CDS TCA 90 bp	CCAAACAACCCTGTGAAGGAATTGCTTTTATCCACATTTTACCGGTaGGGAAACCAAAGCACAGAAACGTTTACTCACTTGCCCATGTTT	+
Preference number: 5 (lower is better) Translates to: PNNPVKELLLSTFYR*GNQSTETFTHLPMF Trigger: AAACATGGGCAAGTGAGTAAACGTTTCTGTGCTTTGGTTTCCTCACCGGTAAAATGTGGATAAAAGCAATTCCTTCACAGGGTTGTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000646212.1
CDS CAA 90 bp	GCCCAAATGCATTGCATTGTCCTCATTGCAATCCAAGCTGCCTGGTaGAAGTGTCAGCCACTCTGTGTTGGTCGTAGAGAGCTAGGAGCA	+
Preference number: 6 (lower is better) Translates to: AQMHCIVLIAIQAAW*KCQPLCVGRRELGA Trigger: TGCTCCTAGCTCTCTACGACCAACACAGAGTGGCTGACACTTCAACCAGGCAGCTTGGATTGCAATGAGGACAATGCAATGCATTTGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646212.1
CDS TCA 72 bp	ATTGCATTGTCCTCATTGCAATCCAAGCTGCCTGGTTaGAGTGTCAGCCACTCTGTGTTGGTCGTAGAGAGC	+
Preference number: 6 (lower is better) Translates to: IALSSLQSKLPG*SVSHSVLVVES Trigger: GCTCTCTACGACCAACACAGAGTGGCTGACACTTCAACCAGGCAGCTTGGATTGCAATGAGGACAATGCAAT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646212.1
CDS GCA 72 bp	CCAAATGCATTGCATTGTCCTCATTGCAATCCAAGCTaGCTGGTTGAAGTGTCAGCCACTCTGTGTTGGTCG	+
Preference number: 6 (lower is better) Translates to: PNALHCPHCNPS*LVEVSATLCWS Trigger: CGACCAACACAGAGTGGCTGACACTTCAACCAGGCAGCTTGGATTGCAATGAGGACAATGCAATGCATTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646212.1
CDS TCA 72 bp	CTCTGTGTTGGTCGTAGAGAGCTAGGAGCACCAAGATaGTGGGTAAATCTTAACAGTGACCTTTTGGGAAGA	+
Preference number: 6 (lower is better) Translates to: LCVGRRELGAPR*WVNLNSDLLGR Trigger: TCTTCCCAAAAGGTCACTGTTAAGATTTACCCATCATCTTGGTGCTCCTAGCTCTCTACGACCAACACAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000646212.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu