Pregenerated sensors for CACNA1C-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000256837Ensembl transcript IDs: ENST00000542984.1, ENST00000646549.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACTCTCCATATTCATGGTGCAATGCATTCCCTTTGCTCTCAAGGTTaGTTATCATACATGTCAGCCTATGCTATCCGCGTGGTGGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: TLHIHGAMHSLCSQG*LSYMSAYAIRVVER Trigger: TCTTTCCACCACGCGGATAGCATAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATATGGAGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS TCA 90 bp | TTATTCTTGTTATATGCATGCAGCCTTACTTCAGGAAATTTGTGCTaGTTACATGACATGAGAGGGGAGGAACCAGAGCTAAGGGTGCAA | + |
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Preference number: 5 (lower is better) Translates to: LFLLYACSLTSGNLC*LHDMRGEEPELRVQ Trigger: TTGCACCCTTAGCTCTGGTTCCTCCCCTCTCATGTCATGTAATCAGCACAAATTTCCTGAAGTAAGGCTGCATGCATATAACAAGAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS GCA 90 bp | ATTTTAAAGCTCACTCTCCATATTCATGGTGCAATGCATTCCCTTTaGTCTCAAGGTTGCTTATCATACATGTCAGCCTATGCTATCCGC | + |
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Preference number: 5 (lower is better) Translates to: ILKLTLHIHGAMHSL*SQGCLSYMSAYAIR Trigger: GCGGATAGCATAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATATGGAGAGTGAGCTTTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS GCA 90 bp | TTATTGCTGTCCACCAAAGAGCATTTGTTAATGGCATCATATTCTTaGCTCCTTCAGTTTCCAAGAGAAGTGTGTGTGTGCACTTATGTG | + |
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Preference number: 5 (lower is better) Translates to: LLLSTKEHLLMASYS*LLQFPREVCVCTYV Trigger: CACATAAGTGCACACACACACTTCTCTTGGAAACTGAAGGAGGCAAGAATATGATGCCATTAACAAATGCTCTTTGGTGGACAGCAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS GCA 90 bp | ATTTGTCTTTCATACTATTTTAAAGCTCACTCTCCATATTCATGGTaGAATGCATTCCCTTTGCTCTCAAGGTTGCTTATCATACATGTC | + |
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Preference number: 5 (lower is better) Translates to: ICLSYYFKAHSPYSW*NAFPLLSRLLIIHV Trigger: GACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATATGGAGAGTGAGCTTTAAAATAGTATGAAAGACAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS CAA 72 bp | GGGGAGGAACCAGAGCTAAGGGTGCAAGGCACAGGTTaGGAGACAAACAGCCCTAGGCATCCAAACCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: GEEPELRVQGTG*ETNSPRHPNQL Trigger: GAGCTGGTTTGGATGCCTAGGGCTGTTTGTCTCCAAACCTGTGCCTTGCACCCTTAGCTCTGGTTCCTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS GCA 72 bp | ATTCATGGTGCAATGCATTCCCTTTGCTCTCAAGGTTaGTTATCATACATGTCAGCCTATGCTATCCGCGTG | + |
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Preference number: 6 (lower is better) Translates to: IHGAMHSLCSQG*LSYMSAYAIRV Trigger: CACGCGGATAGCATAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS CAA 72 bp | TATTCATGGTGCAATGCATTCCCTTTGCTCTCAAGGTaGCTTATCATACATGTCAGCCTATGCTATCCGCGT | + |
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Preference number: 6 (lower is better) Translates to: YSWCNAFPLLSR*LIIHVSLCYPR Trigger: ACGCGGATAGCATAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS CAA 72 bp | GCTCACTCTCCATATTCATGGTGCAATGCATTCCCTTaGCTCTCAAGGTTGCTTATCATACATGTCAGCCTA | + |
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Preference number: 6 (lower is better) Translates to: AHSPYSWCNAFP*LSRLLIIHVSL Trigger: TAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATATGGAGAGTGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS TCA 72 bp | TTATATGCATGCAGCCTTACTTCAGGAAATTTGTGCTaGTTACATGACATGAGAGGGGAGGAACCAGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: LYACSLTSGNLC*LHDMRGEEPEL Trigger: TAGCTCTGGTTCCTCCCCTCTCATGTCATGTAATCAGCACAAATTTCCTGAAGTAAGGCTGCATGCATATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS GCA 72 bp | CTCACTCTCCATATTCATGGTGCAATGCATTCCCTTTaGTCTCAAGGTTGCTTATCATACATGTCAGCCTAT | + |
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Preference number: 6 (lower is better) Translates to: LTLHIHGAMHSL*SQGCLSYMSAY Trigger: ATAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATATGGAGAGTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS GCA 72 bp | TCCACCAAAGAGCATTTGTTAATGGCATCATATTCTTaGCTCCTTCAGTTTCCAAGAGAAGTGTGTGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: STKEHLLMASYS*LLQFPREVCVC Trigger: GCACACACACACTTCTCTTGGAAACTGAAGGAGGCAAGAATATGATGCCATTAACAAATGCTCTTTGGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS CAA 72 bp | GTCCACCAAAGAGCATTTGTTAATGGCATCATATTCTaGCCTCCTTCAGTTTCCAAGAGAAGTGTGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: VHQRAFVNGIIF*PPSVSKRSVCV Trigger: CACACACACACTTCTCTTGGAAACTGAAGGAGGCAAGAATATGATGCCATTAACAAATGCTCTTTGGTGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS CAA 90 bp | TATTTTAAAGCTCACTCTCCATATTCATGGTGCAATGCATTCCCTTaGCTCTCAAGGTTGCTTATCATACATGTCAGCCTATGCTATCCG | + |
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Preference number: 6 (lower is better) Translates to: YFKAHSPYSWCNAFP*LSRLLIIHVSLCYP Trigger: CGGATAGCATAGGCTGACATGTATGATAAGCAACCTTGAGAGCAAAGGGAATGCATTGCACCATGAATATGGAGAGTGAGCTTTAAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS CAA 90 bp | ATTATTGCTGTCCACCAAAGAGCATTTGTTAATGGCATCATATTCTaGCCTCCTTCAGTTTCCAAGAGAAGTGTGTGTGTGCACTTATGT | + |
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Preference number: 6 (lower is better) Translates to: IIAVHQRAFVNGIIF*PPSVSKRSVCVHLC Trigger: ACATAAGTGCACACACACACTTCTCTTGGAAACTGAAGGAGGCAAGAATATGATGCCATTAACAAATGCTCTTTGGTGGACAGCAATAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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| CDS TCA 72 bp | CTAGAAAATATTAGCACCCACTTTATAGAGTTTTTCTaGGGTTTCGATGATCTAATACAAGCAAAGCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: LENISTHFIEFF*GFDDLIQAKRF Trigger: GAAGCGCTTTGCTTGTATTAGATCATCGAAACCTCAGAAAAACTCTATAAAGTGGGTGCTAATATTTTCTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000542984.1 ENST00000646549.1 |
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