Pregenerated sensors for CABS1 (Homo sapiens)
Ensembl gene IDs: ENSG00000145309Ensembl transcript IDs: ENST00000273936.6
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAAAGCTGGCTAGACTATTaGACAATTCTACATGGTATC | + |
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Preference number: 2 (lower is better) Translates to: QTHLSSLCQKRMKIYVLESWLDY*TILHGI Trigger: GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCT...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| 3UTR-3UTR CCA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAAGATGTTAAGGCTAGCTaGCTAGACTATTGCACAATT | + |
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Preference number: 2 (lower is better) Translates to: QTHLSSLCQKRMKIYVLEDVKAS*LDYCTI Trigger: AATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATC...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCGGCGAAGTGGCACTGTaGACTCTCACAGGTCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGIGEVAL*TLTGLA Trigger: AGCAAGACCTGTGAGAGTGCACAGTGCCACTTCGCC...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCAACCATCTTCAGCCATaGGGCGAAGTGGCACTGTGC | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGINHLQP*GEVALC Trigger: GCACAGTGCCACTTCGCCCCATGGCTGAAGATGGTT...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCGTGGAATCAGTGACCTaGACAGCCTCATCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGIVESVT*TASSAG Trigger: CCCTGCTGATGAGGCTGTCCAGGTCACTGATTCCAC...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAAGCCATGGGGCGAAGTaGCACTGTGCACTCTCACAG | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLSHGAK*HCALSQ Trigger: CTGTGAGAGTGCACAGTGCCACTTCGCCCCATGGCT...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAACAGCAACACCAGCACTaGTGTCCTTTAGTGTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: QTHLSSLCQKRMKIYVLEQQHQH*CPLVCQ Trigger: CTGGCACACTAAAGGACAGCAGTGCTGGTGTTGCTG...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCTTCATCCTTTTTACGTaGAAAGGCAGGAGCGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGIFILFT*KGRSVS Trigger: GCTGACGCTCCTGCCTTTCCACGTAAAAAGGATGAA...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCTGCTGTCCTTTAGTGTaGCAGAGACTTCAGAGGTTA | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGICCPLV*QRLQRL Trigger: TAACCTCTGAAGTCTCTGGCACACTAAAGGACAGCA...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCCAGCCCCAAAGAAAATaGTTGCTGCAGTTGGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGIQPQRK*LLQLVF Trigger: AAACACCAACTGCAGCAACCATTTTCTTTGGGGCTG...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTACACTCTCACAGGTCTTaGTTCTGGACTCAGTGGTAT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLHSHRS*FWTQWY Trigger: ATACCACTGAGTCCAGAAGCAAGACCTGTGAGAGTG...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCCAGTTGGTGTTTTACTaGTTTCTGTTGGAGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGIQLVFY*FLLEDE Trigger: CTCATCCTCCAACAGAAAGCAGTAAAACACCAACTG...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR TCA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAAATTCATTTACTGAAGTaGCGTGGTCTCCTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: QTHLSSLCQKRMKIYVLEIHLLK*RGLLLK Trigger: CTTCAGAAGGAGACCACGTCACTTCAGTAAATGAAT...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCGATGTTAAGGCTAGCTaGCTAGACTATTGCACAATT | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGIDVKAS*LDYCTI Trigger: AATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATC...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAGGTAGTTCCAGAAAATaGCTCAGTGATCTTAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLGSSRK*LSDLRY Trigger: GTACCTAAGATCACTGAGCCATTTTCTGGAACTACC...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAAACAGAATGGGTCTCTaGTTCATTTGCAGTATCTCT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLNRMGL*FICSIS Trigger: AGAGATACTGCAAATGAAGCAGAGACCCATTCTGTT...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAAGCTGGCTAGACTATTaGACAATTCTACATGGTATC | + |
|
Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLSWLDY*TILHGI Trigger: GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCT...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAAATGGTTGCTGCAGTTaGTGTTTTACTGCTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLNGCCS*CFTAFC Trigger: ACAGAAAGCAGTAAAACACCAACTGCAGCAACCATT...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATTTACTGAAGTGACGTaGTCTCCTTCTGAAGTAATA | + |
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Preference number: 4 (lower is better) Translates to: QTHLSSLCQKRMKIYVLEFTEVT*SPSEVI Trigger: TATTACTTCAGAAGGAGACCACGTCACTTCAGTAAA...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTATATCCGTTTCAGTTGTaGAGGTGTCTTCCTTATAGT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLYPFQL*RCLPYS Trigger: ACTATAAGGAAGACACCTCCACAACTGAAACGGATA...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCTTGCACAATTCTACATaGTATCCCTTTTGTTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLDVKASWLDYCTILHGILHNST*YPFCCF Trigger: AAAGCAACAAAAGGGATACCATGTAGAATTGTGCAA...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR TCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAGTTGCTTTTAAATCATaGACTCATCGGGTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLVAFKS*THRVLL Trigger: AAGAAGAACCCGATGAGTTCATGATTTAAAAGCAAC...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR TCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAGAAGATTTATGTCCTTaGATCGCTAACAAGAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLEDLCP*IANKSH Trigger: ATGACTCTTGTTAGCGATTCAAGGACATAAATCTTC...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR GCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAAAAGAAAATGGTTGCTaGAGTTGGTGTTTTACTGCT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLKENGC*SWCFTA Trigger: AGCAGTAAAACACCAACTGCAGCAACCATTTTCTTT...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAGATGAGAATAAATTTTaGGCAAACCATCTTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLDENKF*ANHLQP Trigger: TGGCTGAAGATGGTTTGCCCAAAATTTATTCTCATC...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CCA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAATTCCCAATTTTCACTaGCATGAAATGTTCGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: HLSSLCQKRMKIYVLESLIPNFH*HEMFGN Trigger: ATTACCGAACATTTCATGCCAGTGAAAATTGGGAAT...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 90 bp | GAAAGGCAGGAGCGTCAGCAACACCAGCACTGCTGTCCTTTAGTGTaGCAGAGACTTCAGAGGTTATTGAGATCTCTGCATCTCCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: ERQERQQHQHCCPLV*QRLQRLLRSLHLLC Trigger: ACACAGGAGATGCAGAGATCTCAATAACCTCTGAAGTCTCTGGCACACTAAAGGACAGCAGTGCTGGTGTTGCTGACGCTCCTGCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 90 bp | GGAGCAGGAGGGATTTCAGCCTCAGGAATAGTGGAATCAGTGACCTaGACAGCCTCATCAGCAGGGACATTGGATTTGATGGAGGAATTA | + |
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Preference number: 5 (lower is better) Translates to: GAGGISASGIVESVT*TASSAGTLDLMEEL Trigger: TAATTCCTCCATCAAATCCAATGTCCCTGCTGATGAGGCTGTCCAGGTCACTGATTCCACTATTCCTGAGGCTGAAATCCCTCCTGCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 90 bp | CATCCTTTTTACGTGGAAAGGCAGGAGCGTCAGCAACACCAGCACTaGTGTCCTTTAGTGTGCCAGAGACTTCAGAGGTTATTGAGATCT | + |
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Preference number: 5 (lower is better) Translates to: HPFYVERQERQQHQH*CPLVCQRLQRLLRS Trigger: AGATCTCAATAACCTCTGAAGTCTCTGGCACACTAAAGGACAGCAGTGCTGGTGTTGCTGACGCTCCTGCCTTTCCACGTAAAAAGGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 90 bp | ATGAGAATAAATTTTGGGCAAACCATCTTCAGCCATGGGGCGAAGTaGCACTGTGCACTCTCACAGGTCTTGCTTCTGGACTCAGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: MRINFGQTIFSHGAK*HCALSQVLLLDSVV Trigger: TACCACTGAGTCCAGAAGCAAGACCTGTGAGAGTGCACAGTGCCACTTCGCCCCATGGCTGAAGATGGTTTGCCCAAAATTTATTCTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 90 bp | GGATTCAACAGCAGTAAGCAAAACAGAATGGGTCTCTGCTTCATTTaGAGTATCTCTCTCCATCCAAATACTGGCTCCCTCGGTAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: GFNSSKQNRMGLCFI*SISLHPNTGSLGSF Trigger: GAAACTACCGAGGGAGCCAGTATTTGGATGGAGAGAGATACTGCAAATGAAGCAGAGACCCATTCTGTTTTGCTTACTGCTGTTGAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | CATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCGCTAGCACTCTCACAGGTCTaGCTTCTGGACTCAGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: HLSSLCQKRMKIYVLESLALSQV*LLDSVV Trigger: TACCACTGAGTCCAGAAGCAAGACCTGTGAGAGTGC...TAGCGATTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAAGGGTCTCTGCTTCATTaGCAGTATCTCTCTCCATCC | + |
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Preference number: 5 (lower is better) Translates to: QTHLSSLCQKRMKIYVLEGSLLH*QYLSPS Trigger: GGATGGAGAGAGATACTGCAAATGAAGCAGAGACCC...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCAGACTTCAGAGGTTATaGAGATCTCTGCATCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: FLDVKASWLDYCTILHGIRLQRL*RSLHLL Trigger: CAGGAGATGCAGAGATCTCAATAACCTCTGAAGTCT...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS TCA 90 bp | ATGGAGTTTGTAGTGCCAGTCAGAGAGGTAATTTCTTTCTGTAGGTaGGTTGTTGACTTAATAAAGTCGGTCCCCATATCATCTTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: MEFVVPVREVISFCR*VVDLIKSVPISSSD Trigger: ATCAGAAGATGATATGGGGACCGACTTTATTAAGTCAACAACTCACCTACAGAAAGAAATTACCTCTCTGACTGGCACTACAAACTCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCGATTTGGGAATAGCATaGTCAGCCCCAAAGAAAATG | + |
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Preference number: 5 (lower is better) Translates to: FLDVKASWLDYCTILHGIDLGIA*SAPKKM Trigger: CATTTTCTTTGGGGCTGACAATGCTATTCCCAAATC...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCAGATATCCGTTTCAGTaGTGGAGGTGTCTTCCTTAT | + |
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Preference number: 5 (lower is better) Translates to: FLDVKASWLDYCTILHGIRYPFQ*WRCLPY Trigger: ATAAGGAAGACACCTCCACAACTGAAACGGATATCT...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAAAAATGGTTGCTGCAGTaGGTGTTTTACTGCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: QTHLSSLCQKRMKIYVLEKWLLQ*VFYCFL Trigger: CAGAAAGCAGTAAAACACCAACTGCAGCAACCATTT...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCATAGTTGTTTCTGATTaGGGAATAGCATTGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: FLDVKASWLDYCTILHGIIVVSD*GIALSA Trigger: GGCTGACAATGCTATTCCCAAATCAGAAACAACTAT...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | CAGACCCATTTAAGTAGTCTGTGCCAGAAAAGAATGAAGATTTATGTCCTTGAATCATCAGCAGGGACATaGGATTTGATGGAGGAATTA | + |
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Preference number: 5 (lower is better) Translates to: QTHLSSLCQKRMKIYVLESSAGT*DLMEEL Trigger: TAATTCCTCCATCAAATCCAATGTCCCTGCTGATGA...TTCAAGGACATAAATCTTCATTCTTTTCTGGCACAGACTACTTAAATGGGTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTGCACAATTCTACATGGTATCTCTTCCCGTTTATCTTaGTCTTTTTCAGCAGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: FLDVKASWLDYCTILHGISSRLS*SFSAEV Trigger: TACCTCTGCTGAAAAAGACAAAGATAAACGGGAAGA...GATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 90 bp | GTTGAAAAATCGCTTTCTAGCATATATTCATTTACTGAAGTGACGTaGTCTCCTTCTGAAGTAATAGTTGTTTCTGATTTGGGAATAGCA | + |
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Preference number: 5 (lower is better) Translates to: VEKSLSSIYSFTEVT*SPSEVIVVSDLGIA Trigger: TGCTATTCCCAAATCAGAAACAACTATTACTTCAGAAGGAGACCACGTCACTTCAGTAAATGAATATATGCTAGAAAGCGATTTTTCAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 72 bp | GCAAACCATCTTCAGCCATGGGGCGAAGTGGCACTGTaGACTCTCACAGGTCTTGCTTCTGGACTCAGTGGT | + |
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Preference number: 6 (lower is better) Translates to: ANHLQPWGEVAL*TLTGLASGLSG Trigger: ACCACTGAGTCCAGAAGCAAGACCTGTGAGAGTGCACAGTGCCACTTCGCCCCATGGCTGAAGATGGTTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 72 bp | TACGTGGAAAGGCAGGAGCGTCAGCAACACCAGCACTaGTGTCCTTTAGTGTGCCAGAGACTTCAGAGGTTA | + |
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Preference number: 6 (lower is better) Translates to: YVERQERQQHQH*CPLVCQRLQRL Trigger: TAACCTCTGAAGTCTCTGGCACACTAAAGGACAGCAGTGCTGGTGTTGCTGACGCTCCTGCCTTTCCACGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 72 bp | AATTTTGGGCAAACCATCTTCAGCCATGGGGCGAAGTaGCACTGTGCACTCTCACAGGTCTTGCTTCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: NFGQTIFSHGAK*HCALSQVLLLD Trigger: GTCCAGAAGCAAGACCTGTGAGAGTGCACAGTGCCACTTCGCCCCATGGCTGAAGATGGTTTGCCCAAAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 72 bp | GGGATTTCAGCCTCAGGAATAGTGGAATCAGTGACCTaGACAGCCTCATCAGCAGGGACATTGGATTTGATG | + |
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Preference number: 6 (lower is better) Translates to: GISASGIVESVT*TASSAGTLDLM Trigger: CATCAAATCCAATGTCCCTGCTGATGAGGCTGTCCAGGTCACTGATTCCACTATTCCTGAGGCTGAAATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 72 bp | GATGAGAATAAATTTTGGGCAAACCATCTTCAGCCATaGGGCGAAGTGGCACTGTGCACTCTCACAGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: DENKFWANHLQP*GEVALCTLTGL Trigger: AAGACCTGTGAGAGTGCACAGTGCCACTTCGCCCCATGGCTGAAGATGGTTTGCCCAAAATTTATTCTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 72 bp | AGCAGTAAGCAAAACAGAATGGGTCTCTGCTTCATTTaGAGTATCTCTCTCCATCCAAATACTGGCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: SSKQNRMGLCFI*SISLHPNTGSL Trigger: GAGGGAGCCAGTATTTGGATGGAGAGAGATACTGCAAATGAAGCAGAGACCCATTCTGTTTTGCTTACTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 72 bp | ATTATAATTGCTCATATCAGCTTCATCCTTTTTACGTaGAAAGGCAGGAGCGTCAGCAACACCAGCACTGCT | + |
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Preference number: 6 (lower is better) Translates to: IIIAHISFILFT*KGRSVSNTSTA Trigger: AGCAGTGCTGGTGTTGCTGACGCTCCTGCCTTTCCACGTAAAAAGGATGAAGCTGATATGAGCAATTATAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CCA 72 bp | TTCGGTTATTTTCTCTTCTTCAAGGGCAGTTATGTCTaGAATAGTAGTGAAGCTTTCTTCAGGAGCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: FGYFLFFKGSYV*NSSEAFFRSRR Trigger: CCTCCTGCTCCTGAAGAAAGCTTCACTACTATTCCAGACATAACTGCCCTTGAAGAAGAGAAAATAACCGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CAA 90 bp | ACTGAAGTGACGTGGTCTCCTTCTGAAGTAATAGTTGTTTCTGATTaGGGAATAGCATTGTCAGCCCCAAAGAAAATGGTTGCTGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: TEVTWSPSEVIVVSD*GIALSAPKKMVAAV Trigger: AACTGCAGCAACCATTTTCTTTGGGGCTGACAATGCTATTCCCAAATCAGAAACAACTATTACTTCAGAAGGAGACCACGTCACTTCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CAA 90 bp | ACTCATCGGGTTCTTCTTTCAGTAGTTCAAAGATATCCGTTTCAGTaGTGGAGGTGTCTTCCTTATAGTCTGGGGTATCTAATACAGAGG | + |
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Preference number: 6 (lower is better) Translates to: THRVLLSVVQRYPFQ*WRCLPYSLGYLIQR Trigger: CCTCTGTATTAGATACCCCAGACTATAAGGAAGACACCTCCACAACTGAAACGGATATCTTTGAACTACTGAAAGAAGAACCCGATGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CAA 72 bp | ACGTGGTCTCCTTCTGAAGTAATAGTTGTTTCTGATTaGGGAATAGCATTGTCAGCCCCAAAGAAAATGGTT | + |
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Preference number: 6 (lower is better) Translates to: TWSPSEVIVVSD*GIALSAPKKMV Trigger: AACCATTTTCTTTGGGGCTGACAATGCTATTCCCAAATCAGAAACAACTATTACTTCAGAAGGAGACCACGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS CAA 72 bp | GTTCTTCTTTCAGTAGTTCAAAGATATCCGTTTCAGTaGTGGAGGTGTCTTCCTTATAGTCTGGGGTATCTA | + |
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Preference number: 6 (lower is better) Translates to: VLLSVVQRYPFQ*WRCLPYSLGYL Trigger: TAGATACCCCAGACTATAAGGAAGACACCTCCACAACTGAAACGGATATCTTTGAACTACTGAAAGAAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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| CDS GCA 72 bp | AATTTCTTAGATGTTAAGGCTAGCTGGCTAGACTATTaGACAATTCTACATGGTATCCCTTTTGTTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: NFLDVKASWLDY*TILHGIPFVAF Trigger: AAAAGCAACAAAAGGGATACCATGTAGAATTGTGCAATAGTCTAGCCAGCTAGCCTTAACATCTAAGAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273936.6 |
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