Pregenerated sensors for C9ORF92 (Homo sapiens)

Ensembl gene IDs: ENSG00000205549

Ensembl transcript IDs: ENST00000380685.5, ENST00000648575.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	TCTAGCTGGGGGCCAAGCCCCATTCGTTCTGGAGACTaGGACGTCCATGATCGAGGCGCCAGTGGCTTCGGT	+
Preference number: 6 (lower is better) Translates to: SSWGPSPIRSGD*DVHDRGASGFG Trigger: ACCGAAGCCACTGGCGCCTCGATCATGGACGTCTCAGTCTCCAGAACGAATGGGGCTTGGCCCCCAGCTAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000648575.1
CDS TCA 72 bp	GCCAAGCCCCATTCGTTCTGGAGACTGAGACGTCCATaGTCGAGGCGCCAGTGGCTTCGGTGTATGGTGAGA	+
Preference number: 6 (lower is better) Translates to: AKPHSFWRLRRP*SRRQWLRCMVR Trigger: TCTCACCATACACCGAAGCCACTGGCGCCTCGATCATGGACGTCTCAGTCTCCAGAACGAATGGGGCTTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648575.1
CDS CAA 72 bp	GAGCCGCTGTTTCCAGGATGGTGCATTGATACTGTATaGTCTGGAGGGAAGGCACGGCGTCCACCCCCATGG	+
Preference number: 6 (lower is better) Translates to: EPLFPGWCIDTV*SGGKARRPPPW Trigger: CCATGGGGGTGGACGCCGTGCCTTCCCTCCAGACAATACAGTATCAATGCACCATCCTGGAAACAGCGGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000648575.1
CDS CAA 72 bp	CTTTGGCCTTTTCCTCTTCCAGCCTCTACAAGCAGGTaGTTTGCCCAGACACAGACCTCTCTCCCACAAAGC	+
Preference number: 6 (lower is better) Translates to: LWPFPLPASTSR*FAQTQTSLPQS Trigger: GCTTTGTGGGAGAGAGGTCTGTGTCTGGGCAAACAACCTGCTTGTAGAGGCTGGAAGAGGAAAAGGCCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380685.5

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