Pregenerated sensors for C9ORF78 (Homo sapiens)
Ensembl gene IDs: ENSG00000136819Ensembl transcript IDs: ENST00000372447.7, ENST00000461539.5, ENST00000461762.5, ENST00000480023.1, ENST00000492991.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGTCGCCCCGGCGGCGACGGAAAATCTTCCGGACGACCGGCATGGTaGCAACGGCCGAGTTGTACAGCCGCCGCGCCTCTGCGCAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: SRPGGDGKSSGRPAW*QRPSCTAAAPLRSG Trigger: GCCGCTGCGCAGAGGCGCGGCGGCTGTACAACTCGGCCGTTGTCACCATGCCGGTCGTCCGGAAGATTTTCCGTCGCCGCCGGGGCGACT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000372447.7 ENST00000492991.5 |
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| CDS GCA 90 bp | CCCATATGCCCCGGCTCCAATGCCAGGCTCCACCCTGTCCCCCGCTaGATCCTGCCTCCATGGGTTCCCACATTGCTGAGCACTCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: PICPGSNARLHPVPR*ILPPWVPTLLSTPG Trigger: GCCTGGAGTGCTCAGCAATGTGGGAACCCATGGAGGCAGGATGCAGCGGGGGACAGGGTGGAGCCTGGCATTGGAGCCGGGGCATATGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000461762.5 ENST00000480023.1 |
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| CDS CCA 90 bp | TCCAATGCCAGGCTCCACCCTGTCCCCCGCTGCATCCTGCCTCCATaGGTTCCCACATTGCTGAGCACTCCAGGCAGCCCCGAGGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: SNARLHPVPRCILPP*VPTLLSTPGSPEAF Trigger: AAAGGCCTCGGGGCTGCCTGGAGTGCTCAGCAATGTGGGAACCCATGGAGGCAGGATGCAGCGGGGGACAGGGTGGAGCCTGGCATTGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000461762.5 ENST00000480023.1 |
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| CDS GCA 90 bp | GGAAAAGCCTATAAGCATAAGACAGGGCTCAACGAGCACCGCAGATaGTGGAAGAAGGGTGCGCTGGTGGTGAAGTGGTACACTTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: GKAYKHKTGLNEHRR*WKKGALVVKWYTLP Trigger: TGGCAAAGTGTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCGGTGCTCGTTGAGCCCTGTCTTATGCTTATAGGCTTTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS CCA 90 bp | AAAGCCTATAAGCATAAGACAGGGCTCAACGAGCACCGCAGATGCTaGAAGAAGGGTGCGCTGGTGGTGAAGTGGTACACTTTGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: KAYKHKTGLNEHRRC*KKGALVVKWYTLPL Trigger: AAGTGGCAAAGTGTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCGGTGCTCGTTGAGCCCTGTCTTATGCTTATAGGCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS CCA 90 bp | AGGTATGCGGATTGCAACATTAGTGCAAGGGTGGGATTTGAGGGGTaGGTAGGCAAGCCGGCTGGAAAAGCCTATAAGCATAAGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: RYADCNISARVGFEG*VGKPAGKAYKHKTG Trigger: CCCTGTCTTATGCTTATAGGCTTTTCCAGCCGGCTTGCCTACCCACCCCTCAAATCCCACCCTTGCACTAATGTTGCAATCCGCATACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS GCA 90 bp | GGCCTGATACAGCTGAACAGCTGTAACACGCTAAAGAACCACTTTTaGTTCCAGCAGTCAGGGGCCCTTACTACTCTGATCAAGCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GLIQLNSCNTLKNHF*FQQSGALTTLIKPS Trigger: TGAAGGCTTGATCAGAGTAGTAAGGGCCCCTGACTGCTGGAAGCAAAAGTGGTTCTTTAGCGTGTTACAGCTGTTCAGCTGTATCAGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480023.1 |
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| CDS GCA 90 bp | TCTGCTCTTCTGATCAAGAGCAAATTGAGCTTCAGAGAAGTAAAATaGTTAAGGCTCAAAGTTTGTAAAGGCCAGAAAAGAGCCCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: SALLIKSKLSFREVK*LRLKVCKGQKRAQK Trigger: CTTCTGGGCTCTTTTCTGGCCTTTACAAACTTTGAGCCTTAAGCATTTTACTTCTCTGAAGCTCAATTTGCTCTTGATCAGAAGAGCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480023.1 |
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| CDS CAA 72 bp | ATCTTCCGGACGACCGGCATGGTGACAACGGCCGAGTaGTACAGCCGCCGCGCCTCTGCGCAGCGGCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: IFRTTGMVTTAE*YSRRASAQRPR Trigger: CCTGGGCCGCTGCGCAGAGGCGCGGCGGCTGTACAACTCGGCCGTTGTCACCATGCCGGTCGTCCGGAAGAT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372447.7 ENST00000492991.5 |
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| CDS TCA 72 bp | GGCGGCGACGGAAAATCTTCCGGACGACCGGCATGGTaGCAACGGCCGAGTTGTACAGCCGCCGCGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GGDGKSSGRPAW*QRPSCTAAAPL Trigger: CAGAGGCGCGGCGGCTGTACAACTCGGCCGTTGTCACCATGCCGGTCGTCCGGAAGATTTTCCGTCGCCGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000372447.7 ENST00000492991.5 |
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| CDS CAA 90 bp | CTCCACCCTGTCCCCCGCTGCATCCTGCCTCCATGGGTTCCCACATaGCTGAGCACTCCAGGCAGCCCCGAGGCCTTTGTTGCACTCACG | + |
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Preference number: 6 (lower is better) Translates to: LHPVPRCILPPWVPT*LSTPGSPEAFVALT Trigger: CGTGAGTGCAACAAAGGCCTCGGGGCTGCCTGGAGTGCTCAGCAATGTGGGAACCCATGGAGGCAGGATGCAGCGGGGGACAGGGTGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000461762.5 ENST00000480023.1 |
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| CDS CCA 72 bp | AGCAAGGCCACAGCACTAGCGTTGAAAGCATCCGCGTaGCGTCTCGCGTCTCGGGCGCTGACTTTTCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: SKATALALKASA*RLASRALTFLS Trigger: GGAAAGAAAAGTCAGCGCCCGAGACGCGAGACGCCACGCGGATGCTTTCAACGCTAGTGCTGTGGCCTTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461539.5 |
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| CDS CCA 72 bp | AGGGGAAGGCACATAGTCATGGTCCAGAGCATGGACTaGAACCCATATGCCCCGGCTCCAATGCCAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RGRHIVMVQSMD*NPYAPAPMPGS Trigger: GGAGCCTGGCATTGGAGCCGGGGCATATGGGTTCCAGTCCATGCTCTGGACCATGACTATGTGCCTTCCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000461762.5 ENST00000480023.1 |
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| CDS GCA 72 bp | AGGGCTCAACGAGCACCGCAGATGCTGGAAGAAGGGTaGGCTGGTGGTGAAGTGGTACACTTTGCCACTTTC | + |
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Preference number: 6 (lower is better) Translates to: RAQRAPQMLEEG*AGGEVVHFATF Trigger: GAAAGTGGCAAAGTGTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCGGTGCTCGTTGAGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS CCA 72 bp | AAGCATAAGACAGGGCTCAACGAGCACCGCAGATGCTaGAAGAAGGGTGCGCTGGTGGTGAAGTGGTACACT | + |
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Preference number: 6 (lower is better) Translates to: KHKTGLNEHRRC*KKGALVVKWYT Trigger: AGTGTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCGGTGCTCGTTGAGCCCTGTCTTATGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS GCA 72 bp | TATAAGCATAAGACAGGGCTCAACGAGCACCGCAGATaGTGGAAGAAGGGTGCGCTGGTGGTGAAGTGGTAC | + |
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Preference number: 6 (lower is better) Translates to: YKHKTGLNEHRR*WKKGALVVKWY Trigger: GTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCGGTGCTCGTTGAGCCCTGTCTTATGCTTATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS CCA 72 bp | CGCAGATGCTGGAAGAAGGGTGCGCTGGTGGTGAAGTaGTACACTTTGCCACTTTCCTGTAAAGCCATTTGG | + |
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Preference number: 6 (lower is better) Translates to: RRCWKKGALVVK*YTLPLSCKAIW Trigger: CCAAATGGCTTTACAGGAAAGTGGCAAAGTGTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS CAA 90 bp | CGCAGATGCTGGAAGAAGGGTGCGCTGGTGGTGAAGTGGTACACTTaGCCACTTTCCTGTAAAGCCATTTGGCATTATCTTGGCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: RRCWKKGALVVKWYT*PLSCKAIWHYLGLE Trigger: TTCCAGGCCAAGATAATGCCAAATGGCTTTACAGGAAAGTGGCAAAGTGTACCACTTCACCACCAGCGCACCCTTCTTCCAGCATCTGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS GCA 72 bp | CAGCTGAACAGCTGTAACACGCTAAAGAACCACTTTTaGTTCCAGCAGTCAGGGGCCCTTACTACTCTGATC | + |
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Preference number: 6 (lower is better) Translates to: QLNSCNTLKNHF*FQQSGALTTLI Trigger: GATCAGAGTAGTAAGGGCCCCTGACTGCTGGAAGCAAAAGTGGTTCTTTAGCGTGTTACAGCTGTTCAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480023.1 |
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| CDS GCA 72 bp | GGGACTCTCACGGCTGTCGGAGAACCACAGTTACTCTaGTCTTCTGATCAAGAGCAAATTGAGCTTCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: GTLTAVGEPQLL*SSDQEQIELQR Trigger: TCTCTGAAGCTCAATTTGCTCTTGATCAGAAGAGCAGAGTAACTGTGGTTCTCCGACAGCCGTGAGAGTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480023.1 |
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| CDS CAA 72 bp | TGGAAGAAGGGTGCGCTGGTGGTGAAGTGGTACACTTaGCCACTTTCCTGTAAAGCCATTTGGCATTATCTT | + |
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Preference number: 6 (lower is better) Translates to: WKKGALVVKWYT*PLSCKAIWHYL Trigger: AAGATAATGCCAAATGGCTTTACAGGAAAGTGGCAAAGTGTACCACTTCACCACCAGCGCACCCTTCTTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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| CDS CCA 72 bp | AAGTGGTACACTTTGCCACTTTCCTGTAAAGCCATTTaGCATTATCTTGGCCTGGAAATCTCATTTCTAAGA | + |
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Preference number: 6 (lower is better) Translates to: KWYTLPLSCKAI*HYLGLEISFLR Trigger: TCTTAGAAATGAGATTTCCAGGCCAAGATAATGCCAAATGGCTTTACAGGAAAGTGGCAAAGTGTACCACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000461762.5 |
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