RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C9ORF43 (Homo sapiens)

Ensembl gene IDs: ENSG00000157653

Ensembl transcript IDs: ENST00000288462.4, ENST00000374165.6, ENST00000490544.1

Found 177 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp CCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTaGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCA +
Preference number: 2 (lower is better)
Translates to: PYVKRCCPQDTSHPA*EHGCPRGCLQSIPP
Trigger: TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR-3UTR GCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAGGCTGCCCCAGGGGATaGCTTCAGTCTATTCCTCCA +
Preference number: 2 (lower is better)
Translates to: CPYVKRCCPQDTSHPALEGCPRG*LQSIPP
Trigger: TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCC...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR-3UTR GCA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCTATGTGAAACGTTGCTaGCCTCAGGATACCAGCCAT +
Preference number: 2 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCYVKRC*PQDTSH
Trigger: ATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATA...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR-3UTR CCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGCCAGCCATCCCGCTTTaGAACACGGCTGCCCCAGGG +
Preference number: 2 (lower is better)
Translates to: EVNKENGIPKLRAQALVKPAIPL*NTAAPG
Trigger: CCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR GCA 72 bp CCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTaGCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAG +
Preference number: 3 (lower is better)
Translates to: PQDTSHPALEHG*PRGCLQSIPPE
Trigger: CTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR CCA 72 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTaGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTA +
Preference number: 3 (lower is better)
Translates to: NVAALRIPAIPL*NTAAPGDAFSL
Trigger: TAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR GCA 72 bp AAGCCCCTCTCCTCTTGCCCTTATGTGAAACGTTGCTaGCCTCAGGATACCAGCCATCCCGCTTTGGAACAC +
Preference number: 3 (lower is better)
Translates to: KPLSSCPYVKRC*PQDTSHPALEH
Trigger: GTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCACCGAGGATTCGAGGATaGCCCCTCTCAATGCGGCGG +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPPRIRG*PLSMRR
Trigger: CCGCCGCATTGAGAGGGGCCATCCTCGAATCCTCGG...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGGCAGCCTGGGCTTCTaGCACAGCGTCCACTGGAGC +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPGSLGF*HSVHWS
Trigger: GCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGCC...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCACCAGCCATCCCGCTTTaGAACACGGCTGCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPPAIPL*NTAAPG
Trigger: CCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCAGCCATCCCGCTTTaGAACACGGCTGCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSIPAIPL*NTAAPG
Trigger: CCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGAAAGTGGGAGAATCTaGTCACGACGGGCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRESGRI*SRRAEV
Trigger: GACCTCAGCCCGTCGTGATCAGATTCTCCCACTTTC...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGGGCTGCCCCAGGGGATaGCTTCAGTCTATTCCTCCA +
Preference number: 4 (lower is better)
Translates to: QDTSHPALEHGCPRGCLQGCPRG*LQSIPP
Trigger: TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCC...CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGCAGCCAAGCCACAGGTaGTTTCGTCCCACTGGCTCT +
Preference number: 4 (lower is better)
Translates to: QDTSHPALEHGCPRGCLQQPSHR*FRPTGS
Trigger: AGAGCCAGTGGGACGAAACCACCTGTGGCTTGGCTG...CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCATTTTGCCTGGCAGCCTaGGCTTCTGGCACAGCGTCC +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPFCLAA*ASGTAS
Trigger: GGACGCTGTGCCAGAAGCCCAGGCTGCCAGGCAAAA...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCACTGATCACGACGGGCTaGGGTCCTGTGAGAGCAAAG +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPLITTG*GPVRAK
Trigger: CTTTGCTCTCACAGGACCTCAGCCCGTCGTGATCAG...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCAATTGCACTGGGGTTaGGGGAGGCACGATCATCCC +
Preference number: 4 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFQLHWG*GRHDHP
Trigger: GGGATGATCGTGCCTCCCCCAACCCCAGTGCAATTG...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGTTCAGACAATTGCACTaGGGTTGGGGGAGGCACGAT +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRFRQLH*GWGRHD
Trigger: ATCGTGCCTCCCCCAACCCCAGTGCAATTGTCTGAA...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTGGCAGCCTGGGCTTCTaGCACAGCGTCCACTGGAGC +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPAGSLGF*HSVHWS
Trigger: GCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGCC...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCATTTTGCCTGGCAGCCTaGGCTTCTGGCACAGCGTCC +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPFCLAA*ASGTAS
Trigger: GGACGCTGTGCCAGAAGCCCAGGCTGCCAGGCAAAA...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
3UTR CAA 72 bp AAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTaGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: KRCCPQDTSHPA*EHGCPRGCLQS
Trigger: AGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCCGTGTTCCTGCGGACTaGTTTCCAGAGAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCRVPAD*FPERPR
Trigger: TCTGGGTCTCTCTGGAAATCAGTCCGCAGGAACACG...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGAGTTGCCCAGCATTGTaGGTGCTGACAAACAGCCAA +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRSCPAL*VLTNSQ
Trigger: TTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACT...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AAGCCCCTCTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCCGAGGATTCGAGGATaGCCCCTCTCAATGCGGCGG +
Preference number: 4 (lower is better)
Translates to: KPLSSCPYVKRCCPQDTSPRIRG*PLSMRR
Trigger: CCGCCGCATTGAGAGGGGCCATCCTCGAATCCTCGG...GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAAGGATATCGCAGTGCTaGTCTTTCCAGGGTGAGGCG +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSRISQC*SFQGEA
Trigger: CGCCTCACCCTGGAAAGACCAGCACTGCGATATCCT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAAGGATATCGCAGTGCTaGTCTTTCCAGGGTGAGGCG +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPRISQC*SFQGEA
Trigger: CGCCTCACCCTGGAAAGACCAGCACTGCGATATCCT...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGGTAACGCTTCGGATTaGGCCCAGAGAGGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSGNASD*AQRGRK
Trigger: TTTCCTACCTCTCTGGGCTCAATCCGAAGCGTTACC...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCGGTAACGCTTCGGATTaGGCCCAGAGAGGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFGNASD*AQRGRK
Trigger: TTTCCTACCTCTCTGGGCTCAATCCGAAGCGTTACC...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGAACTGGATGTTTATGTaGAGTGCTCTGGATCCCTGG +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRNWMFM*SALDPW
Trigger: CCAGGGATCCAGAGCACTTCACATAAACATCCAGTT...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCGGCTGCCCCAGGGGATaGCTTCAGTCTATTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRGCPRG*LQSIPP
Trigger: TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCC...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTGCTTTGGAACACGGCTaGCCCAGGGGATGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPAALEHG*PRGCLQ
Trigger: CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGC...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTCAGCCAAGCCACAGGTaGTTTCGTCCCACTGGCTCT +
Preference number: 4 (lower is better)
Translates to: LWNTAAPGDAFSLFLQRLQPSHR*FRPTGS
Trigger: AGAGCCAGTGGGACGAAACCACCTGTGGCTTGGCTG...AAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAAGATCTTCTTTTGCCTaGCAGCCTGGGCTTCTGGCA +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPRSSFA*QPGLLA
Trigger: TGCCAGAAGCCCAGGCTGCCAGGCAAAAGAAGATCT...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTTCTGCCCCAGAGGACTaGTCCTCCTCATCCTCATCA +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSISAPED*SSSSSS
Trigger: TGATGAGGATGAGGAGGACCAGTCCTCTGGGGCAGA...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCACTGCCCAGTCCGAATTaGCTCCTGAGACCTAATCAG +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPLPSPN*LLRPNQ
Trigger: CTGATTAGGTCTCAGGAGTCAATTCGGACTGGGCAG...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288462.4
CDS-3UTR TCA 90 bp CTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTCAGCATTGTGGGTGCTaGCAAACAGCCAAGCCACAG +
Preference number: 4 (lower is better)
Translates to: LWNTAAPGDAFSLFLQRLQHCGC*QTAKPQ
Trigger: CTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTG...AAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCCAGCATTGTGGGTGCTaGCAAACAGCCAAGCCACAG +
Preference number: 4 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRQHCGC*QTAKPQ
Trigger: CTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTG...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGAGATGTCTACCACGGTaGGCACTGGGAGTTTATCTT +
Preference number: 4 (lower is better)
Translates to: QDTSHPALEHGCPRGCLQRCLPR*ALGVYL
Trigger: AAGATAAACTCCCAGTGCTCACCGTGGTAGACATCT...CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCCGTGTTCCTGCGGACTaGTTTCCAGAGAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRRVPAD*FPERPR
Trigger: TCTGGGTCTCTCTGGAAATCAGTCCGCAGGAACACG...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGAGATGGAAAAAGACTaGCCACTCCATTCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPREMEKD*PLHSRK
Trigger: TTTCCTGGAATGGAGTGGGCAGTCTTTTTCCATCTC...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCATTCAGGATATCGCAGTaGTGGTCTTTCCAGGGTGAG +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPFRISQ*WSFQGE
Trigger: CTCACCCTGGAAAGACCAGCACTGCGATATCCTGAA...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGATGTTTATGTGAAGTaGTCTGGATCCCTGGATCAC +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRDVYVK*SGSLDH
Trigger: GTGATCCAGGGATCCAGAGCACTTCACATAAACATC...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAAAGGAGATCTTCTTTTaGCTGGCAGCCTGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSKEIFF*LAAWAS
Trigger: AGAAGCCCAGGCTGCCAGGCAAAAGAAGATCTCCTT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp AAGCCCCTCTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCAGAGGCTTCTCACTCTaGCCCAGAGGACTGGTCCTC +
Preference number: 4 (lower is better)
Translates to: KPLSSCPYVKRCCPQDTSRGFSL*PRGLVL
Trigger: GAGGACCAGTCCTCTGGGGCAGAGTGAGAAGCCTCT...GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAGCTTTGGAACACGGCTaGCCCAGGGGATGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGALEHG*PRGCLQ
Trigger: CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGC...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCCTTATGTGAAACGTTaGTGCCCTCAGGATACCAGC +
Preference number: 4 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFPYVKR*CPQDTS
Trigger: GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGG...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAAGTTGCCCAGCATTGTaGGTGCTGACAAACAGCCAA +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSSCPAL*VLTNSQ
Trigger: TTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAAGGCACGATCATCCCTaGTGTTCCTACTCGTGTTCC +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPRHDHP*CSYSCS
Trigger: GGAACACGAGTAGGAACACCAGGGATGATCGTGCCT...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCTCTCTGGACAGAGCATaGTTTGCTTTCCACCTGGCA +
Preference number: 4 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCSLDRA*FAFHLA
Trigger: TGCCAGGTGGAAAGCAAACCATGCTCTGTCCAGAGA...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGTTATGTGAAGTGCTCTaGATCCCTGGATCACTCTTG +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRLCEVL*IPGSLL
Trigger: CAAGAGTGATCCAGGGATCCAGAGCACTTCACATAA...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTCGGGCTGAGGTCCTGTaGGAGCAAAGCAGATTCCAA +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPARAEVL*EQSRFQ
Trigger: TTGGAATCTGCTTTGCTCTCACAGGACCTCAGCCCG...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGCTGATCACGACGGGCTaGGGTCCTGTGAGAGCAAAG +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALLITTG*GPVRAK
Trigger: CTTTGCTCTCACAGGACCTCAGCCCGTCGTGATCAG...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTGGGAGTTTTGCAGGATaGGCCGAGGATTCGAGGATG +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPAGSFAG*AEDSRM
Trigger: CATCCTCGAATCCTCGGCTCATCCTGCAAAACTCCC...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAAGAGAGACCCAGAAATaGCTTGCTTTTCACTGCCGA +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSRETQK*LAFHCR
Trigger: TCGGCAGTGAAAAGCAAGTCATTTCTGGGTCTCTCT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGGAGATGGAAAAAGACTaGCCACTCCATTCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: QDTSHPALEHGCPRGCLQEMEKD*PLHSRK
Trigger: TTTCCTGGAATGGAGTGGGCAGTCTTTTTCCATCTC...CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTAGCATTCTAGTGCTCTaGCCAGTCCGAATTGACTCC +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSISILVL*PVRIDS
Trigger: GGAGTCAATTCGGACTGGGCAGAGCACTAGAATGCT...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288462.4
CDS-3UTR GCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCATCCTACTCGTGTTCCTaGGGACTGATTTCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPSYSCS*GLISRE
Trigger: CTCTCTGGAAATCAGTCCGCAGGAACACGAGTAGGA...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAAGAGGCTTCTCACTCTaGCCCAGAGGACTGGTCCTC +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALERGFSL*PRGLVL
Trigger: GAGGACCAGTCCTCTGGGGCAGAGTGAGAAGCCTCT...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCTATGTGAAACGTTGCTaGCCTCAGGATACCAGCCAT +
Preference number: 4 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFYVKRC*PQDTSH
Trigger: ATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATA...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCATATGTGAAACGTTGCTaGCCTCAGGATACCAGCCAT +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPYVKRC*PQDTSH
Trigger: ATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATA...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTTATGTGAAACGTTaGTGCCCTCAGGATACCAGC +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSIPYVKR*CPQDTS
Trigger: GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGG...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTGTGGTTTCGTCCCACTaGCTCTCATCTGGCAAGTCC +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPAVVSSH*LSSGKS
Trigger: GGACTTGCCAGATGAGAGCCAGTGGGACGAAACCAC...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCATACCACGGTGAGCACTaGGAGTTTATCTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPYHGEH*EFIFSI
Trigger: GATGCTGAAGATAAACTCCCAGTGCTCACCGTGGTA...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGCAATTGCACTGGGGTTaGGGGAGGCACGATCATCCC +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALQLHWG*GRHDHP
Trigger: GGGATGATCGTGCCTCCCCCAACCCCAGTGCAATTG...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTTCTCTGGACAGAGCATaGTTTGCTTTCCACCTGGCA +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSISLDRA*FAFHLA
Trigger: TGCCAGGTGGAAAGCAAACCATGCTCTGTCCAGAGA...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAAGTGCTCTGGATCCCTaGATCACTCTTGGCTTTCTT +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPSALDP*ITLGFL
Trigger: AAGAAAGCCAAGAGTGATCCAGGGATCCAGAGCACT...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAAGTGCTCTGGATCCCTaGATCACTCTTGGCTTTCTT +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSSALDP*ITLGFL
Trigger: AAGAAAGCCAAGAGTGATCCAGGGATCCAGAGCACT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCTCTTTGGTCTCTCCGTaGAATCCTGTTTCGAAGTGG +
Preference number: 4 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCSLVSP*NPVSKW
Trigger: CCACTTCGAAACAGGATTCCACGGAGAGACCAAAGA...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACGGGCTGAGGTCCTGTaGGAGCAAAGCAGATTCCAA +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALERAEVL*EQSRFQ
Trigger: TTGGAATCTGCTTTGCTCTCACAGGACCTCAGCCCG...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGGGAGTTTTGCAGGATaGGCCGAGGATTCGAGGATG +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALGSFAG*AEDSRM
Trigger: CATCCTCGAATCCTCGGCTCATCCTGCAAAACTCCC...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAAATGCGGCGGATAGTTaGCCAGCATTGTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALENAADS*PALWVL
Trigger: CAGCACCCACAATGCTGGGCAACTATCCGCCGCATT...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAATGCGGCGGATAGTTaGCCAGCATTGTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGNAADS*PALWVL
Trigger: CAGCACCCACAATGCTGGGCAACTATCCGCCGCATT...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAAACCCTTCGGAGGCCTaGCATGAAATTTGGAGTAAA +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSNPSEA*HEIWSK
Trigger: TTTACTCCAAATTTCATGGCAGGCCTCCGAAGGGTT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCATCAGGGCAGGGAAGTTaGGTCTCATTCAAATTCAAC +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSSGQGS*VSFKFN
Trigger: GTTGAATTTGAATGAGACGCAACTTCCCTGCCCTGA...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGACCCAGAAATGACTTaGTTTTCACTGCCGAGTTCT +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSDPEMT*FSLPSS
Trigger: AGAACTCGGCAGTGAAAAGCAAGTCATTTCTGGGTC...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGACCCAGAAATGACTTaGTTTTCACTGCCGAGTTCT +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPDPEMT*FSLPSS
Trigger: AGAACTCGGCAGTGAAAAGCAAGTCATTTCTGGGTC...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTGGACAGAGCATGGTTTaGTTTCCACCTGGCAAAAGT +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSIGQSMV*FPPGKS
Trigger: ACTTTTGCCAGGTGGAAAGCAAACCATGCTCTGTCC...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGAATCCTGTTTCGAAGTaGTTCCTTTTTCCATCTGCT +
Preference number: 4 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRNPVSK*FLFPSA
Trigger: AGCAGATGGAAAAAGGAACCACTTCGAAACAGGATT...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGTCTGCCCCAGAGGACTaGTCCTCCTCATCCTCATCA +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALSAPED*SSSSSS
Trigger: TGATGAGGATGAGGAGGACCAGTCCTCTGGGGCAGA...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAGTCCGAATTGACTCCTaGGACCTAATCAGGCGCATC +
Preference number: 4 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGVRIDS*DLIRRI
Trigger: GATGCGCCTGATTAGGTCTCAGGAGTCAATTCGGAC...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288462.4
CDS-3UTR TCA 90 bp CTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTAGAGAGACCCAGAAATaGCTTGCTTTTCACTGCCGA +
Preference number: 4 (lower is better)
Translates to: LWNTAAPGDAFSLFLQRLRETQK*LAFHCR
Trigger: TCGGCAGTGAAAAGCAAGTCATTTCTGGGTCTCTCT...AAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp CTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTAACTGGATGTTTATGTaGAGTGCTCTGGATCCCTGG +
Preference number: 4 (lower is better)
Translates to: LWNTAAPGDAFSLFLQRLNWMFM*SALDPW
Trigger: CCAGGGATCCAGAGCACTTCACATAAACATCCAGTT...AAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTCAGGATATCGCAGTaGTGGTCTTTCCAGGGTGAG +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPAFRISQ*WSFQGE
Trigger: CTCACCCTGGAAAGACCAGCACTGCGATATCCTGAA...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAGGCACGATCATCCCTaGTGTTCCTACTCGTGTTCC +
Preference number: 4 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGRHDHP*CSYSCS
Trigger: GGAACACGAGTAGGAACACCAGGGATGATCGTGCCT...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTGTCACTGTTCTGACCTaGCAGAGTTCTGTAACCATA +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSIVTVLT*QSSVTI
Trigger: TATGGTTACAGAACTCTGCCAGGTCAGAACAGTGAC...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGTCACTGTTCTGACCTaGCAGAGTTCTGTAACCATA +
Preference number: 4 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPVTVLT*QSSVTI
Trigger: TATGGTTACAGAACTCTGCCAGGTCAGAACAGTGAC...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTCTTTGGTCTCTCCGTaGAATCCTGTTTCGAAGTGG +
Preference number: 4 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRSLVSP*NPVSKW
Trigger: CCACTTCGAAACAGGATTCCACGGAGAGACCAAAGA...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAATAGTAGTTCATCTTTaGTCTCTCCGTGGAATCCTG +
Preference number: 4 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSIVVHL*SLRGIL
Trigger: CAGGATTCCACGGAGAGACCAAAGATGAACTACTAT...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCATAGTAGTTCATCTTTaGTCTCTCCGTGGAATCCTG +
Preference number: 4 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFIVVHL*SLRGIL
Trigger: CAGGATTCCACGGAGAGACCAAAGATGAACTACTAT...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AAGCCCCTCTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCTGGCACAGCGTCCACTaGAGCACTAATGTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: KPLSSCPYVKRCCPQDTSWHSVH*STNVLV
Trigger: AACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCA...GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGAGATCTTCTTTTGCCTaGCAGCCTGGGCTTCTGGCA +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALRSSFA*QPGLLA
Trigger: TGCCAGAAGCCCAGGCTGCCAGGCAAAAGAAGATCT...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCATCATCATCAGTGTCCTaGAGAATCCTAAGTAGTTTG +
Preference number: 4 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPSSSVS*RILSSL
Trigger: CAAACTACTTAGGATTCTTCAGGACACTGATGATGA...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp CTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTAACCCTTCGGAGGCCTaGCATGAAATTTGGAGTAAA +
Preference number: 4 (lower is better)
Translates to: LWNTAAPGDAFSLFLQRLNPSEA*HEIWSK
Trigger: TTTACTCCAAATTTCATGGCAGGCCTCCGAAGGGTT...AAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCTTTTCTTCTTCCCATaGTGGCTCACATGTATCTCT +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSILFFFP*WLTCIS
Trigger: AGAGATACATGTGAGCCAGCATGGGAAGAAGAAAAG...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAAAGGAGATCTTCTTTTaGCTGGCAGCCTGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALEKEIFF*LAAWAS
Trigger: AGAAGCCCAGGCTGCCAGGCAAAAGAAGATCTCCTT...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCAATCCTGTTTCGAAGTaGTTCCTTTTTCCATCTGCT +
Preference number: 4 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCNPVSK*FLFPSA
Trigger: AGCAGATGGAAAAAGGAACCACTTCGAAACAGGATT...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGTGGCACAGCGTCCACTaGAGCACTAATGTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALWHSVH*STNVLV
Trigger: AACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCA...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAAGATGTCTACCACGGTaGGCACTGGGAGTTTATCTT +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALERCLPR*ALGVYL
Trigger: AAGATAAACTCCCAGTGCTCACCGTGGTAGACATCT...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTTCATCATCAGTGTCCTaGAGAATCCTAAGTAGTTTG +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSISSSVS*RILSSL
Trigger: CAAACTACTTAGGATTCTTCAGGACACTGATGATGA...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAGGACAGAGCATGGTTTaGTTTCCACCTGGCAAAAGT +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALEGQSMV*FPPGKS
Trigger: ACTTTTGCCAGGTGGAAAGCAAACCATGCTCTGTCC...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTGATGTTTATGTGAAGTaGTCTGGATCCCTGGATCAC +
Preference number: 4 (lower is better)
Translates to: SSCPYVKRCCPQDTSHPADVYVK*SGSLDH
Trigger: GTGATCCAGGGATCCAGAGCACTTCACATAAACATC...AGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGGTGGTTTCGTCCCACTaGCTCTCATCTGGCAAGTCC +
Preference number: 4 (lower is better)
Translates to: EVNKENGIPKLRAQALVKVVSSH*LSSGKS
Trigger: GGACTTGCCAGATGAGAGCCAGTGGGACGAAACCAC...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGTACCACGGTGAGCACTaGGAGTTTATCTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALYHGEH*EFIFSI
Trigger: GATGCTGAAGATAAACTCCCAGTGCTCACCGTGGTA...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGAGGCGCATCTCTATATaGCCAGCATTATCCCTGGGC +
Preference number: 4 (lower is better)
Translates to: EVNKENGIPKLRAQALVKRRISI*PALSLG
Trigger: GCCCAGGGATAATGCTGGCCATATAGAGATGCGCCT...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288462.4
CDS-3UTR CCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGTTCAGACAATTGCACTaGGGTTGGGGGAGGCACGAT +
Preference number: 4 (lower is better)
Translates to: EVNKENGIPKLRAQALVKFRQLH*GWGRHD
Trigger: ATCGTGCCTCCCCCAACCCCAGTGCAATTGTCTGAA...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTTTTTATCTTCATCTCTaGACAGAGCATGGTTTGCTT +
Preference number: 4 (lower is better)
Translates to: TSHPALEHGCPRGCLQSIFYLHL*TEHGLL
Trigger: AAGCAAACCATGCTCTGTCCAGAGATGAAGATAAAA...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGTTATGTGAAGTGCTCTaGATCCCTGGATCACTCTTG +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALLCEVL*IPGSLL
Trigger: CAAGAGTGATCCAGGGATCCAGAGCACTTCACATAA...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGGACTTTTTACACTGTaGTGGAAATCCGCATGGTCA +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALGLFTL*WKSAWS
Trigger: TGACCATGCGGATTTCCACCACAGTGTAAAAAGTCC...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGCTTTTCTTCTTCCCATaGTGGCTCACATGTATCTCT +
Preference number: 4 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALLFFFP*WLTCIS
Trigger: AGAGATACATGTGAGCCAGCATGGGAAGAAGAAAAG...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGTCCTACTCGTGTTCCTaGGGACTGATTTCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: EVNKENGIPKLRAQALVKSYSCS*GLISRE
Trigger: CTCTCTGGAAATCAGTCCGCAGGAACACGAGTAGGA...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp AAGCCCCTCTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCGTAGGAAATCTGAACTaGATTGTTCAGACAATTGCA +
Preference number: 4 (lower is better)
Translates to: KPLSSCPYVKRCCPQDTSVGNLN*IVQTIA
Trigger: TGCAATTGTCTGAACAATTCAGTTCAGATTTCCTAC...GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp AAGCCCCTCTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCGCCTGCCATGAAATTTaGAGTAAAACTTTGAACTCT +
Preference number: 4 (lower is better)
Translates to: KPLSSCPYVKRCCPQDTSACHEI*SKTLNS
Trigger: AGAGTTCAAAGTTTTACTCCAAATTTCATGGCAGGC...GCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR TCA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAAGTAGGAAATCTGAACTaGATTGTTCAGACAATTGCA +
Preference number: 4 (lower is better)
Translates to: CPYVKRCCPQDTSHPALEVGNLN*IVQTIA
Trigger: TGCAATTGTCTGAACAATTCAGTTCAGATTTCCTAC...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR GCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGTCAGGGCAGGGAAGTTaGGTCTCATTCAAATTCAAC +
Preference number: 4 (lower is better)
Translates to: EVNKENGIPKLRAQALVKSGQGS*VSFKFN
Trigger: GTTGAATTTGAATGAGACGCAACTTCCCTGCCCTGA...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAGCCTGCCATGAAATTTaGAGTAAAACTTTGAACTCT +
Preference number: 4 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGACHEI*SKTLNS
Trigger: AGAGTTCAAAGTTTTACTCCAAATTTCATGGCAGGC...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CCA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGGGACTTTTTACACTGTaGTGGAAATCCGCATGGTCA +
Preference number: 4 (lower is better)
Translates to: EVNKENGIPKLRAQALVKGLFTL*WKSAWS
Trigger: TGACCATGCGGATTTCCACCACAGTGTAAAAAGTCC...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp AACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAACCAGCCATCCCGCTTaGGAACACGGCTGCCCCAGG +
Preference number: 5 (lower is better)
Translates to: NVAALRIPAIPLWNTAAPTSHPA*EHGCPR
Trigger: CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT...TGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCACCAGCCATCCCGCTTaGGAACACGGCTGCCCCAGG +
Preference number: 5 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFTSHPA*EHGCPR
Trigger: CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGTAAAACGTGGCCCCTaGCGGCGCGGTGAGATTAAC +
Preference number: 5 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRVKRGP*RRGEIN
Trigger: GTTAATCTCACCGCGCCGCAAGGGGCCACGTTTTAC...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGACAATTGCACTGGGGTaGGGGGAGGCACGATCATCC +
Preference number: 5 (lower is better)
Translates to: QDTSHPALEHGCPRGCLQTIALG*GEARSS
Trigger: GGATGATCGTGCCTCCCCCAACCCCAGTGCAATTGT...CTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS GCA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTaGCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTCTCAC +
Preference number: 5 (lower is better)
Translates to: RCCPQDTSHPALEHG*PRGCLQSIPPEASH
Trigger: GTGAGAAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGAAAGGAGATCTTCTTTaGCCTGGCAGCCTGGGCTTC +
Preference number: 5 (lower is better)
Translates to: LPSGYQPSRFGTRLPQGMKGDLL*PGSLGF
Trigger: GAAGCCCAGGCTGCCAGGCAAAAGAAGATCTCCTTT...CATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGAAGCCCCTCTCCTCTaGCCCTTATGTGAAACGTTG +
Preference number: 5 (lower is better)
Translates to: RCCPQDTSHPALEHGCPREAPLL*PLCETL
Trigger: CAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTTC...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 90 bp TGGCCCCTCTCAATGCGGCGGATAGTTGCCCAGCATTGTGGGTGCTaGCAAACAGCCAAGCCACAGGTGGTTTCGTCCCACTGGCTCTCA +
Preference number: 5 (lower is better)
Translates to: WPLSMRRIVAQHCGC*QTAKPQVVSSHWLS
Trigger: TGAGAGCCAGTGGGACGAAACCACCTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACTATCCGCCGCATTGAGAGGGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS CCA 90 bp TCGAGGATGGCCCCTCTCAATGCGGCGGATAGTTGCCCAGCATTGTaGGTGCTGACAAACAGCCAAGCCACAGGTGGTTTCGTCCCACTG +
Preference number: 5 (lower is better)
Translates to: SRMAPLNAADSCPAL*VLTNSQATGGFVPL
Trigger: CAGTGGGACGAAACCACCTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACTATCCGCCGCATTGAGAGGGGCCATCCTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS-3UTR CAA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGTAAAACGTGGCCCCTaGCGGCGCGGTGAGATTAAC +
Preference number: 5 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPVKRGP*RRGEIN
Trigger: GTTAATCTCACCGCGCCGCAAGGGGCCACGTTTTAC...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGAGACCCAGAAATGACTaGCTTTTCACTGCCGAGTTC +
Preference number: 5 (lower is better)
Translates to: LPSGYQPSRFGTRLPQGMRPRND*LFTAEF
Trigger: GAACTCGGCAGTGAAAAGCAAGTCATTTCTGGGTCT...CATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCTTTCACCTTCTTCTGTaGCTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCFHLLL*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAGCAACAGAAGAAGGTGAAA...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCAAAGGAGATCTTCTTTaGCCTGGCAGCCTGGGCTTC +
Preference number: 5 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFKGDLL*PGSLGF
Trigger: GAAGCCCAGGCTGCCAGGCAAAAGAAGATCTCCTTT...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCGAAGCCCCTCTCCTCTaGCCCTTATGTGAAACGTTG +
Preference number: 5 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCEAPLL*PLCETL
Trigger: CAACGTTTCACATAAGGGCAAGAGGAGAGGGGCTTC...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp ACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTGATAGTTGCCCAGCATaGTGGGTGCTGACAAACAGC +
Preference number: 5 (lower is better)
Translates to: TSHPALEHGCPRGCLQSIDSCPA*WVLTNS
Trigger: GCTGTTTGTCAGCACCCACAATGCTGGGCAACTATC...AATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGTTCAGGGCAGGGAAGTaGCGTCTCATTCAAATTCAA +
Preference number: 5 (lower is better)
Translates to: LPSGYQPSRFGTRLPQGMFRAGK*RLIQIQ
Trigger: TTGAATTTGAATGAGACGCAACTTCCCTGCCCTGAA...CATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCATAGTAGTTCATCTTaGGTCTCTCCGTGGAATCCT +
Preference number: 5 (lower is better)
Translates to: LPSGYQPSRFGTRLPQGMHSSSS*VSPWNP
Trigger: AGGATTCCACGGAGAGACCAAAGATGAACTACTATG...CATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCAGACCCAGAAATGACTaGCTTTTCACTGCCGAGTTC +
Preference number: 5 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFRPRND*LFTAEF
Trigger: GAACTCGGCAGTGAAAAGCAAGTCATTTCTGGGTCT...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGAGGCTTTTTCACCTTCTTCTGTaGCTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LWNTAAPGDAFSLFLQRLFHLLL*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAGCAACAGAAGAAGGTGAAA...AAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCCCCTTATGTGAAACGTaGCTGCCCTCAGGATACCAG +
Preference number: 5 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRPLCET*LPSGYQ
Trigger: CTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGG...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGTTCAACACTGGAAATTaGGGAAGTCTGTTAGTACAG +
Preference number: 5 (lower is better)
Translates to: RCCPQDTSHPALEHGCPRFNTGN*GSLLVQ
Trigger: CTGTACTAACAGACTTCCCAAATTTCCAGTGTTGAA...CCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCTTCAGGGCAGGGAAGTaGCGTCTCATTCAAATTCAA +
Preference number: 5 (lower is better)
Translates to: PAIPLWNTAAPGDAFSLFFRAGK*RLIQIQ
Trigger: TTGAATTTGAATGAGACGCAACTTCCCTGCCCTGAA...GAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 90 bp GGAGGCACGATCATCCCTGGTGTTCCTACTCGTGTTCCTGCGGACTaGTTTCCAGAGAGACCCAGAAATGACTTGCTTTTCACTGCCGAG +
Preference number: 5 (lower is better)
Translates to: GGTIIPGVPTRVPAD*FPERPRNDLLFTAE
Trigger: CTCGGCAGTGAAAAGCAAGTCATTTCTGGGTCTCTCTGGAAATCAGTCCGCAGGAACACGAGTAGGAACACCAGGGATGATCGTGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp TCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCACAGTTGATCAAACTTTaGTCAGGTAAACCCTTCGGA +
Preference number: 5 (lower is better)
Translates to: SGYQPSRFGTRLPQGMPSQLIKL*SGKPFG
Trigger: TCCGAAGGGTTTACCTGACAAAAGTTTGATCAACTG...TGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGAGTCTGTTAGTACAGTaGATCAAACTTTTGTCAGGT +
Preference number: 5 (lower is better)
Translates to: LPSGYQPSRFGTRLPQGMSLLVQ*IKLLSG
Trigger: ACCTGACAAAAGTTTGATCAACTGTACTAACAGACT...CATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CATCCCGCTTTGGAACACGGCTGCCCCAGGGGATGCCTTCAGTCTATTCCTCCAGGAGCACTAATGTCCTaGTTAGTGGGTTCTGTTTCA +
Preference number: 5 (lower is better)
Translates to: HPALEHGCPRGCLQSIPPGALMS*LVGSVS
Trigger: TGAAACAGAACCCACTAACAAGGACATTAGTGCTCC...TGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACCCTTATGTGAAACGTaGCTGCCCTCAGGATACCAG +
Preference number: 5 (lower is better)
Translates to: CPYVKRCCPQDTSHPALEPLCET*LPSGYQ
Trigger: CTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGG...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCCATAGTAGTTCATCTTaGGTCTCTCCGTGGAATCCT +
Preference number: 5 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRHSSSS*VSPWNP
Trigger: AGGATTCCACGGAGAGACCAAAGATGAACTACTATG...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 90 bp GAGGTAACGCTTCGGATTGAGCCCAGAGAGGTAGGAAATCTGAACTaGATTGTTCAGACAATTGCACTGGGGTTGGGGGAGGCACGATCA +
Preference number: 5 (lower is better)
Translates to: EVTLRIEPREVGNLN*IVQTIALGLGEARS
Trigger: TGATCGTGCCTCCCCCAACCCCAGTGCAATTGTCTGAACAATTCAGTTCAGATTTCCTACCTCTCTGGGCTCAATCCGAAGCGTTACCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CTCCTCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCCCAAACCGCTTAGGGTaGCTAAATCAAGTGGTAAAA +
Preference number: 5 (lower is better)
Translates to: LLLPLCETLLPSGYQPSRPNRLG*LNQVVK
Trigger: TTTTACCACTTGATTTAGCAACCCTAAGCGGTTTGG...GCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp CAGAGCTCAGGCCCTGGTAAAGGCTCCAGAGAGCAGAAGCCCCTCTCCTCTTGCAGTCTGTTAGTACAGTaGATCAAACTTTTGTCAGGT +
Preference number: 5 (lower is better)
Translates to: QSSGPGKGSREQKPLSSCSLLVQ*IKLLSG
Trigger: ACCTGACAAAAGTTTGATCAACTGTACTAACAGACT...GCAAGAGGAGAGGGGCTTCTGCTCTCTGGAGCCTTTACCAGGGCCTGAGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp TCTTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGATCCCTGGATCACTCTaGGCTTTCTTTTTAGCCTCC +
Preference number: 5 (lower is better)
Translates to: SCPYVKRCCPQDTSHPALIPGSL*AFFLAS
Trigger: GGAGGCTAAAAAGAAAGCCAAGAGTGATCCAGGGAT...CAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CCA 90 bp GATCTTCTTTTGCCTGGCAGCCTGGGCTTCTGGCACAGCGTCCACTaGAGCACTAATGTCCTTGTTAGTGGGTTCTGTTTCATACAATTC +
Preference number: 5 (lower is better)
Translates to: DLLLPGSLGFWHSVH*STNVLVSGFCFIQF
Trigger: GAATTGTATGAAACAGAACCCACTAACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGCCAGGCAAAAGAAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp TGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGAACCAAACCGCTTAGGGTaGCTAAATCAAGTGGTAAAA +
Preference number: 5 (lower is better)
Translates to: CPYVKRCCPQDTSHPALEPNRLG*LNQVVK
Trigger: TTTTACCACTTGATTTAGCAACCCTAAGCGGTTTGG...TTCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGACAGTTGATCAAACTTTaGTCAGGTAAACCCTTCGGA +
Preference number: 5 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGQLIKL*SGKPFG
Trigger: TCCGAAGGGTTTACCTGACAAAAGTTTGATCAACTG...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp TTGCCCTTATGTGAAACGTTGCTGCCCTCAGGATACCAGCCATCCCGCTTTGGATTCAACACTGGAAATTaGGGAAGTCTGTTAGTACAG +
Preference number: 5 (lower is better)
Translates to: LPLCETLLPSGYQPSRFGFNTGN*GSLLVQ
Trigger: CTGTACTAACAGACTTCCCAAATTTCCAGTGTTGAA...TCCAAAGCGGGATGGCTGGTATCCTGAGGGCAGCAACGTTTCACATAAGGGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS-3UTR CAA 90 bp GAGGTGAACAAAGAAAATGGAATCCCTAAGCTCAGAGCTCAGGCCCTGGTAAAGATCCCTGGATCACTCTaGGCTTTCTTTTTAGCCTCC +
Preference number: 5 (lower is better)
Translates to: EVNKENGIPKLRAQALVKIPGSL*AFFLAS
Trigger: GGAGGCTAAAAAGAAAGCCAAGAGTGATCCAGGGAT...CTTTACCAGGGCCTGAGCTCTGAGCTTAGGGATTCCATTTTCTTTGTTCACCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 90 bp GTAACCATAGAGACGGTCATGAACGGTGGTAACTGGATGTTTATGTaGAGTGCTCTGGATCCCTGGATCACTCTTGGCTTTCTTTTTAGC +
Preference number: 5 (lower is better)
Translates to: VTIETVMNGGNWMFM*SALDPWITLGFLFS
Trigger: GCTAAAAAGAAAGCCAAGAGTGATCCAGGGATCCAGAGCACTTCACATAAACATCCAGTTACCACCGTTCATGACCGTCTCTATGGTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CCA 90 bp ATAATTTCTGAAAAGTTAAAGGAGATCTTCTTTTGCCTGGCAGCCTaGGCTTCTGGCACAGCGTCCACTGGAGCACTAATGTCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: IISEKLKEIFFCLAA*ASGTASTGALMSLL
Trigger: TAACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGCCAGGCAAAAGAAGATCTCCTTTAACTTTTCAGAAATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS GCA 90 bp ATCCACAATACAACCATATTTCTAACATCTTCAGGGCAGGGAAGTTaGGTCTCATTCAAATTCAACACTGGAAATTTGGGAAGTCTGTTA +
Preference number: 5 (lower is better)
Translates to: IHNTTIFLTSSGQGS*VSFKFNTGNLGSLL
Trigger: TAACAGACTTCCCAAATTTCCAGTGTTGAATTTGAATGAGACGCAACTTCCCTGCCCTGAAGATGTTAGAAATATGGTTGTATTGTGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 90 bp CCAAACCGCTTAGGGTTGCTAAATCAAGTGGTAAAACGTGGCCCCTaGCGGCGCGGTGAGATTAACGGACCCGGCGGGCCCAGAGCCTGC +
Preference number: 6 (lower is better)
Translates to: PNRLGLLNQVVKRGP*RRGEINGPGGPRAC
Trigger: GCAGGCTCTGGGCCCGCCGGGTCCGTTAATCTCACCGCGCCGCAAGGGGCCACGTTTTACCACTTGATTTAGCAACCCTAAGCGGTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 72 bp TTAGGGTTGCTAAATCAAGTGGTAAAACGTGGCCCCTaGCGGCGCGGTGAGATTAACGGACCCGGCGGGCCC +
Preference number: 6 (lower is better)
Translates to: LGLLNQVVKRGP*RRGEINGPGGP
Trigger: GGGCCCGCCGGGTCCGTTAATCTCACCGCGCCGCAAGGGGCCACGTTTTACCACTTGATTTAGCAACCCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 90 bp GATTCGAGGATGGCCCCTCTCAATGCGGCGGATAGTTGCCCAGCATaGTGGGTGCTGACAAACAGCCAAGCCACAGGTGGTTTCGTCCCA +
Preference number: 6 (lower is better)
Translates to: DSRMAPLNAADSCPA*WVLTNSQATGGFVP
Trigger: TGGGACGAAACCACCTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACTATCCGCCGCATTGAGAGGGGCCATCCTCGAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS GCA 72 bp GATTCGAGGATGGCCCCTCTCAATGCGGCGGATAGTTaGCCAGCATTGTGGGTGCTGACAAACAGCCAAGCC +
Preference number: 6 (lower is better)
Translates to: DSRMAPLNAADS*PALWVLTNSQA
Trigger: GGCTTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACTATCCGCCGCATTGAGAGGGGCCATCCTCGAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS GCA 72 bp AGCCATCCCGCTTTGGAACACGGCTGCCCCAGGGGATaGCTTCAGTCTATTCCTCCAGAGGCTTCTCACTCT +
Preference number: 6 (lower is better)
Translates to: SHPALEHGCPRG*LQSIPPEASHS
Trigger: AGAGTGAGAAGCCTCTGGAGGAATAGACTGAAGGCATCCCCTGGGGCAGCCGTGTTCCAAAGCGGGATGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 72 bp ATGGCCCCTCTCAATGCGGCGGATAGTTGCCCAGCATaGTGGGTGCTGACAAACAGCCAAGCCACAGGTGGT +
Preference number: 6 (lower is better)
Translates to: MAPLNAADSCPA*WVLTNSQATGG
Trigger: ACCACCTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACTATCCGCCGCATTGAGAGGGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS TCA 72 bp TCAATGCGGCGGATAGTTGCCCAGCATTGTGGGTGCTaGCAAACAGCCAAGCCACAGGTGGTTTCGTCCCAC +
Preference number: 6 (lower is better)
Translates to: SMRRIVAQHCGC*QTAKPQVVSSH
Trigger: GTGGGACGAAACCACCTGTGGCTTGGCTGTTTGTCAGCACCCACAATGCTGGGCAACTATCCGCCGCATTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS GCA 72 bp ATGCCTTCAGTCTATTCCTCCAGAGGCTTCTCACTCTaGCCCAGAGGACTGGTCCTCCTCATCCTCATCATC +
Preference number: 6 (lower is better)
Translates to: MPSVYSSRGFSL*PRGLVLLILII
Trigger: GATGATGAGGATGAGGAGGACCAGTCCTCTGGGGCAGAGTGAGAAGCCTCTGGAGGAATAGACTGAAGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 72 bp GAGCTGCAAAGCCGGAATCTAAGATGTCTACCACGGTaGGCACTGGGAGTTTATCTTCAGCATCCAGGGGAG +
Preference number: 6 (lower is better)
Translates to: ELQSRNLRCLPR*ALGVYLQHPGE
Trigger: CTCCCCTGGATGCTGAAGATAAACTCCCAGTGCTCACCGTGGTAGACATCTTAGATTCCGGCTTTGCAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288462.4
ENST00000374165.6
ENST00000490544.1
CDS CCA 72 bp AAAGGAGATCTTCTTTTGCCTGGCAGCCTGGGCTTCTaGCACAGCGTCCACTGGAGCACTAATGTCCTTGTT +
Preference number: 6 (lower is better)
Translates to: KGDLLLPGSLGF*HSVHWSTNVLV
Trigger: AACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGCCAGGCAAAAGAAGATCTCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 72 bp AGCATTCTAGTGCTCTGCCCAGTCCGAATTGACTCCTaGGACCTAATCAGGCGCATCTCTATATGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: SILVLCPVRIDS*DLIRRISIWPA
Trigger: TGCTGGCCATATAGAGATGCGCCTGATTAGGTCTCAGGAGTCAATTCGGACTGGGCAGAGCACTAGAATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288462.4
CDS TCA 72 bp ACCCTGCAGCATTCTAGTGCTCTGCCCAGTCCGAATTaGCTCCTGAGACCTAATCAGGCGCATCTCTATATG +
Preference number: 6 (lower is better)
Translates to: TLQHSSALPSPN*LLRPNQAHLYM
Trigger: CATATAGAGATGCGCCTGATTAGGTCTCAGGAGTCAATTCGGACTGGGCAGAGCACTAGAATGCTGCAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288462.4
CDS CAA 72 bp CCTGTGAGAGCAAAGCAGATTCCAAACCGCTTAGGGTaGCTAAATCAAGTGGTAAAACGTGGCCCCTTGCGG +
Preference number: 6 (lower is better)
Translates to: PVRAKQIPNRLG*LNQVVKRGPLR
Trigger: CCGCAAGGGGCCACGTTTTACCACTTGATTTAGCAACCCTAAGCGGTTTGGAATCTGCTTTGCTCTCACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 72 bp CTTCGGATTGAGCCCAGAGAGGTAGGAAATCTGAACTaGATTGTTCAGACAATTGCACTGGGGTTGGGGGAG +
Preference number: 6 (lower is better)
Translates to: LRIEPREVGNLN*IVQTIALGLGE
Trigger: CTCCCCCAACCCCAGTGCAATTGTCTGAACAATTCAGTTCAGATTTCCTACCTCTCTGGGCTCAATCCGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 90 bp GCAGCCTGGGCTTCTGGCACAGCGTCCACTGGAGCACTAATGTCCTaGTTAGTGGGTTCTGTTTCATACAATTCAGGACTTTTTACACTG +
Preference number: 6 (lower is better)
Translates to: AAWASGTASTGALMS*LVGSVSYNSGLFTL
Trigger: CAGTGTAAAAAGTCCTGAATTGTATGAAACAGAACCCACTAACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 72 bp ATCATCCCTGGTGTTCCTACTCGTGTTCCTGCGGACTaGTTTCCAGAGAGACCCAGAAATGACTTGCTTTTC +
Preference number: 6 (lower is better)
Translates to: IIPGVPTRVPAD*FPERPRNDLLF
Trigger: GAAAAGCAAGTCATTTCTGGGTCTCTCTGGAAATCAGTCCGCAGGAACACGAGTAGGAACACCAGGGATGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 72 bp TGTGGTGGAAATCCGCATGGTCATAGTAGTTCATCTTaGGTCTCTCCGTGGAATCCTGTTTCGAAGTGGTTC +
Preference number: 6 (lower is better)
Translates to: CGGNPHGHSSSS*VSPWNPVSKWF
Trigger: GAACCACTTCGAAACAGGATTCCACGGAGAGACCAAAGATGAACTACTATGACCATGCGGATTTCCACCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 72 bp GCTTCTGGCACAGCGTCCACTGGAGCACTAATGTCCTaGTTAGTGGGTTCTGTTTCATACAATTCAGGACTT +
Preference number: 6 (lower is better)
Translates to: ASGTASTGALMS*LVGSVSYNSGL
Trigger: AAGTCCTGAATTGTATGAAACAGAACCCACTAACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCAGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS TCA 72 bp GAGCTCAGAGTTCCAGCCTGTGCTAGCCATAATTTCTaGAAAGTTAAAGGAGATCTTCTTTTGCCTGGCAGC +
Preference number: 6 (lower is better)
Translates to: ELRVPACASHNF*KVKGDLLLPGS
Trigger: GCTGCCAGGCAAAAGAAGATCTCCTTTAACTTTTCAGAAATTATGGCTAGCACAGGCTGGAACTCTGAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CCA 72 bp TCATGGCCAATTTTATCTTCATCTCTGGACAGAGCATaGTTTGCTTTCCACCTGGCAAAAGTTCCTTCAGTA +
Preference number: 6 (lower is better)
Translates to: SWPILSSSLDRA*FAFHLAKVPSV
Trigger: TACTGAAGGAACTTTTGCCAGGTGGAAAGCAAACCATGCTCTGTCCAGAGATGAAGATAAAATTGGCCATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6
CDS CAA 90 bp GATCCACAATACAACCATATTTCTAACATCTTCAGGGCAGGGAAGTaGCGTCTCATTCAAATTCAACACTGGAAATTTGGGAAGTCTGTT +
Preference number: 6 (lower is better)
Translates to: DPQYNHISNIFRAGK*RLIQIQHWKFGKSV
Trigger: AACAGACTTCCCAAATTTCCAGTGTTGAATTTGAATGAGACGCAACTTCCCTGCCCTGAAGATGTTAGAAATATGGTTGTATTGTGGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000288462.4
ENST00000374165.6