Pregenerated sensors for C9ORF135-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000225626Ensembl transcript IDs: ENST00000439418.1, ENST00000453410.1, ENST00000526458.1, ENST00000652595.1, ENST00000655860.1, ENST00000660402.1, ENST00000662063.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCGGGGATCTGAATGCCCGGAGTCCTAAACTGTACCTAGAGTCTTaGAGCGTCATAGCCAGAAGGGACTTGCGATTCTTGTGCCCACTC | + |
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Preference number: 5 (lower is better) Translates to: PGDLNARSPKLYLES*SVIARRDLRFLCPL Trigger: GAGTGGGCACAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCAAGACTCTAGGTACAGTTTAGGACTCCGGGCATTCAGATCCCCGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS GCA 90 bp | CTAGAGTCTTGCAGCGTCATAGCCAGAAGGGACTTGCGATTCTTGTaGCCACTCCACTCTACGGTCCCGTTCCCTCTTTCGTTTTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: LESCSVIARRDLRFL*PLHSTVPFPLSFFR Trigger: TCTGAAAAACGAAAGAGGGAACGGGACCGTAGAGTGGAGTGGGCACAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCAAGACTCTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CCA 90 bp | TGGTGTGCTGAAAAGCTTTTAAATCTCTGTGGTACTTATGCACTGTaGAAAGAGCTTGGCCTTGGGCAGCTTCCATCTTTGAGAGAAATT | + |
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Preference number: 5 (lower is better) Translates to: WCAEKLLNLCGTYAL*KELGLGQLPSLREI Trigger: AATTTCTCTCAAAGATGGAAGCTGCCCAAGGCCAAGCTCTTTCCACAGTGCATAAGTACCACAGAGATTTAAAAGCTTTTCAGCACACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662063.1 |
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| CDS TCA 90 bp | CATTCAACAATGAAGATATCTGTATTAAGGACTATGCTGGGTAAGTaGTTGCAAGGAGGAAGTGCTTTAATGCCCCTCAGGTACTCGACT | + |
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Preference number: 5 (lower is better) Translates to: HSTMKISVLRTMLGK*LQGGSALMPLRYST Trigger: AGTCGAGTACCTGAGGGGCATTAAAGCACTTCCTCCTTGCAATCACTTACCCAGCATAGTCCTTAATACAGATATCTTCATTGTTGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS GCA 90 bp | AAAGAGCTTGGCCTTGGGCAGCTTCCATCTTTGAGAGAAATTGTCTaGAGAGATCTGACATATTGGTTTCACATATATTATGTTACCGCC | + |
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Preference number: 5 (lower is better) Translates to: KELGLGQLPSLREIV*RDLTYWFHIYYVTA Trigger: GGCGGTAACATAATATATGTGAAACCAATATGTCAGATCTCTGCAGACAATTTCTCTCAAAGATGGAAGCTGCCCAAGGCCAAGCTCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662063.1 |
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| CDS CCA 90 bp | CAGCTTCCATCTTTGAGAGAAATTGTCTGCAGAGATCTGACATATTaGTTTCACATATATTATGTTACCGCCACTCTAAACGTAAGTAAA | + |
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Preference number: 5 (lower is better) Translates to: QLPSLREIVCRDLTY*FHIYYVTATLNVSK Trigger: TTTACTTACGTTTAGAGTGGCGGTAACATAATATATGTGAAACCAATATGTCAGATCTCTGCAGACAATTTCTCTCAAAGATGGAAGCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662063.1 |
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| CDS CAA 90 bp | GGGAAATGTAGTTTCTTATCAGTAACGACAACGTCTAGGAAACGTTaGGCCGTCAGGTTGGAGGGATCCGCCCCTCCACTGGCCCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: GKCSFLSVTTTSRKR*AVRLEGSAPPLAPP Trigger: GGGCGGGGCCAGTGGAGGGGCGGATCCCTCCAACCTGACGGCCAAACGTTTCCTAGACGTTGTCGTTACTGATAAGAAACTACATTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655860.1 |
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| CDS GCA 72 bp | TGCAGCGTCATAGCCAGAAGGGACTTGCGATTCTTGTaGCCACTCCACTCTACGGTCCCGTTCCCTCTTTCG | + |
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Preference number: 6 (lower is better) Translates to: CSVIARRDLRFL*PLHSTVPFPLS Trigger: CGAAAGAGGGAACGGGACCGTAGAGTGGAGTGGGCACAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CCA 72 bp | AATAACTGCGCTCAGCCACTCTTAGGATTTGGCGGGTaGACAGGCGAAACTGCGGATCCCAGGATGCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: NNCAQPLLGFGG*TGETADPRMQF Trigger: GAACTGCATCCTGGGATCCGCAGTTTCGCCTGTCCACCCGCCAAATCCTAAGAGTGGCTGAGCGCAGTTATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000453410.1 ENST00000526458.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CAA 72 bp | TCTTGCAGCGTCATAGCCAGAAGGGACTTGCGATTCTaGTGCCCACTCCACTCTACGGTCCCGTTCCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SCSVIARRDLRF*CPLHSTVPFPL Trigger: AAGAGGGAACGGGACCGTAGAGTGGAGTGGGCACAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CAA 72 bp | TACCTAGAGTCTTGCAGCGTCATAGCCAGAAGGGACTaGCGATTCTTGTGCCCACTCCACTCTACGGTCCCG | + |
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Preference number: 6 (lower is better) Translates to: YLESCSVIARRD*RFLCPLHSTVP Trigger: CGGGACCGTAGAGTGGAGTGGGCACAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCAAGACTCTAGGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CAA 90 bp | CCTAAACTGTACCTAGAGTCTTGCAGCGTCATAGCCAGAAGGGACTaGCGATTCTTGTGCCCACTCCACTCTACGGTCCCGTTCCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: PKLYLESCSVIARRD*RFLCPLHSTVPFPL Trigger: AAGAGGGAACGGGACCGTAGAGTGGAGTGGGCACAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCAAGACTCTAGGTACAGTTTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CAA 72 bp | AGTTTCTTATCAGTAACGACAACGTCTAGGAAACGTTaGGCCGTCAGGTTGGAGGGATCCGCCCCTCCACTG | + |
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Preference number: 6 (lower is better) Translates to: SFLSVTTTSRKR*AVRLEGSAPPL Trigger: CAGTGGAGGGGCGGATCCCTCCAACCTGACGGCCAAACGTTTCCTAGACGTTGTCGTTACTGATAAGAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655860.1 |
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| CDS GCA 72 bp | CTGAATGCCCGGAGTCCTAAACTGTACCTAGAGTCTTaGAGCGTCATAGCCAGAAGGGACTTGCGATTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LNARSPKLYLES*SVIARRDLRFL Trigger: CAAGAATCGCAAGTCCCTTCTGGCTATGACGCTGCAAGACTCTAGGTACAGTTTAGGACTCCGGGCATTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS TCA 72 bp | CTCCTCCTCTTTTGCAGGCAGGAAAGCTGTATAGAATaGCAAACTTTGGGTTTCAGGGGATGTTCTCTCGTT | + |
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Preference number: 6 (lower is better) Translates to: LLLFCRQESCIE*QTLGFRGCSLV Trigger: AACGAGAGAACATCCCCTGAAACCCAAAGTTTGTCATTCTATACAGCTTTCCTGCCTGCAAAAGAGGAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000526458.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS TCA 72 bp | AATAGAGACCTTAGCATACCACAGGCACCCACACTATaGACCACAGACCACGGAAAAGCACTTAGTAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: NRDLSIPQAPTL*TTDHGKALSSY Trigger: ATAACTACTAAGTGCTTTTCCGTGGTCTGTGGTTCATAGTGTGGGTGCCTGTGGTATGCTAAGGTCTCTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000439418.1 ENST00000655860.1 ENST00000662063.1 |
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| CDS CCA 72 bp | GAAAAGCTTTTAAATCTCTGTGGTACTTATGCACTGTaGAAAGAGCTTGGCCTTGGGCAGCTTCCATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: EKLLNLCGTYAL*KELGLGQLPSL Trigger: CAAAGATGGAAGCTGCCCAAGGCCAAGCTCTTTCCACAGTGCATAAGTACCACAGAGATTTAAAAGCTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662063.1 |
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| CDS TCA 72 bp | ATGAAGATATCTGTATTAAGGACTATGCTGGGTAAGTaGTTGCAAGGAGGAAGTGCTTTAATGCCCCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: MKISVLRTMLGK*LQGGSALMPLR Trigger: CCTGAGGGGCATTAAAGCACTTCCTCCTTGCAATCACTTACCCAGCATAGTCCTTAATACAGATATCTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CAA 90 bp | TCAAACTTTTTAGGTGATTTGCTGGATGAGTCTGCTCCTCCTCTTTaGCAGGCAGGAAAGCTGTATAGAATGACAAACTTTGGGTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SNFLGDLLDESAPPL*QAGKLYRMTNFGFQ Trigger: CTGAAACCCAAAGTTTGTCATTCTATACAGCTTTCCTGCCTGCAAAAGAGGAGGAGCAGACTCATCCAGCAAATCACCTAAAAAGTTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENST00000439418.1 ENST00000453410.1 ENST00000526458.1 ENST00000652595.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS GCA 72 bp | TATGTAATCAAATTTGTGCCATCTGATACAGAAGAGTaGCTCACTATTTATGGGAGCACTATAACACATCTT | + |
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Preference number: 6 (lower is better) Translates to: YVIKFVPSDTEE*LTIYGSTITHL Trigger: AAGATGTGTTATAGTGCTCCCATAAATAGTGAGGCACTCTTCTGTATCAGATGGCACAAATTTGATTACATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000439418.1 ENST00000655860.1 ENST00000660402.1 ENST00000662063.1 |
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| CDS CCA 72 bp | TCTTTGAGAGAAATTGTCTGCAGAGATCTGACATATTaGTTTCACATATATTATGTTACCGCCACTCTAAAC | + |
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Preference number: 6 (lower is better) Translates to: SLREIVCRDLTY*FHIYYVTATLN Trigger: GTTTAGAGTGGCGGTAACATAATATATGTGAAACCAATATGTCAGATCTCTGCAGACAATTTCTCTCAAAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662063.1 |
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| CDS CAA 72 bp | AGCAATATTCTGTGCTTTGATTGGACAGAATTGAGCTaGACATGGATCATATTTCCCCTTTTAAAGTTAACT | + |
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Preference number: 6 (lower is better) Translates to: SNILCFDWTELS*TWIIFPLLKLT Trigger: AGTTAACTTTAAAAGGGGAAATATGATCCATGTCAAGCTCAATTCTGTCCAATCAAAGCACAGAATATTGCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000655860.1 ENST00000662063.1 |
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