Pregenerated sensors for C9ORF129 (Homo sapiens)
Ensembl gene IDs: ENSG00000204352Ensembl transcript IDs: ENST00000648864.1, ENST00000649569.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTGCTAGGTGAGCCCTGCTTTGTCCTCAGTAGAGTGCCGGTTCCCTaGGCTCATCCAGGGGCTGAGAGACGGCGGGACGCTGGGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LLGEPCFVLSRVPVP*AHPGAERRRDAGAG Trigger: CCCTGCCCCAGCGTCCCGCCGTCTCTCAGCCCCTGGATGAGCCCAGGGAACCGGCACTCTACTGAGGACAAAGCAGGGCTCACCTAGCAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS TCA 90 bp | TCCAAACGGACCGGGTCTGGCTGCCACGTAGTGTGGTGGCTGCAGTaGCCGAGGCTTGCTGGTCCCAGAATAATGTCCGCTTGCTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: SKRTGSGCHVVWWLQ*PRLAGPRIMSACSV Trigger: AACAGAGCAAGCGGACATTATTCTGGGACCAGCAAGCCTCGGTCACTGCAGCCACCACACTACGTGGCAGCCAGACCCGGTCCGTTTGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648864.1 ENST00000649569.1 |
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| CDS GCA 90 bp | CGGGTCTGGCTGCCACGTAGTGTGGTGGCTGCAGTGACCGAGGCTTaGTGGTCCCAGAATAATGTCCGCTTGCTCTGTTACATCCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: RVWLPRSVVAAVTEA*WSQNNVRLLCYIPE Trigger: TTCTGGGATGTAACAGAGCAAGCGGACATTATTCTGGGACCAGCAAGCCTCGGTCACTGCAGCCACCACACTACGTGGCAGCCAGACCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648864.1 ENST00000649569.1 |
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| CDS TCA 90 bp | GCTGGTCCCAGAATAATGTCCGCTTGCTCTGTTACATCCCAGAACTaGTTCTCAGGGATTGGGATCTGGAAGATGCTCGGCAGGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: AGPRIMSACSVTSQN*FSGIGIWKMLGRRL Trigger: CAGCCTCCTGCCGAGCATCTTCCAGATCCCAATCCCTGAGAATCAGTTCTGGGATGTAACAGAGCAAGCGGACATTATTCTGGGACCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS GCA 90 bp | TTAGCTACCTTAAGTATTGAAGAGCTTCCATTGCTAGGTGAGCCCTaGTTTGTCCTCAGTAGAGTGCCGGTTCCCTGGGCTCATCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LATLSIEELPLLGEP*FVLSRVPVPWAHPG Trigger: CCCTGGATGAGCCCAGGGAACCGGCACTCTACTGAGGACAAAGCAGGGCTCACCTAGCAATGGAAGCTCTTCAATACTTAAGGTAGCTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS GCA 72 bp | AGCAGGGTCGGGCTGAGCCCAGCATGGGCTCCAGGCTaGGCGAGCGAGATACCCCGGTCCCCGCCTCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: SRVGLSPAWAPG*ASEIPRSPPPP Trigger: AGGCGGAGGCGGGGACCGGGGTATCTCGCTCGCGCAGCCTGGAGCCCATGCTGGGCTCAGCCCGACCCTGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CCA 72 bp | GGCAGCGGCCAAAGCAGGGTCGGGCTGAGCCCAGCATaGGCTCCAGGCTGCGCGAGCGAGATACCCCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: GSGQSRVGLSPA*APGCASEIPRS Trigger: GGACCGGGGTATCTCGCTCGCGCAGCCTGGAGCCCATGCTGGGCTCAGCCCGACCCTGCTTTGGCCGCTGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CAA 72 bp | GCGGGACGCTGGGGCAGGGCACACTGGCGGAGCTGCTaGCTCAGTAGGGAATGTCAGTTGTTGCGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: AGRWGRAHWRSC*LSRECQLLRWA Trigger: GGCCCAGCGCAACAACTGACATTCCCTACTGAGCAAGCAGCTCCGCCAGTGTGCCCTGCCCCAGCGTCCCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS GCA 72 bp | CCCAGAACTGATTCTCAGGGATTGGGATCTGGAAGATaGTCGGCAGGAGGCTGCGGCCGCAGCGGCGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PRTDSQGLGSGR*SAGGCGRSGAG Trigger: CCCAGCGCCGCTGCGGCCGCAGCCTCCTGCCGAGCATCTTCCAGATCCCAATCCCTGAGAATCAGTTCTGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS GCA 72 bp | CGGGACGCTGGGGCAGGGCACACTGGCGGAGCTGCTTaGTCAGTAGGGAATGTCAGTTGTTGCGCTGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: RDAGAGHTGGAA*SVGNVSCCAGP Trigger: TGGCCCAGCGCAACAACTGACATTCCCTACTGAGCAAGCAGCTCCGCCAGTGTGCCCTGCCCCAGCGTCCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS GCA 72 bp | ACGGCGGGACGCTGGGGCAGGGCACACTGGCGGAGCTaGTTGCTCAGTAGGGAATGTCAGTTGTTGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: TAGRWGRAHWRS*LLSRECQLLRW Trigger: CCAGCGCAACAACTGACATTCCCTACTGAGCAAGCAGCTCCGCCAGTGTGCCCTGCCCCAGCGTCCCGCCGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CCA 72 bp | GAGCCCTGCTTTGTCCTCAGTAGAGTGCCGGTTCCCTaGGCTCATCCAGGGGCTGAGAGACGGCGGGACGCT | + |
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Preference number: 6 (lower is better) Translates to: EPCFVLSRVPVP*AHPGAERRRDA Trigger: AGCGTCCCGCCGTCTCTCAGCCCCTGGATGAGCCCAGGGAACCGGCACTCTACTGAGGACAAAGCAGGGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS TCA 72 bp | ACCGGGTCTGGCTGCCACGTAGTGTGGTGGCTGCAGTaGCCGAGGCTTGCTGGTCCCAGAATAATGTCCGCT | + |
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Preference number: 6 (lower is better) Translates to: TGSGCHVVWWLQ*PRLAGPRIMSA Trigger: AGCGGACATTATTCTGGGACCAGCAAGCCTCGGTCACTGCAGCCACCACACTACGTGGCAGCCAGACCCGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648864.1 ENST00000649569.1 |
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| CDS GCA 72 bp | CTGCCACGTAGTGTGGTGGCTGCAGTGACCGAGGCTTaGTGGTCCCAGAATAATGTCCGCTTGCTCTGTTAC | + |
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Preference number: 6 (lower is better) Translates to: LPRSVVAAVTEA*WSQNNVRLLCY Trigger: GTAACAGAGCAAGCGGACATTATTCTGGGACCAGCAAGCCTCGGTCACTGCAGCCACCACACTACGTGGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648864.1 ENST00000649569.1 |
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| CDS CAA 72 bp | CTTGCTCTGTTACATCCCAGAACTGATTCTCAGGGATaGGGATCTGGAAGATGCTCGGCAGGAGGCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: LALLHPRTDSQG*GSGRCSAGGCG Trigger: GCCGCAGCCTCCTGCCGAGCATCTTCCAGATCCCAATCCCTGAGAATCAGTTCTGGGATGTAACAGAGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CAA 72 bp | CACTGGCGGAGCTGCTTGCTCAGTAGGGAATGTCAGTaGTTGCGCTGGGCCATGAGAAATCCGCCAGAAAAC | + |
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Preference number: 6 (lower is better) Translates to: HWRSCLLSRECQ*LRWAMRNPPEN Trigger: GTTTTCTGGCGGATTTCTCATGGCCCAGCGCAACAACTGACATTCCCTACTGAGCAAGCAGCTCCGCCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CAA 72 bp | TGGCGGAGCTGCTTGCTCAGTAGGGAATGTCAGTTGTaGCGCTGGGCCATGAGAAATCCGCCAGAAAACGTT | + |
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Preference number: 6 (lower is better) Translates to: WRSCLLSRECQL*RWAMRNPPENV Trigger: AACGTTTTCTGGCGGATTTCTCATGGCCCAGCGCAACAACTGACATTCCCTACTGAGCAAGCAGCTCCGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CAA 90 bp | GTGGCTGCAGTGACCGAGGCTTGCTGGTCCCAGAATAATGTCCGCTaGCTCTGTTACATCCCAGAACTGATTCTCAGGGATTGGGATCTG | + |
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Preference number: 6 (lower is better) Translates to: VAAVTEACWSQNNVR*LCYIPELILRDWDL Trigger: CAGATCCCAATCCCTGAGAATCAGTTCTGGGATGTAACAGAGCAAGCGGACATTATTCTGGGACCAGCAAGCCTCGGTCACTGCAGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS TCA 72 bp | TGCTCAGTAGGGAATGTCAGTTGTTGCGCTGGGCCATaGGAAATCCGCCAGAAAACGTTAGGTGAGCAGACA | + |
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Preference number: 6 (lower is better) Translates to: CSVGNVSCCAGP*EIRQKTLGEQT Trigger: TGTCTGCTCACCTAACGTTTTCTGGCGGATTTCTCATGGCCCAGCGCAACAACTGACATTCCCTACTGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS TCA 72 bp | AGAATAATGTCCGCTTGCTCTGTTACATCCCAGAACTaGTTCTCAGGGATTGGGATCTGGAAGATGCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: RIMSACSVTSQN*FSGIGIWKMLG Trigger: GCCGAGCATCTTCCAGATCCCAATCCCTGAGAATCAGTTCTGGGATGTAACAGAGCAAGCGGACATTATTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CCA 72 bp | TTGCCTGTGAATCCCTTCCTTGTACATGGTGGTCAGTaGCACGGAATCCCCAATAGATTGTATATTTTGTCG | + |
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Preference number: 6 (lower is better) Translates to: LPVNPFLVHGGQ*HGIPNRLYILS Trigger: CGACAAAATATACAATCTATTGGGGATTCCGTGCCACTGACCACCATGTACAAGGAAGGGATTCACAGGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CAA 90 bp | TTTACAAACATTGAATTAGCTACCTTAAGTATTGAAGAGCTTCCATaGCTAGGTGAGCCCTGCTTTGTCCTCAGTAGAGTGCCGGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: FTNIELATLSIEELP*LGEPCFVLSRVPVP Trigger: GGGAACCGGCACTCTACTGAGGACAAAGCAGGGCTCACCTAGCAATGGAAGCTCTTCAATACTTAAGGTAGCTAATTCAATGTTTGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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| CDS CAA 72 bp | ATTGAATTAGCTACCTTAAGTATTGAAGAGCTTCCATaGCTAGGTGAGCCCTGCTTTGTCCTCAGTAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: IELATLSIEELP*LGEPCFVLSRV Trigger: CACTCTACTGAGGACAAAGCAGGGCTCACCTAGCAATGGAAGCTCTTCAATACTTAAGGTAGCTAATTCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648864.1 |
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