Pregenerated sensors for C8ORF88 (Homo sapiens)
Ensembl gene IDs: ENSG00000253250Ensembl transcript IDs: ENST00000517562.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCATTCTAAGCCTCTGGAGAGACTGTAATGATCCATTCATGAGCTaGTATGAAATCAGTGGGAAGCAGAACAACAGAAGGAACTTTAAA | + |
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Preference number: 1 (lower is better) Translates to: IILSLWRDCNDPFMS*YEISGKQNNRRNFK Trigger: TTTAAAGTTCCTTCTGTTGTTCTGCTTCCCACTGATTTCATACCAGCTCATGAATGGATCATTACAGTCTCTCCAGAGGCTTAGAATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| 3UTR CCA 72 bp | AGCCTCTGGAGAGACTGTAATGATCCATTCATGAGCTaGTATGAAATCAGTGGGAAGCAGAACAACAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: SLWRDCNDPFMS*YEISGKQNNRR Trigger: CCTTCTGTTGTTCTGCTTCCCACTGATTTCATACCAGCTCATGAATGGATCATTACAGTCTCTCCAGAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR GCA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCGTTGAAAGGGAACACTaGTCCTGGGGGAGAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LTKFLLSSVTSQFMQETSVEREH*SWGRSQ Trigger: CTGACTTCTCCCCCAGGAGCAGTGTTCCCTTTCAAC...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTGGGGGAGAAGTCAGATaGCGAACAGGTCTTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFGGEVR*RTGLAG Trigger: ACCAGCAAGACCTGTTCGTCATCTGACTTCTCCCCC...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTAGGGAACACTGCTCCTaGGGGAGAAGTCAGATGACG | + |
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Preference number: 4 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFREHCS*GRSQMT Trigger: CGTCATCTGACTTCTCCCCCAGGAGCAGTGTTCCCT...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCCCACTTTGTATGCACTaGGTGTTGCATGGATATTCG | + |
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Preference number: 4 (lower is better) Translates to: LTKFLLSSVTSQFMQETSPLCMH*VLHGYS Trigger: CGAATATCCATGCAACACTCAGTGCATACAAAGTGG...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR GCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATATGACGAACAGGTCTTaGTGGTTGAAGCGGTTTACC | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADMTNRS*WLKRFT Trigger: GGTAAACCGCTTCAACCAGCAAGACCTGTTCGTCAT...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | CAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCTGCAGTACAATGGGATaGTCAGGCAGAAAGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: QLLLLDPPHLQMSKLKFICSTMG*SGRKSG Trigger: ACCAGACTTTCTGCCTGATCATCCCATTGTACTGCA...GATGAATTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAGCAACAATAACTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR GCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATACTGGAGACTGCTGTTaGTGTTGCTCATTAAGACCT | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADTGDCC*CCSLRP Trigger: AGGTCTTAATGAGCAACAGCAACAGCAGTCTCCAGT...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATACGAACAGGTCTTGCTaGTTGAAGCGGTTTACCAAT | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADTNRSC*LKRFTN Trigger: ATTGGTAAACCGCTTCAACCAGCAAGACCTGTTCGT...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCTCTCTCTTTCTTAACTaGAGACTGCTGTTGCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: LTKFLLSSVTSQFMQETSSLFLN*RLLLLL Trigger: CAACAGCAACAGCAGTCTCCAGTTAAGAAAGAGAGA...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCGTTTTTGCAGTACAATaGGATGATCAGGCAGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: LTKFLLSSVTSQFMQETSVFAVQ*DDQAES Trigger: ACTTTCTGCCTGATCATCCCATTGTACTGCAAAAAC...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGATCCATTCATGAGCTaGTATGAAATCAGTGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADDPFMS*YEISGK Trigger: CTTCCCACTGATTTCATACCAGCTCATGAATGGATC...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATTTGTCACAAAGACTTTaGGGTTCCATACGACTCAAA | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADLSQRL*GSIRLK Trigger: TTTGAGTCGTATGGAACCTCAAAGTCTTTGTGACAA...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTACAGGTCTTGCTGGTTaGAGCGGTTTACCAATTAAT | + |
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Preference number: 4 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFTGLAG*SGLPIN Trigger: ATTAATTGGTAAACCGCTTCAACCAGCAAGACCTGT...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | TTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACTGCTCATTAAGACCTTaGGAAAAGGCTTGCATTCCA | + |
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Preference number: 4 (lower is better) Translates to: FTNQIPTFQCYFPIYAGNCSLRP*EKACIP Trigger: TGGAATGCAAGCCTTTTCTCAAGGTCTTAATGAGCA...GTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAGTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | TTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACATTCATGAGCTGGTATaGAATCAGTGGGAAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: FTNQIPTFQCYFPIYAGNIHELV*NQWEAE Trigger: TTCTGCTTCCCACTGATTTCATACCAGCTCATGAAT...GTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAGTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTAATGATCCATTCATaGGCTGGTATGAAATCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADVMIHS*AGMKSV Trigger: CACTGATTTCATACCAGCTCATGAATGGATCATTAC...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR GCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATTTCTTAACTGGAGACTaGTGTTGCTGTTGCTCATTA | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADFLTGD*CCCCSL Trigger: TAATGAGCAACAGCAACAGCAGTCTCCAGTTAAGAA...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCGCACTGAGTGTTGCATaGATATTCGTTTTGAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: LTKFLLSSVTSQFMQETSALSVA*IFVLKV Trigger: AACTTTCAAAACGAATATCCATGCAACACTCAGTGC...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR TCA 90 bp | CAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCCTGCCTCCTGTTTATTaGGAACTATGCATTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: QLLLLDPPHLQMSKLKFILPPVY*ELCIEH Trigger: ATGTTCAATGCATAGTTCTCAATAAACAGGAGGCAG...GATGAATTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAGCAACAATAACTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATACTTTGGTTGTTTTCTaGTTTTTGCAGTACAATGGG | + |
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Preference number: 4 (lower is better) Translates to: ELSQSITVIVARSTSFADTLVVF*FLQYNG Trigger: CCCATTGTACTGCAAAAACCAGAAAACAACCAAAGT...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CCA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTATCATTCTAAGCCTCTaGAGAGACTGTAATGATCCA | + |
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Preference number: 4 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFIILSL*RDCNDP Trigger: TGGATCATTACAGTCTCTCCAGAGGCTTAGAATGAT...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR GCA 90 bp | TTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACGTATGCACTGAGTGTTaGATGGATATTCGTTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: FTNQIPTFQCYFPIYAGNVCTEC*MDIRFE Trigger: TTCAAAACGAATATCCATGCAACACTCAGTGCATAC...GTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAGTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS CCA 90 bp | CGTCTTACATCTGCTAACTCCACTTTGTATGCACTGAGTGTTGCATaGATATTCGTTTTGAAAGTTGAAAGGGAACACTGCTCCTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: RLTSANSTLYALSVA*IFVLKVEREHCSWG Trigger: CCCCCAGGAGCAGTGTTCCCTTTCAACTTTCAAAACGAATATCCATGCAACACTCAGTGCATACAAAGTGGAGTTAGCAGATGTAAGACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCAACTGGAGACTGCTGTaGCTGTTGCTCATTAAGACC | + |
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Preference number: 5 (lower is better) Translates to: LTKFLLSSVTSQFMQETSNWRLL*LLLIKT Trigger: GGTCTTAATGAGCAACAGCAACAGCAGTCTCCAGTT...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCGATGACGAACAGGTCTaGCTGGTTGAAGCGGTTTAC | + |
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Preference number: 5 (lower is better) Translates to: QLLLLDPPHLQMSKLKFIDDEQV*LVEAVY Trigger: GTAAACCGCTTCAACCAGCAAGACCTGTTCGTCATC...GATGAATTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAGCAACAATAACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCTGCAGATGGAAACACTaGAGAGCTTCAACAGGAAAT | + |
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Preference number: 5 (lower is better) Translates to: LTKFLLSSVTSQFMQETSCRWKH*RASTGN Trigger: ATTTCCTGTTGAAGCTCTCAAGTGTTTCCATCTGCA...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACCTCCGCATGGATATTCGTTTaGAAAGTTGAAAGGGAACAC | + |
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Preference number: 5 (lower is better) Translates to: LTKFLLSSVTSQFMQETSAWIFV*KVEREH Trigger: GTGTTCCCTTTCAACTTTCAAAACGAATATCCATGC...GGAGGTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTTCTGCTAACTCCACTTaGTATGCACTGAGTGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFSANST*YALSVA Trigger: TGCAACACTCAGTGCATACAAAGTGGAGTTAGCAGA...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATACCTTGAGAAAAGGCTaGCATTCCATTCGTCTTACA | + |
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Preference number: 5 (lower is better) Translates to: ELSQSITVIVARSTSFADTLRKG*HSIRLT Trigger: TGTAAGACGAATGGAATGCAAGCCTTTTCTCAAGGT...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | GAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATTTGCTCATTAAGACCTaGAGAAAAGGCTTGCATTCC | + |
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Preference number: 5 (lower is better) Translates to: ELSQSITVIVARSTSFADLLIKT*RKGLHS Trigger: GGAATGCAAGCCTTTTCTCAAGGTCTTAATGAGCAA...ATCTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | TTCACTAACCAAATTCCTACTTTCCAGTGTTACTTCCCAATTTATGCAGGAAACAGACTGCTGTTGCTGTaGCTCATTAAGACCTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: FTNQIPTFQCYFPIYAGNRLLLL*LIKTLR Trigger: TCTCAAGGTCTTAATGAGCAACAGCAACAGCAGTCT...GTTTCCTGCATAAATTGGGAAGTAACACTGGAAAGTAGGAATTTGGTTAGTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | TTGAATTGTCACAGTCCATTACAGTTATTGTTGCTAGATCCACCTCATTTGCAGATTGTCACAAAGACTTaGAGGTTCCATACGACTCAA | + |
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Preference number: 5 (lower is better) Translates to: LNCHSPLQLLLLDPPHLQIVTKT*RFHTTQ Trigger: TTGAGTCGTATGGAACCTCAAAGTCTTTGTGACAAT...CTGCAAATGAGGTGGATCTAGCAACAATAACTGTAATGGACTGTGACAATTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTGTTGTTTTCTGGTTTTaGCAGTACAATGGGATGATC | + |
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Preference number: 5 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFVVFWF*QYNGMI Trigger: GATCATCCCATTGTACTGCAAAAACCAGAAAACAAC...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CCCAATTTATGCAGGAAACCTCCTGCAAAGCTGAAACTGATTAGAAAATTCTTTCTAGATCCACCTCATTaGCAGATGTCCAAACTTAAA | + |
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Preference number: 5 (lower is better) Translates to: PNLCRKPPAKLKLIRKFFLDPPH*QMSKLK Trigger: TTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAG...AAAGAATTTTCTAATCAGTTTCAGCTTTGCAGGAGGTTTCCTGCATAAATTGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCCCATTACAGTTATTGTaGCTAGATCCACCTCATTTG | + |
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Preference number: 5 (lower is better) Translates to: QLLLLDPPHLQMSKLKFIPLQLL*LDPPHL Trigger: CAAATGAGGTGGATCTAGCAACAATAACTGTAATGG...GATGAATTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAGCAACAATAACTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS-3UTR CAA 90 bp | CAGTTATTGTTGCTAGATCCACCTCATTTGCAGATGTCCAAACTTAAATTCATCAGTCCATTACAGTTATaGTTGCTAGATCCACCTCAT | + |
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Preference number: 5 (lower is better) Translates to: QLLLLDPPHLQMSKLKFISPLQL*LLDPPH Trigger: ATGAGGTGGATCTAGCAACAATAACTGTAATGGACT...GATGAATTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAGCAACAATAACTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS GCA 72 bp | CGCCGCGCTCAGCCCACACGCGGAGGCCGAGCGCCCTaGTGCCCGTCGGGGAACGGCTCCTGCCGCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RRAQPTRGGRAP*CPSGNGSCRWS Trigger: GGACCAGCGGCAGGAGCCGTTCCCCGACGGGCAGCAGGGCGCTCGGCCTCCGCGTGTGGGCTGAGCGCGGCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS GCA 72 bp | CGCGCTCAGCCCACACGCGGAGGCCGAGCGCCCTGCTaGCCGTCGGGGAACGGCTCCTGCCGCTGGTCCGCT | + |
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Preference number: 6 (lower is better) Translates to: RAQPTRGGRAPC*PSGNGSCRWSA Trigger: AGCGGACCAGCGGCAGGAGCCGTTCCCCGACGGGCAGCAGGGCGCTCGGCCTCCGCGTGTGGGCTGAGCGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS CAA 90 bp | GCTAACTCCACTTTGTATGCACTGAGTGTTGCATGGATATTCGTTTaGAAAGTTGAAAGGGAACACTGCTCCTGGGGGAGAAGTCAGATG | + |
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Preference number: 6 (lower is better) Translates to: ANSTLYALSVAWIFV*KVEREHCSWGRSQM Trigger: CATCTGACTTCTCCCCCAGGAGCAGTGTTCCCTTTCAACTTTCAAAACGAATATCCATGCAACACTCAGTGCATACAAAGTGGAGTTAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS TCA 72 bp | TGCACTGAGTGTTGCATGGATATTCGTTTTGAAAGTTaGAAGGGAACACTGCTCCTGGGGGAGAAGTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: CTECCMDIRFES*KGTLLLGEKSD Trigger: ATCTGACTTCTCCCCCAGGAGCAGTGTTCCCTTTCAACTTTCAAAACGAATATCCATGCAACACTCAGTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS CAA 72 bp | ACTTTGTATGCACTGAGTGTTGCATGGATATTCGTTTaGAAAGTTGAAAGGGAACACTGCTCCTGGGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: TLYALSVAWIFV*KVEREHCSWGR Trigger: TCTCCCCCAGGAGCAGTGTTCCCTTTCAACTTTCAAAACGAATATCCATGCAACACTCAGTGCATACAAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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| CDS CAA 72 bp | AATTCTCTCTTTCTTAACTGGAGACTGCTGTTGCTGTaGCTCATTAAGACCTTGAGAAAAGGCTTGCATTCC | + |
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Preference number: 6 (lower is better) Translates to: NSLFLNWRLLLL*LIKTLRKGLHS Trigger: GGAATGCAAGCCTTTTCTCAAGGTCTTAATGAGCAACAGCAACAGCAGTCTCCAGTTAAGAAAGAGAGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517562.3 |
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