Pregenerated sensors for C19ORF85 (Homo sapiens)
Ensembl gene IDs: ENSG00000283567Ensembl transcript IDs: ENST00000635964.1, ENST00000635964.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACCTGGGCCTAGGGAGTGGACAGGTTaGGGGCTCCTGGAGAGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: GVPSASFTAESSSPRPGPREWTG*GLLERA Trigger: AGCCCTCTCCAGGAGCCCCCAACCTGTCCACTCCCT...AGGCCCAGGTCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR TCA 90 bp | AGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACCTGCCTGAGGCAGTGGTCTaGAGTGGGGGTCTGGGTTGG | + |
|
Preference number: 2 (lower is better) Translates to: RQGSRLPRSQLNPQVLDLPEAVV*SGGLGW Trigger: CCAACCCAGACCCCCACTTCAGACCACTGCCTCAGG...CAGGTCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CCA 90 bp | TCCCTGAGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTATCGTGGAGGGGCCTCTaGCTTGTCCTGGGTTCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: SLRQGSRLPRSQLNPQVLSWRGL*LVLGSG Trigger: CCCAGAACCCAGGACAAGCCAGAGGCCCCTCCACGA...TAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCTCAGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CCA 90 bp | GGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACCTGGGCCTAGACCCCTGAGGCAGTaGTCTGAAGTGGGGGTCTGG | + |
|
Preference number: 2 (lower is better) Translates to: GVPSASFTAESSSPRPGPRPLRQ*SEVGVW Trigger: CCAGACCCCCACTTCAGACCACTGCCTCAGGGGTCT...AGGCCCAGGTCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACCTGGCCTCTGGCTTGTCCTaGGTTCTGGGCTGGGTTGTG | + |
|
Preference number: 2 (lower is better) Translates to: RQGSRLPRSQLNPQVLDLASGLS*VLGWVV Trigger: CACAACCCAGCCCAGAACCCAGGACAAGCCAGAGGC...CAGGTCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CCA 90 bp | CCTCAAGTCCTAGACCTGGGCCTGGCCCATAGTAGGCGCTCGATACATCTTTGGGCTGTAGAGCCGTCGTaGAGGGGCCTCTGGCTTGTC | + |
|
Preference number: 2 (lower is better) Translates to: PQVLDLGLAHSRRSIHLWAVEPS*RGLWLV Trigger: GACAAGCCAGAGGCCCCTCCACGACGGCTCTACAGC...CCAAAGATGTATCGAGCGCCTACTATGGGCCAGGCCCAGGTCTAGGACTTGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CCA 90 bp | CCTCAAGTCCTAGACCTGGGCCTGGCCCATAGTAGGCGCTCGATACATCTTTGGCTGCCAGGAAGGGAGTaGACAGGTTGGGGGCTCCTG | + |
|
Preference number: 2 (lower is better) Translates to: PQVLDLGLAHSRRSIHLWLPGRE*TGWGLL Trigger: CAGGAGCCCCCAACCTGTCCACTCCCTTCCTGGCAG...CCAAAGATGTATCGAGCGCCTACTATGGGCCAGGCCCAGGTCTAGGACTTGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR TCA 90 bp | TCCCTGAGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACATTAGGCAGAGGTaGGCCTGGGTGAGAGTGAGG | + |
|
Preference number: 2 (lower is better) Translates to: SLRQGSRLPRSQLNPQVLDIRQR*AWVRVR Trigger: CCTCACTCTCACCCAGGCTCACCTCTGCCTAATGTC...TAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCTCAGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACCTGTCTGAAGTGGGGGTCTaGGTTGGTTTATTTTCCCAG | + |
|
Preference number: 2 (lower is better) Translates to: RQGSRLPRSQLNPQVLDLSEVGV*VGLFSQ Trigger: CTGGGAAAATAAACCAACCCAGACCCCCACTTCAGA...CAGGTCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CAA 90 bp | CCTGAGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGAGGAGGGGCCTCTGGCTaGTCCTGGGTTCTGGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: PEAGVPSASFTAESSSPRGGASG*SWVLGW Trigger: CCAGCCCAGAACCCAGGACAAGCCAGAGGCCCCTCC...TCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCTCAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| 3UTR-3UTR CAA 90 bp | GAGGCAGGGGTCCCGTCTGCCTCGTTCACAGCTGAATCCTCAAGTCCTAGACCTGCGCTCGATACATCTTaGGGAATAAATGACAGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: EAGVPSASFTAESSSPRPALDTS*GINDRR Trigger: TCTCCTGTCATTTATTCCCAAAGATGTATCGAGCGC...AGGTCTAGGACTTGAGGATTCAGCTGTGAACGAGGCAGACGGGACCCCTGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635964.1 |
||
| CDS CCA 90 bp | TGCAGATCTGGTTGTGCAGAAACCTTCTGTGGTTGGGCCGCCTCTTaGGGGGCCGGGTGCGCCGGGGCTGCAGGGCCCGCAGCATGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: CRSGCAETFCGWAAS*GAGCAGAAGPAACG Trigger: CCCACATGCTGCGGGCCCTGCAGCCCCGGCGCACCCGGCCCCCCAAGAGGCGGCCCAACCACAGAAGGTTTCTGCACAACCAGATCTGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS CCA 90 bp | AGGGTAGAGGTGTCCAGGGCAGCGAGACTCAGGCTGGCGCTGGCATaGGGAGCCTCAGTGGGGGCCACAGCACAGGCCACTCCCAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RVEVSRAARLRLALA*GASVGATAQATPRK Trigger: CTTCCTGGGAGTGGCCTGTGCTGTGGCCCCCACTGAGGCTCCCCATGCCAGCGCCAGCCTGAGTCTCGCTGCCCTGGACACCTCTACCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS CCA 72 bp | GGCCGGGTGCGCCGGGGCTGCAGGGCCCGCAGCATGTaGGCGGCCGCCCCGCTCACAAAGGCACACAGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: GRVRRGCRARSM*AAAPLTKAHSS Trigger: GGAGCTGTGTGCCTTTGTGAGCGGGGCGGCCGCCCACATGCTGCGGGCCCTGCAGCCCCGGCGCACCCGGCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS CCA 72 bp | GGTTGTGCAGAAACCTTCTGTGGTTGGGCCGCCTCTTaGGGGGCCGGGTGCGCCGGGGCTGCAGGGCCCGCA | + |
|
Preference number: 6 (lower is better) Translates to: GCAETFCGWAAS*GAGCAGAAGPA Trigger: TGCGGGCCCTGCAGCCCCGGCGCACCCGGCCCCCCAAGAGGCGGCCCAACCACAGAAGGTTTCTGCACAACC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS CCA 72 bp | GTGTCCAGGGCAGCGAGACTCAGGCTGGCGCTGGCATaGGGAGCCTCAGTGGGGGCCACAGCACAGGCCACT | + |
|
Preference number: 6 (lower is better) Translates to: VSRAARLRLALA*GASVGATAQAT Trigger: AGTGGCCTGTGCTGTGGCCCCCACTGAGGCTCCCCATGCCAGCGCCAGCCTGAGTCTCGCTGCCCTGGACAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS CCA 72 bp | GGGACCTGCCTCAGGTCCAGCTGGCCCAGGTCGCGATaGGACAGACCCGGCGCTGGCAGGGGAGCATCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: GTCLRSSWPRSR*DRPGAGRGASE Trigger: TTCTGATGCTCCCCTGCCAGCGCCGGGTCTGTCCCATCGCGACCTGGGCCAGCTGGACCTGAGGCAGGTCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS GCA 72 bp | GCCTCAATCTTGGTGAACTGCCTGCAGATCTGGTTGTaGAGAAACCTTCTGTGGTTGGGCCGCCTCTTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: ASILVNCLQIWL*RNLLWLGRLLG Trigger: CCCCAAGAGGCGGCCCAACCACAGAAGGTTTCTGCACAACCAGATCTGCAGGCAGTTCACCAAGATTGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||
| CDS CAA 72 bp | CATGGCATTGAGGCACACTCTGGGGTGAGCGCAATGTaGTCAAAGAGGTCGAGGGTAGAGGTGTCCAGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: HGIEAHSGVSAM*SKRSRVEVSRA Trigger: TGCCCTGGACACCTCTACCCTCGACCTCTTTGACAACATTGCGCTCACCCCAGAGTGTGCCTCAATGCCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635964.2 |
||