RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C12ORF56 (Homo sapiens)

Ensembl gene IDs: ENSG00000185306

Ensembl transcript IDs: ENST00000333722.9, ENST00000535515.5, ENST00000536975.5, ENST00000541802.1, ENST00000542397.5, ENST00000543259.1, ENST00000543942.7

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAAATCATGTGGGAGAGAAACCCCAAGCCCTCACTAGAGCCTGCATaGCTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAG +
Preference number: 1 (lower is better)
Translates to: EIMWERNPKPSLEPA*LLAQIQGTAEKLRQ
Trigger: CTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGCTCTAGTGAGGGCTTGGGGTTTCTCTCCCACATGATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR GCA 90 bp TGCAGAAATCATGTGGGAGAGAAACCCCAAGCCCTCACTAGAGCCTaGATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAG +
Preference number: 1 (lower is better)
Translates to: CRNHVGEKPQALTRA*MTTSPDPGHCGEAK
Trigger: CTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGCTCTAGTGAGGGCTTGGGGTTTCTCTCCCACATGATTTCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR TCA 90 bp AGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCTGAGTTaGTCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCTTTG +
Preference number: 1 (lower is better)
Translates to: SPDPGHCGEAKAELS*SSRCHPAGSSVHSL
Trigger: CAAAGAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR TCA 90 bp CTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCTaGGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATT +
Preference number: 1 (lower is better)
Translates to: LLAQIQGTAEKLRQS*VDPLVVILRVHQYI
Trigger: AATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR CCA 90 bp TCTGTAGCTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTaGCTTCACACCACTCACCATTATTACACCAGTGAAACTCACCAG +
Preference number: 1 (lower is better)
Translates to: SVAYTPHNSLSQDVS*LHTTHHYYTSETHQ
Trigger: CTGGTGAGTTTCACTGGTGTAATAATGGTGAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAGCTACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR GCA 90 bp ATCTTTCATAGAGACTCTATGGGACTACACAAATTAGCCCACAGATaGCTGAAACAGAGTGGCACCATGCACTTAATTTTGTTGAAGTCC +
Preference number: 1 (lower is better)
Translates to: IFHRDSMGLHKLAHR*LKQSGTMHLILLKS
Trigger: GGACTTCAACAAAATTAAGTGCATGGTGCCACTCTGTTTCAGGCATCTGTGGGCTAATTTGTGTAGTCCCATAGAGTCTCTATGAAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCTCTCGTTGTCATCCTaGGGGTTCATCAGTACATTC +
Preference number: 2 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAELSLSS*GFISTF
Trigger: GAATGTACTGATGAACCCGCAGGATGACAACGAGAG...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGGTTTTTAAATGGTTGTaGGAGAGCCATAACTGCTCG +
Preference number: 2 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEVFKWL*ESHNCS
Trigger: CGAGCAGTTATGGCTCTCCCACAACCATTTAAAAAC...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCGAACTTGAATGCCCATaGCTCAGGCCCCCACACTCC +
Preference number: 2 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLELECP*LRPPHS
Trigger: GGAGTGTGGGGGCCTGAGGCATGGGCATTCAAGTTC...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGATGTGGACTCCTCATTaGGTAATGAAGGAAAAGACT +
Preference number: 2 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEMWTPH*VMKEKT
Trigger: AGTCTTTTCCTTCATTACCCAATGAGGAGTCCACAT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCGCTATGCCTGTGTTCTaGTCATTCTTCCAGGAATAC +
Preference number: 2 (lower is better)
Translates to: GRAELILSLSSCGFISTFAMPVF*SFFQEY
Trigger: GTATTCCTGGAAGAATGAGCAGAACACAGGCATAGC...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGTCTGGCCTCCGGCCTTaGTGGTTTCTGGTGCAGGAA +
Preference number: 2 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQSGLRP*WFLVQE
Trigger: TTCCTGCACCAGAAACCACCAAGGCCGGAGGCCAGA...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCTCTGGCCTCCGGCCTTaGTGGTTTCTGGTGCAGGAA +
Preference number: 2 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVSGLRP*WFLVQE
Trigger: TTCCTGCACCAGAAACCACCAAGGCCGGAGGCCAGA...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCATTCTATACAGCTATaGCTGTGTTCTGCTCATTCT +
Preference number: 2 (lower is better)
Translates to: GRAELILSLSSCGFISTFHSIQL*LCSAHS
Trigger: AGAATGAGCAGAACACAGGCATAGCTGTATAGAATG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTGGCGGATGAGATCTTaGGTGAGTGACCTTAGGCCC +
Preference number: 2 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMWRMRS*VSDLRP
Trigger: GGGCCTAAGGTCACTCACTCAAGATCTCATCCGCCA...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGAAATTAGCCCACAGATaGCTGAAACAGAGTGGCACC +
Preference number: 2 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVKLAHR*LKQSGT
Trigger: GGTGCCACTCTGTTTCAGGCATCTGTGGGCTAATTT...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGTCTCAGGATGTTTCGTaGCTTCACACCACTCACCAT +
Preference number: 2 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVSQDVS*LHTTHH
Trigger: ATGGTGAGTGGTGTGAAGCCACGAAACATCCTGAGA...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTGAACTTGAATGCCCATaGCTCAGGCCCCCACACTCC +
Preference number: 2 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTELECP*LRPPHS
Trigger: GGAGTGTGGGGGCCTGAGGCATGGGCATTCAAGTTC...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR TCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTTGGCGGATGAGATCTTaGGTGAGTGACCTTAGGCCC +
Preference number: 2 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTWRMRS*VSDLRP
Trigger: GGGCCTAAGGTCACTCACTCAAGATCTCATCCGCCA...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGTCCCCGGCATCCTATTaGTTAAGCAACAGAACTATT +
Preference number: 2 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVSPASY*LSNRTI
Trigger: AATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGA...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGTCCCCGGCATCCTATTaGTTAAGCAACAGAACTATT +
Preference number: 2 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQSPASY*LSNRTI
Trigger: AATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGA...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACCGAAATAATGGTTTTTaGATGGCTCTGAGTACAGAA +
Preference number: 2 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHRNNGF*MALSTE
Trigger: TTCTGTACTCAGAGCCATCCAAAAACCATTATTTCG...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGATGCCTGAAACAGAGTaGCACCATGCACTTAATTTT +
Preference number: 2 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVMPETE*HHALNF
Trigger: AAAATTAAGTGCATGGTGCCACTCTGTTTCAGGCAT...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR TCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGTTATCAGGAGAATTTTaGGAACCTTCTTGCTTTTGC +
Preference number: 2 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQLSGEF*EPSCFC
Trigger: GCAAAAGCAAGAAGGTTCTCAAAATTCTCCTGATAA...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTAAATTAGCCCACAGATaGCTGAAACAGAGTGGCACC +
Preference number: 2 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTKLAHR*LKQSGT
Trigger: GGTGCCACTCTGTTTCAGGCATCTGTGGGCTAATTT...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR GCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTAGTAATTATCTCCACTaGCCAACACAGGCGAATCTG +
Preference number: 2 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTSNYLH*PTQANL
Trigger: CAGATTCGCCTGTGTTGGGCAGTGGAGATAATTACT...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR TCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTTTATCAGGAGAATTTTaGGAACCTTCTTGCTTTTGC +
Preference number: 2 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCLSGEF*EPSCFC
Trigger: GCAAAAGCAAGAAGGTTCTCAAAATTCTCCTGATAA...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTCAACACAGGCGAATCTaGCTTAGGAACTCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTQHRRI*LRNSFF
Trigger: AAAGAAAGAGTTCCTAAGCCAGATTCGCCTGTGTTG...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTCGAAATAATGGTTTTTaGATGGCTCTGAGTACAGAA +
Preference number: 2 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTRNNGF*MALSTE
Trigger: TTCTGTACTCAGAGCCATCCAAAAACCATTATTTCG...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR GCA 72 bp CATGTGGGAGAGAAACCCCAAGCCCTCACTAGAGCCTaGATGACTACTAGCCCAGATCCAGGGCACTGCGGA +
Preference number: 3 (lower is better)
Translates to: HVGEKPQALTRA*MTTSPDPGHCG
Trigger: TCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGCTCTAGTGAGGGCTTGGGGTTTCTCTCCCACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCTCTGGCCTCCGGCCTaGGTGGTTTCTGGTGCAGGA +
Preference number: 3 (lower is better)
Translates to: GRAELILSLSSCGFISTFLWPPA*VVSGAG
Trigger: TCCTGCACCAGAAACCACCAAGGCCGGAGGCCAGAG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR TCA 72 bp CAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCTaGGTTGATCCTCTCGTTGTCATCCTGCGGGTTCAT +
Preference number: 3 (lower is better)
Translates to: QIQGTAEKLRQS*VDPLVVILRVH
Trigger: ATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR CCA 72 bp CTAGCAGAGGAAGCCCAGGAAGAAACAGATGTGGCCTaGAAAGGGGGCCTGACTTGCTTGAAGTCAAATAGC +
Preference number: 3 (lower is better)
Translates to: LAEEAQEETDVA*KGGLTCLKSNS
Trigger: GCTATTTGACTTCAAGCAAGTCAGGCCCCCTTTCCAGGCCACATCTGTTTCTTCCTGGGCTTCCTCTGCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGCTCTGGCCTCCGGCCTaGGTGGTTTCTGGTGCAGGA +
Preference number: 3 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAELWPPA*VVSGAG
Trigger: TCCTGCACCAGAAACCACCAAGGCCGGAGGCCAGAG...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGAATGAAGGAAAAGACTaGGACACTTTATGGGGTGAT +
Preference number: 3 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAENEGKD*DTLWGD
Trigger: ATCACCCCATAAAGTGTCCAAGTCTTTTCCTTCATT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGTTGATTGACCGTCTCTaGAAAATAATCCCCCATCTA +
Preference number: 3 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAELIDRL*KIIPHL
Trigger: TAGATGGGGGATTATTTTCAAGAGACGGTCAATCAA...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR GCA 72 bp GAAGAAACAGATGTGGCCTGGAAAGGGGGCCTGACTTaGTTGAAGTCAAATAGCTGGTCATTTGGCTCTGTC +
Preference number: 3 (lower is better)
Translates to: EETDVAWKGGLT*LKSNSWSFGSV
Trigger: GACAGAGCCAAATGACCAGCTATTTGACTTCAAGCAAGTCAGGCCCCCTTTCCAGGCCACATCTGTTTCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCAAGTTTTTAAATGGTaGTGGGAGAGCCATAACTGC +
Preference number: 3 (lower is better)
Translates to: GRAELILSLSSCGFISTFQVFKW*WESHNC
Trigger: GCAGTTATGGCTCTCCCACAACCATTTAAAAACTTG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGCTCCCCGGCATCCTATaGCTTAAGCAACAGAACTAT +
Preference number: 3 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVLPGIL*LKQQNY
Trigger: ATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGAG...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR CCA 72 bp TGGAAAGGGGGCCTGACTTGCTTGAAGTCAAATAGCTaGTCATTTGGCTCTGTCAGAACCTGGAATAAAATG +
Preference number: 3 (lower is better)
Translates to: WKGGLTCLKSNS*SFGSVRTWNKM
Trigger: CATTTTATTCCAGGTTCTGACAGAGCCAAATGACCAGCTATTTGACTTCAAGCAAGTCAGGCCCCCTTTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGAGAACCTTCTTGCTTTaGCTGCTAAGGTGGAAGAGA +
Preference number: 3 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVRTFLL*LLRWKR
Trigger: TCTCTTCCACCTTAGCAGCAAAAGCAAGAAGGTTCT...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR GCA 72 bp AGAGACTCTATGGGACTACACAAATTAGCCCACAGATaGCTGAAACAGAGTGGCACCATGCACTTAATTTTG +
Preference number: 3 (lower is better)
Translates to: RDSMGLHKLAHR*LKQSGTMHLIL
Trigger: CAAAATTAAGTGCATGGTGCCACTCTGTTTCAGGCATCTGTGGGCTAATTTGTGTAGTCCCATAGAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCCTCCCCGGCATCCTATaGCTTAAGCAACAGAACTAT +
Preference number: 3 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVLPGIL*LKQQNY
Trigger: ATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGAG...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR CCA 72 bp TATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTaGCTTCACACCACTCACCATTATTACACCAGTGAA +
Preference number: 3 (lower is better)
Translates to: YTPHNSLSQDVS*LHTTHHYYTSE
Trigger: TTCACTGGTGTAATAATGGTGAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR-3UTR CAA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGACCATGCACTTAATTTaGTTGAAGTCCAAGCTTCTT +
Preference number: 3 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQTMHLI*LKSKLL
Trigger: AAGAAGCTTGGACTTCAACAAAATTAAGTGCATGGT...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR TCA 72 bp TTCGTGGCTTCACACCACTCACCATTATTACACCAGTaGAACTCACCAGATTATATTTTCTGTGTTCACTCT +
Preference number: 3 (lower is better)
Translates to: FVASHHSPLLHQ*NSPDYIFCVHS
Trigger: AGAGTGAACACAGAAAATATAATCTGGTGAGTTTCACTGGTGTAATAATGGTGAGTGGTGTGAAGCCACGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCCAGGCGGCTGTTCCTaGGCGCGGGGAAGCCGGACG +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFPGGCS*ARGSRT
Trigger: CGTCCGGCTTCCCCGCGCGCAGGAACAGCCGCCTGG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCCCGCCGGATGGACTTaGGCGGGTTCTCGGTTAGGT +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEPAGWT*AGSRLG
Trigger: ACCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGG...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACCCAGGCGGCTGTTCCTaGGCGCGGGGAAGCCGGACG +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHPGGCS*ARGSRT
Trigger: CGTCCGGCTTCCCCGCGCGCAGGAACAGCCGCCTGG...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCCACTACCCGCCGGATaGACTTGGGCGGGTTCTCGG +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFPLPAG*TWAGSR
Trigger: CCGAGAACCCGCCCAAGTCCATCCGGCGGGTAGTGG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGTCACTTATGGAGTTGTaGTCTGGAAGTCCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAESLMEL*SGSPWG
Trigger: ACCCCAGGGACTTCCAGATCACAACTCCATAAGTGA...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGTCCCCGCCCCCGCGCTaGAACCCGCGCGCCACAAAG +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAESPPPR*NPRATK
Trigger: CTTTGTGGCGCGCGGGTTCCAGCGCGGGGGCGGGGA...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGTGTGGTTCTCAGAGTTaGACACCACGATGCATGGCT +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAECGSQS*TPRCMA
Trigger: AGCCATGCATCGTGGTGTCCAACTCTGAGAACCACA...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCGCTAGAGTCCTGCTGTaGCGCAGACAGCTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFARVLL*RRQLLR
Trigger: CCTCAAGAGCTGTCTGCGGCACAGCAGGACTCTAGC...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGAAATTAGCCCACAGATaGCTGAAACAGAGTGGCACC +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEKLAHR*LKQSGT
Trigger: GGTGCCACTCTGTTTCAGGCATCTGTGGGCTAATTT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCTCTGGCCTCCGGCCTTaGTGGTTTCTGGTGCAGGAA +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFSGLRP*WFLVQE
Trigger: TTCCTGCACCAGAAACCACCAAGGCCGGAGGCCAGA...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGTACGAATGTGTTGGCTaGTTTCTCTATCTGGCGAAC +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEYECVG*FLYLAN
Trigger: GTTCGCCAGATAGAGAAATCAGCCAACACATTCGTA...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGCGCAGCGTGGCGGAGTaGTGGGACTCGAGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQRSVAE*WDSRPS
Trigger: TGAGGGCCTCGAGTCCCAGCACTCCGCCACGCTGCG...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGAGCGTGGCGGAGTGCTaGGACTCGAGGCCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVSVAEC*DSRPSA
Trigger: AGCTGAGGGCCTCGAGTCCCAGCACTCCGCCACGCT...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCCCCGCCGGATGGACTTaGGCGGGTTCTCGGTTAGGT +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLPAGWT*AGSRLG
Trigger: ACCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGG...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCCGCAGCGTGGCGGAGTaGTGGGACTCGAGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVRSVAE*WDSRPS
Trigger: TGAGGGCCTCGAGTCCCAGCACTCCGCCACGCTGCG...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGACCTCGGGCGGCAGATaGCGCCGCAGGAACACATCC +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAETSGGR*RRRNTS
Trigger: GGATGTGTTCCTGCGGCGGCATCTGCCGCCCGAGGT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGGAATCAGCCACCAACTaGATATCAAACACAGGACAA +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEESATN*ISNTGQ
Trigger: TTGTCCTGTGTTTGATATCCAGTTGGTGGCTGATTC...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCCTTTTCTGCAAGGCTaGCATGTGAATAAAGTACCT +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEPFLQG*HVNKVP
Trigger: AGGTACTTTATTCACATGCCAGCCTTGCAGAAAAGG...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGAAAGCCTTTTCAGAATaGAGTTTTTCTGGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEKAFSE*SFSGLL
Trigger: TAGCAGCCCAGAAAAACTTCATTCTGAAAAGGCTTT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCAGGGACTTAGCAGCTaGAATGAAGCTGAAAGACCC +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFQGLSS*NEAERP
Trigger: GGGTCTTTCAGCTTCATTTCAGCTGCTAAGTCCCTG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCGCCGCAGACAGCTCTTaGGGATGTAAAATTGCTGGT +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFAADSS*GCKIAG
Trigger: ACCAGCAATTTTACATCCTCAAGAGCTGTCTGCGGC...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCAAGGCAGAGCTGAGTTaGTCCTCTCGTTGTCATCCT +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFKAELS*SSRCHP
Trigger: AGGATGACAACGAGAGGATCAACTCAGCTCTGCCTT...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCGAATTATTAGTTTCTaGTCCCAGACTGTGCAAATG +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAERIISF*SQTVQM
Trigger: CATTTGCACAGTCTGGGATCAGAAACTAATAATTCG...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTTCCCCGCCCCCGCGCTaGAACCCGCGCGCCACAAAG +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTSPPPR*NPRATK
Trigger: CTTTGTGGCGCGCGGGTTCCAGCGCGGGGGCGGGGA...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCGGACACCACGATGCATaGCTCGTAGGCGCGGACCGC +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVGHHDA*LVGADR
Trigger: GCGGTCCGCGCCTACGAGCCATGCATCGTGGTGTCC...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGCTAGGTCGGCTTCCCTaGAGCGCCCTCCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMLGRLP*SALPSP
Trigger: AGGGCTGGGGAGGGCGCTCCAGGGAAGCCGACCTAG...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR TCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGTTATCAGGAGAATTTTaGGAACCTTCTTGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAELSGEF*EPSCFC
Trigger: GCAAAAGCAAGAAGGTTCTCAAAATTCTCCTGATAA...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGGAAGTTTTTCTGGGCTaGTACTTTAAGTTCCATAAG +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEEVFLG*YFKFHK
Trigger: CTTATGGAACTTAAAGTAGCAGCCCAGAAAAACTTC...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCAAATTAGCCCACAGATaGCTGAAACAGAGTGGCACC +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFKLAHR*LKQSGT
Trigger: GGTGCCACTCTGTTTCAGGCATCTGTGGGCTAATTT...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACGGTGTACTGCTCTCCTaGTGGTCCCTGAGAGGAGAT +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHGVLLS*WSLRGD
Trigger: ATCTCCTCTCAGGGACCAGCAGGAGAGCAGTACACC...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTCCACTACCCGCCGGATaGACTTGGGCGGGTTCTCGG +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCPLPAG*TWAGSR
Trigger: CCGAGAACCCGCCCAAGTCCATCCGGCGGGTAGTGG...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGAGAATGAAGTTTTTCTaGGCTGCTACTTTAAGTTCC +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAERMKFF*AATLSS
Trigger: GGAACTTAAAGTAGCAGCCCAGAAAAACTTCATTCT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGCGAAATAATGGTTTTTaGATGGCTCTGAGTACAGAA +
Preference number: 4 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAERNNGF*MALSTE
Trigger: TTCTGTACTCAGAGCCATCCAAAAACCATTATTTCG...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCTCTCAGGATGTTTCGTaGCTTCACACCACTCACCAT +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFSQDVS*LHTTHH
Trigger: ATGGTGAGTGGTGTGAAGCCACGAAACATCCTGAGA...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
3UTR CAA 72 bp GAAACAGATGTGGCCTGGAAAGGGGGCCTGACTTGCTaGAAGTCAAATAGCTGGTCATTTGGCTCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: ETDVAWKGGLTC*KSNSWSFGSVR
Trigger: TCTGACAGAGCCAAATGACCAGCTATTTGACTTCAAGCAAGTCAGGCCCCCTTTCCAGGCCACATCTGTTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAACTTGAATGCCCATaGCTCAGGCCCCCACACTCC +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQELECP*LRPPHS
Trigger: GGAGTGTGGGGGCCTGAGGCATGGGCATTCAAGTTC...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGGAACTTGAATGCCCATaGCTCAGGCCCCCACACTCC +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEELECP*LRPPHS
Trigger: GGAGTGTGGGGGCCTGAGGCATGGGCATTCAAGTTC...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGTCTGGCCTCCGGCCTTaGTGGTTTCTGGTGCAGGAA +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAESGLRP*WFLVQE
Trigger: TTCCTGCACCAGAAACCACCAAGGCCGGAGGCCAGA...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACGCCGCAGACAGCTCTTaGGGATGTAAAATTGCTGGT +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHAADSS*GCKIAG
Trigger: ACCAGCAATTTTACATCCTCAAGAGCTGTCTGCGGC...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGTGGCGGATGAGATCTTaGGTGAGTGACCTTAGGCCC +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQWRMRS*VSDLRP
Trigger: GGGCCTAAGGTCACTCACTCAAGATCTCATCCGCCA...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACACGAGGACAGAGAGTTaGGTCCTTGGATGGTGTACT +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHTRTES*VLGWCT
Trigger: AGTACACCATCCAAGGACTCAACTCTCTGTCCTCGT...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTAGCGTGGCGGAGTGCTaGGACTCGAGGCCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTSVAEC*DSRPSA
Trigger: AGCTGAGGGCCTCGAGTCCCAGCACTCCGCCACGCT...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGCATCAATCAGGTCAATaGCCACGACGTCCCGCAGAG +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQHQSGQ*PRRPAE
Trigger: CTCTGCGGGACGTCGTGGCCATTGACCTGATTGATG...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCGAATCAGCCACCAACTaGATATCAAACACAGGACAA +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFESATN*ISNTGQ
Trigger: TTGTCCTGTGTTTGATATCCAGTTGGTGGCTGATTC...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCTCCTCAGACCTATATaGCTTTTGACTTCCAATAGC +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFLLRPI*LLTSNS
Trigger: GCTATTGGAAGTCAAAAGCCATATAGGTCTGAGGAG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTACTGAGAGCTCCTCCTaGAGGGGGAAGGTAGGGGTC +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCTESSS*RGKVGV
Trigger: GACCCCTACCTTCCCCCTCCAGGAGGAGCTCTCAGT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR TCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACCCGAGATTTCCCTGCTaGAAGACCAGAAGTATCTCA +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHPRFPC*KTRSIS
Trigger: TGAGATACTTCTGGTCTTTCAGCAGGGAAATCTCGG...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCTGGCGGATGAGATCTTaGGTGAGTGACCTTAGGCCC +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVWRMRS*VSDLRP
Trigger: GGGCCTAAGGTCACTCACTCAAGATCTCATCCGCCA...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGTGGGGTGATGGCTGGTaGCAGCTGAAAGGGAAACTT +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQWGDGW*QLKGKL
Trigger: AAGTTTCCCTTTCAGCTGTCACCAGCCATCACCCCA...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGAAGGCACCTTGGCCATaGAGGGACAGCTTTTTGAGG +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQKAPWP*RDSFLR
Trigger: CCTCAAAAAGCTGTCCCTTCATGGCCAAGGTGCCTT...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR GCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGAGTTGGACACCACGATaGATGGCTCGTAGGCGCGGA +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMSWTPR*MARRRG
Trigger: TCCGCGCCTACGAGCCATGCATCGTGGTGTCCAACT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTGCTAGAGTCCTGCTGTaGCGCAGACAGCTCTTGAGG +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCARVLL*RRQLLR
Trigger: CCTCAAGAGCTGTCTGCGGCACAGCAGGACTCTAGC...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCACTCAGCTAGAGTCCTaGTGTGCCGCAGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVTQLES*CAADSS
Trigger: AGAGCTGTCTGCGGCACAGCAGGACTCTAGCTGAGT...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCCTCTCGTTGTCATCCTaGGGGTTCATCAGTACATTC +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLLSLSS*GFISTF
Trigger: GAATGTACTGATGAACCCGCAGGATGACAACGAGAG...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCATGATACGAATGTGTTaGCTGATTTCTCTATCTGGC +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFMIRMC*LISLSG
Trigger: GCCAGATAGAGAAATCAGCCAACACATTCGTATCAT...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCTCTCAGGATGTTTCGTaGCTTCACACCACTCACCAT +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLSQDVS*LHTTHH
Trigger: ATGGTGAGTGGTGTGAAGCCACGAAACATCCTGAGA...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGGTTTGTTGTGCAAGATaGCTCGCTGACAGCCTTGCC +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQVCCAR*LADSLA
Trigger: GGCAAGGCTGTCAGCGAGCCATCTTGCACAACAAAC...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR TCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACTGCAAAATCATCCACTaGGCCGAGATAGCAGAGAAA +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHCKIIH*AEIAEK
Trigger: TTTCTCTGCTATCTCGGCTCAGTGGATGATTTTGCA...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCTGGGGTGATGGCTGGTaGCAGCTGAAAGGGAAACTT +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVWGDGW*QLKGKL
Trigger: AAGTTTCCCTTTCAGCTGTCACCAGCCATCACCCCA...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGAAGCTAAGGCAGAGCTaGGTTGATCCTCTCGTTGTC +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEKLRQS*VDPLVV
Trigger: GACAACGAGAGGATCAACTCAGCTCTGCCTTAGCTT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTGAAGGGACAGCTTTTTaGGGCCTGGACGAGGACAGA +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCEGTAF*GLDEDR
Trigger: TCTGTCCTCGTCCAGGCCTCAAAAAGCTGTCCCTTC...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTGCAAGATGGCTCGCTaGCAGCCTTGCCAGTTGTTG +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMCKMAR*QPCQLL
Trigger: CAACAACTGGCAAGGCTGTCAGCGAGCCATCTTGCA...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR GCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTACTCAGCTAGAGTCCTaGTGTGCCGCAGACAGCTCT +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCTQLES*CAADSS
Trigger: AGAGCTGTCTGCGGCACAGCAGGACTCTAGCTGAGT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCGCTATGCCTGTGTTCTaGTCATTCTTCCAGGAATAC +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLAMPVF*SFFQEY
Trigger: GTATTCCTGGAAGAATGAGCAGAACACAGGCATAGC...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCAGTAATTATCTCCACTaGCCAACACAGGCGAATCTG +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLSNYLH*PTQANL
Trigger: CAGATTCGCCTGTGTTGGGCAGTGGAGATAATTACT...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCGCCCTCACTAGAGCCTaGATGACTACTAGCCCAGAT +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVALTRA*MTTSPD
Trigger: ATCTGGGCTAGTAGTCATGCAGGCTCTAGTGAGGGC...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGTGTGGTTCTCAGAGTTaGACACCACGATGCATGGCT +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQCGSQS*TPRCMA
Trigger: AGCCATGCATCGTGGTGTCCAACTCTGAGAACCACA...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTCATCAATCAGGTCAATaGCCACGACGTCCCGCAGAG +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCHQSGQ*PRRPAE
Trigger: CTCTGCGGGACGTCGTGGCCATTGACCTGATTGATG...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCAGAATGAAGTTTTTCTaGGCTGCTACTTTAAGTTCC +
Preference number: 4 (lower is better)
Translates to: GRAELILSLSSCGFISTFRMKFF*AATLSS
Trigger: GGAACTTAAAGTAGCAGCCCAGAAAAACTTCATTCT...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGTTAGCACCACATACTTaGGGATGTGGTTCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVLAPHT*GCGSQS
Trigger: ACTCTGAGAACCACATCCTCAAGTATGTGGTGCTAA...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCCGAGATTTCCCTGCTaGAAGACCAGAAGTATCTCA +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQPRFPC*KTRSIS
Trigger: TGAGATACTTCTGGTCTTTCAGCAGGGAAATCTCGG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCAAGCTAAGGCAGAGCTaGGTTGATCCTCTCGTTGTC +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVKLRQS*VDPLVV
Trigger: GACAACGAGAGGATCAACTCAGCTCTGCCTTAGCTT...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCTCCCCGGCATCCTATTaGTTAAGCAACAGAACTATT +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLSPASY*LSNRTI
Trigger: AATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGA...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTGCCCTCACTAGAGCCTaGATGACTACTAGCCCAGAT +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCALTRA*MTTSPD
Trigger: ATCTGGGCTAGTAGTCATGCAGGCTCTAGTGAGGGC...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGACATACTTGAGGATGTaGTTCTCAGAGTTGGACACC +
Preference number: 4 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVTYLRM*FSELDT
Trigger: GGTGTCCAACTCTGAGAACCACATCCTCAAGTATGT...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACGTTTTTAAATGGTTGTaGGAGAGCCATAACTGCTCG +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHVFKWL*ESHNCS
Trigger: CGAGCAGTTATGGCTCTCCCACAACCATTTAAAAAC...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACCAACACAGGCGAATCTaGCTTAGGAACTCTTTCTTT +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHQHRRI*LRNSFF
Trigger: AAAGAAAGAGTTCCTAAGCCAGATTCGCCTGTGTTG...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGAGAGAGTTGAGTCCTTaGATGGTGTACTGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAERELSP*MVYCSP
Trigger: AGGAGAGCAGTACACCATCCAAGGACTCAACTCTCT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR TCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCAAAGCCTTTTCAGAATaGAGTTTTTCTGGGCTGCTA +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLKAFSE*SFSGLL
Trigger: TAGCAGCCCAGAAAAACTTCATTCTGAAAAGGCTTT...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGTGCAAGGCTGGCATGTaGATAAAGTACCTGAATTCT +
Preference number: 4 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVCKAGM*IKYLNS
Trigger: AGAATTCAGGTACTTTATTCACATGCCAGCCTTGCA...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGAAGGCAGAGCTGAGTTaGTCCTCTCGTTGTCATCCT +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMKAELS*SSRCHP
Trigger: AGGATGACAACGAGAGGATCAACTCAGCTCTGCCTT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGAGTAATTATCTCCACTaGCCAACACAGGCGAATCTG +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAESNYLH*PTQANL
Trigger: CAGATTCGCCTGTGTTGGGCAGTGGAGATAATTACT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCCACAGGACAAGATTTTaGAATCTGAGGCTCACTAAT +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLHRTRF*NLRLTN
Trigger: ATTAGTGAGCCTCAGATTCCAAAATCTTGTCCTGTG...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGCCTTTTCTGCAAGGCTaGCATGTGAATAAAGTACCT +
Preference number: 4 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVPFLQG*HVNKVP
Trigger: AGGTACTTTATTCACATGCCAGCCTTGCAGAAAAGG...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCATGCCTGAAACAGAGTaGCACCATGCACTTAATTTT +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLMPETE*HHALNF
Trigger: AAAATTAAGTGCATGGTGCCACTCTGTTTCAGGCAT...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACATGAAGGAAAAGACTTaGACACTTTATGGGGTGATG +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHMKEKT*TLYGVM
Trigger: CATCACCCCATAAAGTGTCCAAGTCTTTTCCTTCAT...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACGATTCAGATATATTTTaGCAGAGATTTTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHDSDIF*QRFCSQ
Trigger: CTGGGAGCAAAATCTCTGTCAAAATATATCTGAATC...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCGAAGTTTTTCTGGGCTaGTACTTTAAGTTCCATAAG +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLEVFLG*YFKFHK
Trigger: CTTATGGAACTTAAAGTAGCAGCCCAGAAAAACTTC...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCACATACTTGAGGATGTaGTTCTCAGAGTTGGACACC +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVTYLRM*FSELDT
Trigger: GGTGTCCAACTCTGAGAACCACATCCTCAAGTATGT...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCAATAGAAAAGGTCACTaGTCTTCCAGAAAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLNRKGH*SSRKAF
Trigger: AAAGGCTTTTCTGGAAGACCAGTGACCTTTTCTATT...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCAGACAAGTTTTTAAATaGTTGTGGGAGAGCCATAAC +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLRQVFK*LWESHN
Trigger: GTTATGGCTCTCCCACAACCATTTAAAAACTTGTCT...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCAACACAGGCGAATCTaGCTTAGGAACTCTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQQHRRI*LRNSFF
Trigger: AAAGAAAGAGTTCCTAAGCCAGATTCGCCTGTGTTG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTGTACTGCTCTCCTGCTaGTCCCTGAGAGGAGATTCT +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTVLLSC*SLRGDS
Trigger: AGAATCTCCTCTCAGGGACCAGCAGGAGAGCAGTAC...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CCA 90 bp CTTATACTCCCCACAACAGTTTATCTCAGGATGTTTCGTGGCTTCACACCACTCAAGGAATTTCACTTATaGAGTTGTGATCTGGAAGTC +
Preference number: 4 (lower is better)
Translates to: LILPTTVYLRMFRGFTPLKEFHL*SCDLEV
Trigger: GACTTCCAGATCACAACTCCATAAGTGAAATTCCTT...GAGTGGTGTGAAGCCACGAAACATCCTGAGATAAACTGTTGTGGGGAGTATAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR TCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTTTAGCACCACATACTTaGGGATGTGGTTCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCLAPHT*GCGSQS
Trigger: ACTCTGAGAACCACATCCTCAAGTATGTGGTGCTAA...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTACGAATGTGTTGGCTaGTTTCTCTATCTGGCGAAC +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMYECVG*FLYLAN
Trigger: GTTCGCCAGATAGAGAAATCAGCCAACACATTCGTA...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTTTTCTCCTCAGACCTaGGAGGAGATTCTTTCAGAC +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMFSPQT*EEILSD
Trigger: GTCTGAAAGAATCTCCTCTCAGGTCTGAGGAGAAAA...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000333722.9
CDS-3UTR TCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTTGCAAAATCATCCACTaGGCCGAGATAGCAGAGAAA +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCCKIIH*AEIAEK
Trigger: TTTCTCTGCTATCTCGGCTCAGTGGATGATTTTGCA...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCCCAGACTGTGCAAATaGATAGACATGAGTTATACA +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQPRLCK*IDMSYT
Trigger: TGTATAACTCATGTCTATTCATTTGCACAGTCTGGG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGCGAATTATTAGTTTCTaGTCCCAGACTGTGCAAATG +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQRIISF*SQTVQM
Trigger: CATTTGCACAGTCTGGGATCAGAAACTAATAATTCG...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTGACCTATATGGCTTTTaGCTTCCAATAGCAGGACTG +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCDLYGF*LPIAGL
Trigger: CAGTCCTGCTATTGGAAGTCAAAAGCCATATAGGTC...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR GCA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCTCCCCGGCATCCTATTaGTTAAGCAACAGAACTATT +
Preference number: 4 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVSPASY*LSNRTI
Trigger: AATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGA...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCATTCTATACAGCTATaGCTGTGTTCTGCTCATTCT +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQHSIQL*LCSAHS
Trigger: AGAATGAGCAGAACACAGGCATAGCTGTATAGAATG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCACAGGACAAGATTTTaGAATCTGAGGCTCACTAAT +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQHRTRF*NLRLTN
Trigger: ATTAGTGAGCCTCAGATTCCAAAATCTTGTCCTGTG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGATGCCTGAAACAGAGTaGCACCATGCACTTAATTTT +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQMPETE*HHALNF
Trigger: AAAATTAAGTGCATGGTGCCACTCTGTTTCAGGCAT...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGTTGAAGTCAAATAGCTaGTCATTTGGCTCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAELKSNS*SFGSVR
Trigger: TCTGACAGAGCCAAATGACCAGCTATTTGACTTCAA...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGATGAAGGAAAAGACTTaGACACTTTATGGGGTGATG +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQMKEKT*TLYGVM
Trigger: CATCACCCCATAAAGTGTCCAAGTCTTTTCCTTCAT...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGTCCGGCAAGTACTCATaGAGTTTGTTTACTATGAAA +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAESGKYS*SLFTMK
Trigger: TTTCATAGTAAACAAACTTCATGAGTACTTGCCGGA...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGTTATCAGGAGAATTTTaGGAACCTTCTTGCTTTTGC +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAELSGEF*EPSCFC
Trigger: GCAAAAGCAAGAAGGTTCTCAAAATTCTCCTGATAA...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGATTCAGATATATTTTaGCAGAGATTTTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQDSDIF*QRFCSQ
Trigger: CTGGGAGCAAAATCTCTGTCAAAATATATCTGAATC...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGTCTCTAAATTTGAGTTaGTCTGTGAAGGGGAATCTA +
Preference number: 4 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQSLNLS*SVKGNL
Trigger: TAGATTCCCCTTCACAGAGCAACTCAAATTTAGAGA...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CCA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGATTCTTTCAGACTTCTaGACTCTTTGCTTCTCCAAA +
Preference number: 4 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEILSDF*TLCFSK
Trigger: TTTGGAGAAGCAAAGAGTCCAGAAGTCTGAAAGAAT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCGAAATAATGGTTTTTaGATGGCTCTGAGTACAGAA +
Preference number: 4 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQRNNGF*MALSTE
Trigger: TTCTGTACTCAGAGCCATCCAAAAACCATTATTTCG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGGTTTTTAAATGGTTGTaGGAGAGCCATAACTGCTCG +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMVFKWL*ESHNCS
Trigger: CGAGCAGTTATGGCTCTCCCACAACCATTTAAAAAC...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTATTCTTTGTCCGGTTTaGGGTAATACTTGCCTATGT +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCILCPV*GNTCLC
Trigger: ACATAGGCAAGTATTACCTCAAACCGGACAAAGAAT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGATTCTTTGTCCGGTTTaGGGTAATACTTGCCTATGT +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMILCPV*GNTCLC
Trigger: ACATAGGCAAGTATTACCTCAAACCGGACAAAGAAT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGCCCAGACTGTGCAAATaGATAGACATGAGTTATACA +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMPRLCK*IDMSYT
Trigger: TGTATAACTCATGTCTATTCATTTGCACAGTCTGGG...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTATGTGGACTCCTCATTaGGTAATGAAGGAAAAGACT +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCMWTPH*VMKEKT
Trigger: AGTCTTTTCCTTCATTACCCAATGAGGAGTCCACAT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTTGCAAGGCTGGCATGTaGATAAAGTACCTGAATTCT +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTCKAGM*IKYLNS
Trigger: AGAATTCAGGTACTTTATTCACATGCCAGCCTTGCA...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGATTCTTTCAGACTTCTaGACTCTTTGCTTCTCCAAA +
Preference number: 4 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMILSDF*TLCFSK
Trigger: TTTGGAGAAGCAAAGAGTCCAGAAGTCTGAAAGAAT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTAGACAAGTTTTTAAATaGTTGTGGGAGAGCCATAAC +
Preference number: 4 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCRQVFK*LWESHN
Trigger: GTTATGGCTCTCCCACAACCATTTAAAAACTTGTCT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR GCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTCATTCTATACAGCTATaGCTGTGTTCTGCTCATTCT +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTHSIQL*LCSAHS
Trigger: AGAATGAGCAGAACACAGGCATAGCTGTATAGAATG...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTATGATACGAATGTGTTaGCTGATTTCTCTATCTGGC +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTMIRMC*LISLSG
Trigger: GCCAGATAGAGAAATCAGCCAACACATTCGTATCAT...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTTTGAAGTCAAATAGCTaGTCATTTGGCTCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTLKSNS*SFGSVR
Trigger: TCTGACAGAGCCAAATGACCAGCTATTTGACTTCAA...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR TCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTTCCGGCAAGTACTCATaGAGTTTGTTTACTATGAAA +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTSGKYS*SLFTMK
Trigger: TTTCATAGTAAACAAACTTCATGAGTACTTGCCGGA...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CCA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTAATAGAAAAGGTCACTaGTCTTCCAGAAAAGCCTTT +
Preference number: 4 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTNRKGH*SSRKAF
Trigger: AAAGGCTTTTCTGGAAGACCAGTGACCTTTTCTATT...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS GCA 90 bp CGGGCGGCAGATGCCGCCGCAGGAACACATCCAGGCGGCTGTTCCTaGGCGCGGGGAAGCCGGACGGCAAGGGGCTGGCCATGCCCGGCG +
Preference number: 5 (lower is better)
Translates to: RAADAAAGTHPGGCS*ARGSRTARGWPCPA
Trigger: CGCCGGGCATGGCCAGCCCCTTGCCGTCCGGCTTCCCCGCGCGCAGGAACAGCCGCCTGGATGTGTTCCTGCGGCGGCATCTGCCGCCCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS CCA 90 bp CAATGGCCACGACGTCCCGCAGAGCCACTACCCGCCGGATGGACTTaGGCGGGTTCTCGGTTAGGTAGACGAGCCGGTCGCTTAGCACCA +
Preference number: 5 (lower is better)
Translates to: QWPRRPAEPLPAGWT*AGSRLGRRAGRLAP
Trigger: TGGTGCTAAGCGACCGGCTCGTCTACCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGGTAGTGGCTCTGCGGGACGTCGTGGCCATTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS CCA 90 bp TCAGGTCAATGGCCACGACGTCCCGCAGAGCCACTACCCGCCGGATaGACTTGGGCGGGTTCTCGGTTAGGTAGACGAGCCGGTCGCTTA +
Preference number: 5 (lower is better)
Translates to: SGQWPRRPAEPLPAG*TWAGSRLGRRAGRL
Trigger: TAAGCGACCGGCTCGTCTACCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGGTAGTGGCTCTGCGGGACGTCGTGGCCATTGACCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS CCA 90 bp CACATACTTGAGGATGTGGTTCTCAGAGTTGGACACCACGATGCATaGCTCGTAGGCGCGGACCGCGTCGTAGACCTCGGGCGGCAGATG +
Preference number: 5 (lower is better)
Translates to: HILEDVVLRVGHHDA*LVGADRVVDLGRQM
Trigger: CATCTGCCGCCCGAGGTCTACGACGCGGTCCGCGCCTACGAGCCATGCATCGTGGTGTCCAACTCTGAGAACCACATCCTCAAGTATGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS TCA 90 bp GGTTCTCGGTTAGGTAGACGAGCCGGTCGCTTAGCACCACATACTTaGGGATGTGGTTCTCAGAGTTGGACACCACGATGCATGGCTCGT +
Preference number: 5 (lower is better)
Translates to: GSRLGRRAGRLAPHT*GCGSQSWTPRCMAR
Trigger: ACGAGCCATGCATCGTGGTGTCCAACTCTGAGAACCACATCCTCAAGTATGTGGTGCTAAGCGACCGGCTCGTCTACCTAACCGAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS TCA 90 bp AAGGTAGGGGTCGAAAGGCACCTTGGCCATGAAGGGACAGCTTTTTaGGGCCTGGACGAGGACAGAGAGTTGAGTCCTTGGATGGTGTAC +
Preference number: 5 (lower is better)
Translates to: KVGVERHLGHEGTAF*GLDEDRELSPWMVY
Trigger: GTACACCATCCAAGGACTCAACTCTCTGTCCTCGTCCAGGCCTCAAAAAGCTGTCCCTTCATGGCCAAGGTGCCTTTCGACCCCTACCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS TCA 90 bp GAAGTCCCTGGGGTTCTTTTGTGTTTGTTGTGCAAGATGGCTCGCTaGCAGCCTTGCCAGTTGTTGGTGCAGACTGAGAGCTCCTCCTGG +
Preference number: 5 (lower is better)
Translates to: EVPGVLLCLLCKMAR*QPCQLLVQTESSSW
Trigger: CCAGGAGGAGCTCTCAGTCTGCACCAACAACTGGCAAGGCTGTCAGCGAGCCATCTTGCACAACAAACACAAAAGAACCCCAGGGACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS GCA 90 bp AAAGGTCACTGGTCTCAGATGGAAATGCAGAAATCACCCGTCTTCTaGGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTT +
Preference number: 5 (lower is better)
Translates to: KGHWSQMEMQKSPVF*VAHAGSCRPELFLF
Trigger: AAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGACCAGTGACCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000536975.5
ENST00000542397.5
CDS CCA 90 bp GTGATCTGGAAGTCCCTGGGGTTCTTTTGTGTTTGTTGTGCAAGATaGCTCGCTGACAGCCTTGCCAGTTGTTGGTGCAGACTGAGAGCT +
Preference number: 5 (lower is better)
Translates to: VIWKSLGFFCVCCAR*LADSLASCWCRLRA
Trigger: AGCTCTCAGTCTGCACCAACAACTGGCAAGGCTGTCAGCGAGCCATCTTGCACAACAAACACAAAAGAACCCCAGGGACTTCCAGATCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGACCCGCCGGATGGACTaGGGCGGGTTCTCGGTTAGG +
Preference number: 5 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAETRRMD*GGFSVR
Trigger: CCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGGT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGAGAGTGTTAAATGTCTaGTCACAGGCAGAGAATGTA +
Preference number: 5 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAERVLNV*SQAENV
Trigger: TACATTCTCTGCCTGTGACAAGACATTTAACACTCT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGTTCTCTAAATTTGAGTaGCTCTGTGAAGGGGAATCT +
Preference number: 5 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAEFSKFE*LCEGES
Trigger: AGATTCCCCTTCACAGAGCAACTCAAATTTAGAGAA...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS TCA 90 bp TCCTGCTTCTTGGTTTATCAGGCAATGCGCAGTGAGGTGTTGAAATaGAAGGGTCAAGCTGTGGTGACTACTAGGGCCAAGTCAAGAGGG +
Preference number: 5 (lower is better)
Translates to: SCFLVYQAMRSEVLK*KGQAVVTTRAKSRG
Trigger: CCCTCTTGACTTGGCCCTAGTAGTCACCACAGCTTGACCCTTTCATTTCAACACCTCACTGCGCATTGCCTGATAAACCAAGAAGCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535515.5
CDS-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCAGACTTCTGGACTCTTaGCTTCTCCAAAAGGCAAGG +
Preference number: 5 (lower is better)
Translates to: GRAELILSLSSCGFISTFRLLDS*LLQKAR
Trigger: CCTTGCCTTTTGGAGAAGCAAAGAGTCCAGAAGTCT...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp GCCTGCATGACTACTAGCCCAGATCCAGGGCACTGCGGAGAAGCTAAGGCAGAGACCATGCACTTAATTTaGTTGAAGTCCAAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: ACMTTSPDPGHCGEAKAETMHLI*LKSKLL
Trigger: AAGAAGCTTGGACTTCAACAAAATTAAGTGCATGGT...CTCTGCCTTAGCTTCTCCGCAGTGCCCTGGATCTGGGCTAGTAGTCATGCAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGCAGCCTTGCCAGTTGTaGGTGCAGACTGAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQQPCQL*VQTESS
Trigger: GGAGCTCTCAGTCTGCACCAACAACTGGCAAGGCTG...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCAATGTGGACTCCTCATaGGGTAATGAAGGAAAAGAC +
Preference number: 5 (lower is better)
Translates to: GRAELILSLSSCGFISTFNVDSS*GNEGKD
Trigger: GTCTTTTCCTTCATTACCCAATGAGGAGTCCACATT...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCCCTTTTTCTCTAAATTaGAGTTGCTCTGTGAAGGGG +
Preference number: 5 (lower is better)
Translates to: GRAELILSLSSCGFISTFPFSLN*SCSVKG
Trigger: CCCCTTCACAGAGCAACTCAAATTTAGAGAAAAAGG...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGATGTGGTTCTCAGAGTaGGACACCACGATGCATGGC +
Preference number: 5 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEMWFSE*DTTMHG
Trigger: GCCATGCATCGTGGTGTCCAACTCTGAGAACCACAT...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCTCAAGTCATAATAAGTaGAATGGAGAGTCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: GRAELILSLSSCGFISTFSSHNK*NGESSS
Trigger: GGAACTGGACTCTCCATTCAACTTATTATGACTTGA...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGGGGGGCCTGACTTGCTaGAAGTCAAATAGCTGGTCA +
Preference number: 5 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEGGLTC*KSNSWS
Trigger: TGACCAGCTATTTGACTTCAAGCAAGTCAGGCCCCC...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp GGCAGAGCTGAGTTGATCCTCTCGTTGTCATCCTGCGGGTTCATCAGTACATTCTTGATTGACCGTCTCTaGAAAATAATCCCCCATCTA +
Preference number: 5 (lower is better)
Translates to: GRAELILSLSSCGFISTFLIDRL*KIIPHL
Trigger: TAGATGGGGGATTATTTTCAAGAGACGGTCAATCAA...GAATGTACTGATGAACCCGCAGGATGACAACGAGAGGATCAACTCAGCTCTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGGAGTTGATCCTCTCGTaGTCATCCTGCGGGTTCATC +
Preference number: 5 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQELILS*SSCGFI
Trigger: GATGAACCCGCAGGATGACAACGAGAGGATCAACTC...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCCAGAGAGTTGAGTCCTaGGATGGTGTACTGCTCTCC +
Preference number: 5 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVQRVES*DGVLLS
Trigger: GGAGAGCAGTACACCATCCAAGGACTCAACTCTCTG...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTATGTGGTTCTCAGAGTaGGACACCACGATGCATGGC +
Preference number: 5 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCMWFSE*DTTMHG
Trigger: GCCATGCATCGTGGTGTCCAACTCTGAGAACCACAT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCTTAGCACCACATACTaGAGGATGTGGTTCTCAGAG +
Preference number: 5 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQLSTTY*RMWFSE
Trigger: CTCTGAGAACCACATCCTCAAGTATGTGGTGCTAAG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGCTCCCCGGCATCCTATaGCTTAAGCAACAGAACTAT +
Preference number: 5 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAELPGIL*LKQQNY
Trigger: ATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGAG...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CTGTCAGAACCTGGAATAAAATGTCCTAGTAATTATCTCCACTGCCCAACACAGCTCCCCGGCATCCTATaGCTTAAGCAACAGAACTAT +
Preference number: 5 (lower is better)
Translates to: LSEPGIKCPSNYLHCPTQLPGIL*LKQQNY
Trigger: ATAGTTCTGTTGCTTAAGCAATAGGATGCCGGGGAG...CTGTGTTGGGCAGTGGAGATAATTACTAGGACATTTTATTCCAGGTTCTGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp ATAGGTGGAGGAGGAGGGTGTCATCCTATTGCTCAGCATTTCCCAAATAATCACCAAGTTTTTAAATGGTaGTGGGAGAGCCATAACTGC +
Preference number: 5 (lower is better)
Translates to: IGGGGGCHPIAQHFPNNHQVFKW*WESHNC
Trigger: GCAGTTATGGCTCTCCCACAACCATTTAAAAACTTG...GTGATTATTTGGGAAATGCTGAGCAATAGGATGACACCCTCCTCCTCCACCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTGGGGGCCTGACTTGCTaGAAGTCAAATAGCTGGTCA +
Preference number: 5 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCGGLTC*KSNSWS
Trigger: TGACCAGCTATTTGACTTCAAGCAAGTCAGGCCCCC...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGGACGAGGACAGAGAGTaGAGTCCTTGGATGGTGTAC +
Preference number: 5 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMDEDRE*SPWMVY
Trigger: GTACACCATCCAAGGACTCAACTCTCTGTCCTCGTC...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTGGGTCGAAAGGCACCTaGGCCATGAAGGGACAGCTT +
Preference number: 5 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTGSKGT*AMKGQL
Trigger: AAGCTGTCCCTTCATGGCCAAGGTGCCTTTCGACCC...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCCTTAGCACCACATACTaGAGGATGTGGTTCTCAGAG +
Preference number: 5 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVLSTTY*RMWFSE
Trigger: CTCTGAGAACCACATCCTCAAGTATGTGGTGCTAAG...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGAAGACCCCTCACCACTaGTTTCACAATACTGGCCAC +
Preference number: 5 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMKTPHH*FHNTGH
Trigger: GTGGCCAGTATTGTGAAACAAGTGGTGAGGGGTCTT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGAAGTTGAATGGTAGGTaGAGTGATGGGGTAACACAA +
Preference number: 5 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVKLNGR*SDGVTQ
Trigger: TTGTGTTACCCCATCACTCAACCTACCATTCAACTT...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS TCA 90 bp TGTATAATTTCAATGCATGCCACCAGCTCATCAACCCTTTGGCTTTaGTTTTGTAGTGCATTCTTATCCCTAGACTCCGGCAAGTACTCA +
Preference number: 5 (lower is better)
Translates to: CIISMHATSSSTLWL*FCSAFLSLDSGKYS
Trigger: TGAGTACTTGCCGGAGTCTAGGGATAAGAATGCACTACAAAATCAAAGCCAAAGGGTTGATGAGCTGGTGGCATGCATTGAAATTATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000333722.9
ENST00000536975.5
ENST00000541802.1
ENST00000542397.5
ENST00000543942.7
CDS-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGGATGATACGAATGTGTaGGCTGATTTCTCTATCTGG +
Preference number: 5 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEDDTNV*ADFSIW
Trigger: CCAGATAGAGAAATCAGCCAACACATTCGTATCATC...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGATGATACGAATGTGTaGGCTGATTTCTCTATCTGG +
Preference number: 5 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQDDTNV*ADFSIW
Trigger: CCAGATAGAGAAATCAGCCAACACATTCGTATCATC...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTAGACTTCTGGACTCTTaGCTTCTCCAAAAGGCAAGG +
Preference number: 5 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCRLLDS*LLQKAR
Trigger: CCTTGCCTTTTGGAGAAGCAAAGAGTCCAGAAGTCT...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCAGAACCTTCTTGCTTTaGCTGCTAAGGTGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVRTFLL*LLRWKR
Trigger: TCTCTTCCACCTTAGCAGCAAAAGCAAGAAGGTTCT...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp ATGGAGAGTCCAGTTCCTATGTTCTTAGAAGTCCAAATTCAACACCTCACGGTGTCAAGTCATAATAAGTaGAATGGAGAGTCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: MESPVPMFLEVQIQHLTVSSHNK*NGESSS
Trigger: GGAACTGGACTCTCCATTCAACTTATTATGACTTGA...CACCGTGAGGTGTTGAATTTGGACTTCTAAGAACATAGGAACTGGACTCTCCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGAGACCTATATGGCTTTaGACTTCCAATAGCAGGACT +
Preference number: 5 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQRPIWL*TSNSRT
Trigger: AGTCCTGCTATTGGAAGTCAAAAGCCATATAGGTCT...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTGTCCCTGGGGTTCTTTaGTGTTTGTTGTGCAAGATG +
Preference number: 5 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCVPGVL*CLLCKM
Trigger: CATCTTGCACAACAAACACAAAAGAACCCCAGGGAC...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS TCA 90 bp TTTCCATTCCCATTGCACTTGAAAGGAATTTCACTTATGGAGTTGTaGTCTGGAAGTCCCTGGGGTTCTTTTGTGTTTGTTGTGCAAGAT +
Preference number: 5 (lower is better)
Translates to: FPFPLHLKGISLMEL*SGSPWGSFVFVVQD
Trigger: ATCTTGCACAACAAACACAAAAGAACCCCAGGGACTTCCAGATCACAACTCCATAAGTGAAATTCCTTTCAAGTGCAATGGGAATGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS-3UTR CAA 90 bp CAGAGAAACACACTACTCCATTTCAGAGTGTTAAATGTCTTGTCACAGGCAGAGCCGTTCTTTTCTTCCTaGACTTTCTTGTTGTTAGCT +
Preference number: 5 (lower is better)
Translates to: QRNTLLHFRVLNVLSQAEPFFSS*TFLLLA
Trigger: AGCTAACAACAAGAAAGTCAAGGAAGAAAAGAACGG...CTCTGCCTGTGACAAGACATTTAACACTCTGAAATGGAGTAGTGTGTTTCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp ACTTTGGGTAAAAAGAAAGGAGGATTACTTGAAGTTAGTGCAAAATCATCCACTAAGACCCCTCACCACTaGTTTCACAATACTGGCCAC +
Preference number: 5 (lower is better)
Translates to: TLGKKKGGLLEVSAKSSTKTPHH*FHNTGH
Trigger: GTGGCCAGTATTGTGAAACAAGTGGTGAGGGGTCTT...AGTGGATGATTTTGCACTAACTTCAAGTAATCCTCCTTTCTTTTTACCCAAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGGAATACTTTTGTCAAGTTGAATGGTAGGTaGAGTGATGGGGTAACACAA +
Preference number: 5 (lower is better)
Translates to: HSIQLCLCSAHSSRNTFVKLNGR*SDGVTQ
Trigger: TTGTGTTACCCCATCACTCAACCTACCATTCAACTT...GACAAAAGTATTCCTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGAATGAAGGAAAAGACTaGGACACTTTATGGGGTGAT +
Preference number: 5 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQNEGKD*DTLWGD
Trigger: ATCACCCCATAAAGTGTCCAAGTCTTTTCCTTCATT...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp AAAGAGGAAGTGACATTCTATACAGCTATGCCTGTGTTCTGCTCATTCTTCCAGTTGATTGACCGTCTCTaGAAAATAATCCCCCATCTA +
Preference number: 5 (lower is better)
Translates to: KEEVTFYTAMPVFCSFFQLIDRL*KIIPHL
Trigger: TAGATGGGGGATTATTTTCAAGAGACGGTCAATCAA...CTGGAAGAATGAGCAGAACACAGGCATAGCTGTATAGAATGTCACTTCCTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGCAAGTTTTTAAATGGTaGTGGGAGAGCCATAACTGC +
Preference number: 5 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMQVFKW*WESHNC
Trigger: GCAGTTATGGCTCTCCCACAACCATTTAAAAACTTG...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGAATGTGGACTCCTCATaGGGTAATGAAGGAAAAGAC +
Preference number: 5 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMNVDSS*GNEGKD
Trigger: GTCTTTTCCTTCATTACCCAATGAGGAGTCCACATT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp CGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGTAGGTTTCTTTGTCCGTTCTTTTCTTCCTaGACTTTCTTGTTGTTAGCT +
Preference number: 5 (lower is better)
Translates to: RYCLAPLYVCQNGCRFLCPFFSS*TFLLLA
Trigger: AGCTAACAACAAGAAAGTCAAGGAAGAAAAGAACGG...ACAAAGAAACCTACATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGAGAGTGTTAAATGTCTaGTCACAGGCAGAGAATGTA +
Preference number: 5 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMRVLNV*SQAENV
Trigger: TACATTCTCTGCCTGTGACAAGACATTTAACACTCT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS-3UTR CAA 90 bp TTTTCTGGAGAAACGCTACTGTTTAGCACCACTTTATGTATGTCAGAATGGATGAATGAAGGAAAAGACTaGGACACTTTATGGGGTGAT +
Preference number: 5 (lower is better)
Translates to: FSGETLLFSTTLCMSEWMNEGKD*DTLWGD
Trigger: ATCACCCCATAAAGTGTCCAAGTCTTTTCCTTCATT...CATCCATTCTGACATACATAAAGTGGTGCTAAACAGTAGCGTTTCTCCAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS CCA 72 bp CTGGCCATGCCCGGCGCCCGCAGCGTGGCGGAGTGCTaGGACTCGAGGCCCTCAGCTCGCCCTCTCCCCGCC +
Preference number: 6 (lower is better)
Translates to: LAMPGARSVAEC*DSRPSARPLPA
Trigger: GGCGGGGAGAGGGCGAGCTGAGGGCCTCGAGTCCCAGCACTCCGCCACGCTGCGGGCGCCGGGCATGGCCAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS CCA 72 bp TGTTCCTGCGCGCGGGGAAGCCGGACGGCAAGGGGCTaGCCATGCCCGGCGCCCGCAGCGTGGCGGAGTGCT +
Preference number: 6 (lower is better)
Translates to: CSCARGSRTARG*PCPAPAAWRSA
Trigger: AGCACTCCGCCACGCTGCGGGCGCCGGGCATGGCCAGCCCCTTGCCGTCCGGCTTCCCCGCGCGCAGGAACA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS GCA 72 bp GATGCCGCCGCAGGAACACATCCAGGCGGCTGTTCCTaGGCGCGGGGAAGCCGGACGGCAAGGGGCTGGCCA +
Preference number: 6 (lower is better)
Translates to: DAAAGTHPGGCS*ARGSRTARGWP
Trigger: TGGCCAGCCCCTTGCCGTCCGGCTTCCCCGCGCGCAGGAACAGCCGCCTGGATGTGTTCCTGCGGCGGCATC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000333722.9
ENST00000543942.7
CDS CCA 72 bp CGACGTCCCGCAGAGCCACTACCCGCCGGATGGACTTaGGCGGGTTCTCGGTTAGGTAGACGAGCCGGTCGC +
Preference number: 6 (lower is better)
Translates to: RRPAEPLPAGWT*AGSRLGRRAGR
Trigger: GCGACCGGCTCGTCTACCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGGTAGTGGCTCTGCGGGACGTCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS CCA 72 bp TGGCCACGACGTCCCGCAGAGCCACTACCCGCCGGATaGACTTGGGCGGGTTCTCGGTTAGGTAGACGAGCC +
Preference number: 6 (lower is better)
Translates to: WPRRPAEPLPAG*TWAGSRLGRRA
Trigger: GGCTCGTCTACCTAACCGAGAACCCGCCCAAGTCCATCCGGCGGGTAGTGGCTCTGCGGGACGTCGTGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS CCA 72 bp GAGGATGTGGTTCTCAGAGTTGGACACCACGATGCATaGCTCGTAGGCGCGGACCGCGTCGTAGACCTCGGG +
Preference number: 6 (lower is better)
Translates to: EDVVLRVGHHDA*LVGADRVVDLG
Trigger: CCCGAGGTCTACGACGCGGTCCGCGCCTACGAGCCATGCATCGTGGTGTCCAACTCTGAGAACCACATCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS GCA 72 bp TGGTCTCAGATGGAAATGCAGAAATCACCCGTCTTCTaGGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTG +
Preference number: 6 (lower is better)
Translates to: WSQMEMQKSPVF*VAHAGSCRPEL
Trigger: CAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000536975.5
ENST00000542397.5
CDS TCA 72 bp GGACAGCTTTTTGAGGCCTGGACGAGGACAGAGAGTTaGGTCCTTGGATGGTGTACTGCTCTCCTGCTGGTC +
Preference number: 6 (lower is better)
Translates to: GQLFEAWTRTES*VLGWCTALLLV
Trigger: GACCAGCAGGAGAGCAGTACACCATCCAAGGACTCAACTCTCTGTCCTCGTCCAGGCCTCAAAAAGCTGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS TCA 72 bp GTCGAAAGGCACCTTGGCCATGAAGGGACAGCTTTTTaGGGCCTGGACGAGGACAGAGAGTTGAGTCCTTGG +
Preference number: 6 (lower is better)
Translates to: VERHLGHEGTAF*GLDEDRELSPW
Trigger: CCAAGGACTCAACTCTCTGTCCTCGTCCAGGCCTCAAAAAGCTGTCCCTTCATGGCCAAGGTGCCTTTCGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS CCA 72 bp ACGAGCCGGTCGCTTAGCACCACATACTTGAGGATGTaGTTCTCAGAGTTGGACACCACGATGCATGGCTCG +
Preference number: 6 (lower is better)
Translates to: TSRSLSTTYLRM*FSELDTTMHGS
Trigger: CGAGCCATGCATCGTGGTGTCCAACTCTGAGAACCACATCCTCAAGTATGTGGTGCTAAGCGACCGGCTCGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS TCA 72 bp TTAGGTAGACGAGCCGGTCGCTTAGCACCACATACTTaGGGATGTGGTTCTCAGAGTTGGACACCACGATGC +
Preference number: 6 (lower is better)
Translates to: LGRRAGRLAPHT*GCGSQSWTPRC
Trigger: GCATCGTGGTGTCCAACTCTGAGAACCACATCCTCAAGTATGTGGTGCTAAGCGACCGGCTCGTCTACCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS CCA 72 bp AAGTCCCTGGGGTTCTTTTGTGTTTGTTGTGCAAGATaGCTCGCTGACAGCCTTGCCAGTTGTTGGTGCAGA +
Preference number: 6 (lower is better)
Translates to: KSLGFFCVCCAR*LADSLASCWCR
Trigger: TCTGCACCAACAACTGGCAAGGCTGTCAGCGAGCCATCTTGCACAACAAACACAAAAGAACCCCAGGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS TCA 72 bp AGGCTCCTGCTTCTTGGTTTATCAGGCAATGCGCAGTaGGGTGTTGAAATGAAAGGGTCAAGCTGTGGTGAC +
Preference number: 6 (lower is better)
Translates to: RLLLLGLSGNAQ*GVEMKGSSCGD
Trigger: GTCACCACAGCTTGACCCTTTCATTTCAACACCTCACTGCGCATTGCCTGATAAACCAAGAAGCAGGAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535515.5
CDS TCA 72 bp TGGTACAACAGAACTGCTTGGCAGGGACTTAGCAGCTaGAATGAAGCTGAAAGACCCCTCACCACTTGTTTC +
Preference number: 6 (lower is better)
Translates to: WYNRTAWQGLSS*NEAERPLTTCF
Trigger: GAAACAAGTGGTGAGGGGTCTTTCAGCTTCATTTCAGCTGCTAAGTCCCTGCCAAGCAGTTCTGTTGTACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000333722.9
ENST00000536975.5
ENST00000542397.5
ENST00000543942.7
CDS CAA 90 bp TCCTGCTGGTCCCTGAGAGGAGATTCTTTCAGACTTCTGGACTCTTaGCTTCTCCAAAAGGCAAGGCCGTTCTTTTCTTCCTTGACTTTC +
Preference number: 6 (lower is better)
Translates to: SCWSLRGDSFRLLDS*LLQKARPFFSSLTF
Trigger: GAAAGTCAAGGAAGAAAAGAACGGCCTTGCCTTTTGGAGAAGCAAAGAGTCCAGAAGTCTGAAAGAATCTCCTCTCAGGGACCAGCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS CAA 72 bp GACCTGAGAGGAGATTCTTTCAGACTTCTGGACTCTTaGCTTCTCCAAAAGGCAAGGCCGTTCTTTTCTTCC +
Preference number: 6 (lower is better)
Translates to: DLRGDSFRLLDS*LLQKARPFFSS
Trigger: GGAAGAAAAGAACGGCCTTGCCTTTTGGAGAAGCAAAGAGTCCAGAAGTCTGAAAGAATCTCCTCTCAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000333722.9
CDS CAA 72 bp TCCCTGAGAGGAGATTCTTTCAGACTTCTGGACTCTTaGCTTCTCCAAAAGGCAAGGCCGTTCTTTTCTTCC +
Preference number: 6 (lower is better)
Translates to: SLRGDSFRLLDS*LLQKARPFFSS
Trigger: GGAAGAAAAGAACGGCCTTGCCTTTTGGAGAAGCAAAGAGTCCAGAAGTCTGAAAGAATCTCCTCTCAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000543942.7
CDS CAA 90 bp TTCTCCTCAGACCTGAGAGGAGATTCTTTCAGACTTCTGGACTCTTaGCTTCTCCAAAAGGCAAGGCCGTTCTTTTCTTCCTTGACTTTC +
Preference number: 6 (lower is better)
Translates to: FSSDLRGDSFRLLDS*LLQKARPFFSSLTF
Trigger: GAAAGTCAAGGAAGAAAAGAACGGCCTTGCCTTTTGGAGAAGCAAAGAGTCCAGAAGTCTGAAAGAATCTCCTCTCAGGTCTGAGGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000333722.9
CDS CAA 72 bp ATAAAGTACCACAGTATGAGCAGAGGCTCCTGCTTCTaGGTTTATCAGGCAATGCGCAGTGAGGTGTTGAAA +
Preference number: 6 (lower is better)
Translates to: IKYHSMSRGSCF*VYQAMRSEVLK
Trigger: TTTCAACACCTCACTGCGCATTGCCTGATAAACCAAGAAGCAGGAGCCTCTGCTCATACTGTGGTACTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000535515.5
CDS CCA 72 bp GATGGGGTAACACAATGGGAGCCTTTTCTGCAAGGCTaGCATGTGAATAAAGTACCTGAATTCTTCTCTGTA +
Preference number: 6 (lower is better)
Translates to: DGVTQWEPFLQG*HVNKVPEFFSV
Trigger: TACAGAGAAGAATTCAGGTACTTTATTCACATGCCAGCCTTGCAGAAAAGGCTCCCATTGTGTTACCCCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000333722.9
ENST00000536975.5
ENST00000542397.5
ENST00000543942.7
CDS CCA 72 bp ATAGATGATACGAATGTGTTGGCTGATTTCTCTATCTaGCGAACTCAAAAATTCCGGGTAATCATCAATCAG +
Preference number: 6 (lower is better)
Translates to: IDDTNVLADFSI*RTQKFRVIINQ
Trigger: CTGATTGATGATTACCCGGAATTTTTGAGTTCGCCAGATAGAGAAATCAGCCAACACATTCGTATCATCTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000333722.9
ENST00000543259.1
ENST00000543942.7
CDS CAA 90 bp CATTGTTTGTTTCTATTCAACCAATTTCAGAACTTCATGAAAAAGTaGAATGGTAGGTTGAGTGATGGGGTAACACAATGGGAGCCTTTT +
Preference number: 6 (lower is better)
Translates to: HCLFLFNQFQNFMKK*NGRLSDGVTQWEPF
Trigger: AAAAGGCTCCCATTGTGTTACCCCATCACTCAACCTACCATTCAACTTTTTCATGAAGTTCTGAAATTGGTTGAATAGAAACAAACAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000333722.9
ENST00000535515.5
ENST00000536975.5
ENST00000542397.5
ENST00000543942.7
CDS CAA 72 bp AAACTAGATGAGCACTTAAGAGCAAAGTTCATATCATaGAAATCAACCAGTTTTGGAGACCATCTCAAGTAC +
Preference number: 6 (lower is better)
Translates to: KLDEHLRAKFIS*KSTSFGDHLKY
Trigger: GTACTTGAGATGGTCTCCAAAACTGGTTGATTTCAATGATATGAACTTTGCTCTTAAGTGCTCATCTAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000541802.1