RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C12ORF50 (Homo sapiens)

Ensembl gene IDs: ENSG00000165805

Ensembl transcript IDs: ENST00000298699.7, ENST00000546547.1, ENST00000550553.5, ENST00000551163.2, ENST00000551944.1

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTGTAGGACCCATGCGTaGGCCTGCTGCGGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYCRTHA*ACCGKV
Trigger: CACCTTCCCGCAGCAGGCCCACGCATGGGTCCTACA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTCATGCGTGGGCCTGCTaGGGGAAGGTGCATTCAACG +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFHAWAC*GKVHST
Trigger: CGTTGAATGCACCTTCCCGCAGCAGGCCCACGCATG...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTACCCATGCGTGGGCCTaGTGCGGGAAGGTGCATTCA +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFTHAWA*CGKVHS
Trigger: TGAATGCACCTTCCCGCAGCAGGCCCACGCATGGGT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATCCTGCTGCGGGAAGGTaGATTCAACGCGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYPAAGR*IQRDSP
Trigger: AGGACTGTCGCGTTGAATGCACCTTCCCGCAGCAGG...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATGGTTTCAGAGGTTCTTaGCTCTGGGACTGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYGFRGS*LWDWSG
Trigger: TCCACTCCAGTCCCAGAGTCAAGAACCTCTGAAACC...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTAGCACACAGTGTCACTaGCAAGGGCCTCTTCACAGT +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFSTQCH*QGPLHS
Trigger: ACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTCAACGCGACAGTCCTaGCAGCATCTCTTTGAACGT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYSTRQS*QHLFER
Trigger: ACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTCTTGGGGCCTGTACTaGTCTCTGCATTCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYSWGLY*SLHSRV
Trigger: AACTCTGGAATGCAGAGAGCAGTACAGGCCCCAAGA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTGTCGGAATCGGCACTaGGAACCCTTCTCTAGCTTT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYCRNRH*EPFSSF
Trigger: AAAGCTAGAGAAGGGTTCCCAGTGCCGATTCCGACA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTGCTTTGCAGAAACGCTaGAAGTGGTTGCTAGTAAGC +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFALQKR*KWLLVS
Trigger: GCTTACTAGCAACCACTTTCAGCGTTTCTGCAAAGC...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTACACAACCAAGAGGCTaGGTTTCCCAGAAGCATGAA +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFTQPRG*VSQKHE
Trigger: TTCATGCTTCTGGGAAACTCAGCCTCTTGGTTGTGT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATATTTGTCTGGACTaGGGTTGGGTTTGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFYICLD*GWVWVP
Trigger: GGGAACCCAAACCCAACCTCAGTCCAGACAAATATA...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATGCCTGTACTGCTCTCTaGATTCCAGAGTTAGGAAAG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYACTAL*IPELGK
Trigger: CTTTCCTAACTCTGGAATGCAGAGAGCAGTACAGGC...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTTTATTTTGGGGTCTTaGGGCCTGTACTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYFILGS*GLYCSL
Trigger: CAGAGAGCAGTACAGGCCCCAAGACCCCAAAATAAA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATAGTTTCCCAGAAGCATaGAATGCTGCAGTTTTGCTG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYSFPEA*NAAVLL
Trigger: CAGCAAAACTGCAGCATTTCATGCTTCTGGGAAACT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTAGGGAATGCTTTGGATaGGGACTGTCCTTGTTATCT +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFRECFG*GLSLLS
Trigger: AGATAACAAGGACAGTCCTCATCCAAAGCATTCCCT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTACCTCCAGGTTTACTTaGTCCCATTTCTTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFTSRFT*SHFFLA
Trigger: AGCCAAGAAGAAATGGGAGCAAGTAAACCTGGAGGT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTACTCTGGGACTGGAGTaGAATTCCTTCCTGAATTTC +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFTLGLE*NSFLNF
Trigger: GAAATTCAGGAAGGAATTCCACTCCAGTCCCAGAGT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATGGCTTCTTCACTGGCTaGACATCATTCATTGAAGAG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYGFFTG*TSFIEE
Trigger: CTCTTCAATGAATGATGTCCAGCCAGTGAAGAAGCC...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATATGGTGGATGGGTCGTaGTATATTTTCCTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYMVDGS*YIFLRF
Trigger: AAACCTCAGGAAAATATATCACGACCCATCCACCAT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTCCCAGAAGCATGAAATaGTGCAGTTTTGCTGCATTT +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFPRSMK*CSFAAF
Trigger: AAATGCAGCAAAACTGCAGCATTTCATGCTTCTGGG...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTAAATATGACCCTCTGTaGAACATAACAGTCACCTCC +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFKYDPL*NITVTS
Trigger: GGAGGTGACTGTTATGTTCCACAGAGGGTCATATTT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTTTCTTTCTGTAGTGTaGTATTGCTACTTGGTGGCA +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYFLSVV*YCYLVA
Trigger: TGCCACCAAGTAGCAATATCACACTACAGAAAGAAA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATAGTGGAATTCCTTCCTaGATTTCTTTCTGTAGTGTG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYSGIPS*ISFCSV
Trigger: CACACTACAGAAAGAAATTCAGGAAGGAATTCCACT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTGAAATGCTGCAGTTTTaGTGCATTTCCATGTGTCTA +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFEMLQF*CISMCL
Trigger: TAGACACATGGAAATGCAGCAAAACTGCAGCATTTC...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATAACGTGGATATAGGATaGATTCTCCGCATTTCGATT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYNVDIG*ILRISI
Trigger: AATCGAAATGCGGAGAATGCATCCTATATCCACGTT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATCTAAAGGATGGTGGATaGGTCGTGATATATTTTCCT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYLKDGG*VVIYFP
Trigger: AGGAAAATATATCACGACCCATCCACCATCCTTTAG...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATGCTCCCATTTCTTCTTaGCTCTGGATATATCTTTTC +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYAPISS*LWIYLF
Trigger: GAAAAGATATATCCAGAGCCAAGAAGAAATGGGAGC...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR TCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTGGTTTCCCATGCAATaGTGTTTTTATTTCACCTTG +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYWFPMQ*CFYFTL
Trigger: CAAGGTGAAATAAAAACATCATTGCATGGGAAACCA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTATGCTGCAGTTTTGCTaGATTTCCATGTGTCTAAAT +
Preference number: 4 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFMLQFC*ISMCLN
Trigger: ATTTAGACACATGGAAATGCAGCAAAACTGCAGCAT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR GCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATCTTCTTGCAATTCACTaGCATTTTCCAAAGGCTTTT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYLLAIH*HFPKAF
Trigger: AAAAGCCTTTGGAAAATGGCAGTGAATTGCAAGAAG...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATAAAACTAAAGGATGGTaGATGGGTCGTGATATATTT +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYKTKGW*MGRDIF
Trigger: AAATATATCACGACCCATCCACCATCCTTTAGTTTT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CCA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATTTTAAAACTAAAGGATaGTGGATGGGTCGTGATATA +
Preference number: 4 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYFKTKG*WMGRDI
Trigger: TATATCACGACCCATCCACCATCCTTTAGTTTTAAA...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS TCA 90 bp CATGCGTGGGCCTGCTGCGGGAAGGTGCATTCAACGCGACAGTCCTaGCAGCATCTCTTTGAACGTGGATATAGGATGCATTCTCCGCAT +
Preference number: 5 (lower is better)
Translates to: HAWACCGKVHSTRQS*QHLFERGYRMHSPH
Trigger: ATGCGGAGAATGCATCCTATATCCACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCTTCCCGCAGCAGGCCCACGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS CCA 90 bp TCTTCACAGTGTCGGAATCGGCACTGGGAACCAGTTCCACATGGCTaGGGAGGCCTCAGAATCATGGCAGGAGGTGAAAGGCACTTCTTA +
Preference number: 5 (lower is better)
Translates to: SSQCRNRHWEPVPHG*GGLRIMAGGERHFL
Trigger: TAAGAAGTGCCTTTCACCTCCTGCCATGATTCTGAGGCCTCCCCAGCCATGTGGAACTGGTTCCCAGTGCCGATTCCGACACTGTGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS GCA 90 bp ATGGACTTTATTGTAGGACCCATGCGTGGGCCTGCTGCGGGAAGGTaGATTCAACGCGACAGTCCTGACAGCATCTCTTTGAACGTGGAT +
Preference number: 5 (lower is better)
Translates to: MDFIVGPMRGPAAGR*IQRDSPDSISLNVD
Trigger: ATCCACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCTTCCCGCAGCAGGCCCACGCATGGGTCCTACAATAAAGTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS TCA 90 bp TGGCTGCTACCCGTCAGAGCAGGAGTCCAGTTTATAACCGTGAGTTaGTCCTGTGCCTCTCCCCTGATGAGGATTTGTGTTTCTGCCAGA +
Preference number: 5 (lower is better)
Translates to: WLLPVRAGVQFITVS*SCASPLMRICVSAR
Trigger: TCTGGCAGAAACACAAATCCTCATCAGGGGAGAGGCACAGGATCAACTCACGGTTATAAACTGGACTCCTGCTCTGACGGGTAGCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS GCA 90 bp GATCTAAACATTTCCTCTCTCTCCATAATGAGCACACAGTGTCACTaGCAAGGGCCTCTTCACAGTGTCGGAATCGGCACTGGGAACCCT +
Preference number: 5 (lower is better)
Translates to: DLNISSLSIMSTQCH*QGPLHSVGIGTGNP
Trigger: AGGGTTCCCAGTGCCGATTCCGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATTATGGAGAGAGAGGAAATGTTTAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS GCA 90 bp GATCTAAACATTTCCTCTCTCTCCATAATGAGCACACAGTGTCACTaGCAAGGGCCTCTTCACAGTGTCGGAATCGGCACTGGGAACCAT +
Preference number: 5 (lower is better)
Translates to: DLNISSLSIMSTQCH*QGPLHSVGIGTGNH
Trigger: ATGGTTCCCAGTGCCGATTCCGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATTATGGAGAGAGAGGAAATGTTTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551163.2
CDS TCA 90 bp GTCGGAATCGGCACTGGGAACCCTTCTCTAGCTTTGCAGAAACGCTaGAAGTGGTTGCTAGTAAGCACACAAACTCAAACTTCTAGAATT +
Preference number: 5 (lower is better)
Translates to: VGIGTGNPSLALQKR*KWLLVSTQTQTSRI
Trigger: AATTCTAGAAGTTTGAGTTTGTGTGCTTACTAGCAACCACTTTCAGCGTTTCTGCAAAGCTAGAGAAGGGTTCCCAGTGCCGATTCCGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550553.5
CDS TCA 90 bp AGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTaGACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATT +
Preference number: 5 (lower is better)
Translates to: SSRSLRNRHTDFHNG*TSLQSHQQCKSVPI
Trigger: AATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS-3UTR CAA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATGGACTGAGGTTGGGTTaGGGTTCCCTGTTAGCATGG +
Preference number: 5 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYGLRLG*GSLLAW
Trigger: CCATGCTAACAGGGAACCCAAACCCAACCTCAGTCC...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS CCA 90 bp ACCGACCTCACTGCCCCAGATAGCCGAAGCATTTATATCCTCACCTaGTCCTTAAATACTTATTTTTCTCTGACATATCTACATTTCTGC +
Preference number: 5 (lower is better)
Translates to: TDLTAPDSRSIYILT*SLNTYFSLTYLHFC
Trigger: GCAGAAATGTAGATATGTCAGAGAAAAATAAGTATTTAAGGACCAGGTGAGGATATAAATGCTTCGGCTATCTGGGGCAGTGAGGTCGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS-3UTR CAA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATAGGTTTCAGAGGTTCTaGACTCTGGGACTGGAGTGG +
Preference number: 5 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYRFQRF*TLGLEW
Trigger: CCACTCCAGTCCCAGAGTCAAGAACCTCTGAAACCT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTGCTGGACATCATTCATaGAAGAGGGGTCCTCTCTGC +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFAGHHS*KRGPLC
Trigger: GCAGAGAGGACCCCTCTTCAATGAATGATGTCCAGC...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTTGTCTGGACTGAGGTaGGGTTTGGGTTCCCTGTTA +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFLSGLR*GLGSLL
Trigger: TAACAGGGAACCCAAACCCAACCTCAGTCCAGACAA...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTCCTGACAGCATCTCTTaGAACGTGGATATAGGATGC +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFPDSIS*NVDIGC
Trigger: GCATCCTATATCCACGTTCAAAGAGATGCTGTCAGG...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTAACCTCCAGGTTTACTaGCTCCCATTTCTTCTTGGC +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFNLQVY*LPFLLG
Trigger: GCCAAGAAGAAATGGGAGCAAGTAAACCTGGAGGTT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS CCA 90 bp GAAGAGAGGTGGATAACATTCTTCCCTCTTTTGACACATGTTCCATaGTTGTTCTTTATCTTTTATCTCTCTCCTACTTCCATCTTCACT +
Preference number: 5 (lower is better)
Translates to: EERWITFFPLLTHVP*LFFIFYLSPTSIFT
Trigger: AGTGAAGATGGAAGTAGGAGAGAGATAAAAGATAAAGAACAACCATGGAACATGTGTCAAAAGAGGGAAGAATGTTATCCACCTCTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000551163.2
CDS-3UTR CAA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATCAGCAATGTCAGTCTTaGGTTTCCCATGCAATGATG +
Preference number: 5 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYQQCQS*VSHAMM
Trigger: CATCATTGCATGGGAAACCAAAGACTGACATTGCTG...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTGATGTTGACGTATATTaGTCTGGACTGAGGTTGGGT +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFDVDVY*SGLRLG
Trigger: ACCCAACCTCAGTCCAGACAAATATACGTCAACATC...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTACCTTGCCTTTCATATaGGCTAAGTTTTGTCGGAAC +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFTLPFI*AKFCRN
Trigger: GTTCCGACAAAACTTAGCCAATATGAAAGGCAAGGT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTAAGACTATCTCCTTCTaGCAATTCACTGCCATTTTC +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFKTISF*QFTAIF
Trigger: GAAAATGGCAGTGAATTGCAAGAAGGAGATAGTCTT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTTCTGTAGTGTGATATaGCTACTTGGTGGCAAAAAT +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFFCSVI*LLGGKN
Trigger: ATTTTTGCCACCAAGTAGCAATATCACACTACAGAA...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
36% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp GAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTTATACTAGAAGCATCATTTaGTTCATCTACTTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: EFQTYINTLAAVGNLHFYTRSII*FIYFLF
Trigger: GAAGAGGAAGTAGATGAACAAAATGATGCTTCTAGT...ATAAAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS-3UTR CAA 90 bp AATGAATTCCAGACCTACATAAATACACTGGCAGCTGTTGGTAATTTGCATTTTATACACTGGCAGCTGTaGGTAATTTGCATTTTTATC +
Preference number: 5 (lower is better)
Translates to: NEFQTYINTLAAVGNLHFIHWQL*VICIFI
Trigger: GATAAAAATGCAAATTACCAACAGCTGCCAGTGTAT...AAAATGCAAATTACCAACAGCTGCCAGTGTATTTATGTAGGTCTGGAATTCATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298699.7
CDS CCA 72 bp CTGCCAAGGGCCTCTTCACAGTGTCGGAATCGGCACTaGGAACCAGTTCCACATGGCTGGGGAGGCCTCAGA +
Preference number: 6 (lower is better)
Translates to: LPRASSQCRNRH*EPVPHGWGGLR
Trigger: TCTGAGGCCTCCCCAGCCATGTGGAACTGGTTCCCAGTGCCGATTCCGACACTGTGAAGAGGCCCTTGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS CCA 72 bp TGTCGGAATCGGCACTGGGAACCAGTTCCACATGGCTaGGGAGGCCTCAGAATCATGGCAGGAGGTGAAAGG +
Preference number: 6 (lower is better)
Translates to: CRNRHWEPVPHG*GGLRIMAGGER
Trigger: CCTTTCACCTCCTGCCATGATTCTGAGGCCTCCCCAGCCATGTGGAACTGGTTCCCAGTGCCGATTCCGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS GCA 72 bp ATTGTAGGACCCATGCGTGGGCCTGCTGCGGGAAGGTaGATTCAACGCGACAGTCCTGACAGCATCTCTTTG +
Preference number: 6 (lower is better)
Translates to: IVGPMRGPAAGR*IQRDSPDSISL
Trigger: CAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCTTCCCGCAGCAGGCCCACGCATGGGTCCTACAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS TCA 72 bp GCCTGCTGCGGGAAGGTGCATTCAACGCGACAGTCCTaGCAGCATCTCTTTGAACGTGGATATAGGATGCAT +
Preference number: 6 (lower is better)
Translates to: ACCGKVHSTRQS*QHLFERGYRMH
Trigger: ATGCATCCTATATCCACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCTTCCCGCAGCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS CAA 90 bp ATGGCTGCTACCCGTCAGAGCAGGAGTCCAGTTTATAACCGTGAGTaGATCCTGTGCCTCTCCCCTGATGAGGATTTGTGTTTCTGCCAG +
Preference number: 6 (lower is better)
Translates to: MAATRQSRSPVYNRE*ILCLSPDEDLCFCQ
Trigger: CTGGCAGAAACACAAATCCTCATCAGGGGAGAGGCACAGGATCAACTCACGGTTATAAACTGGACTCCTGCTCTGACGGGTAGCAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS TCA 72 bp CCCGTCAGAGCAGGAGTCCAGTTTATAACCGTGAGTTaGTCCTGTGCCTCTCCCCTGATGAGGATTTGTGTT +
Preference number: 6 (lower is better)
Translates to: PVRAGVQFITVS*SCASPLMRICV
Trigger: AACACAAATCCTCATCAGGGGAGAGGCACAGGATCAACTCACGGTTATAAACTGGACTCCTGCTCTGACGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS GCA 72 bp ATTTCCTCTCTCTCCATAATGAGCACACAGTGTCACTaGCAAGGGCCTCTTCACAGTGTCGGAATCGGCACT +
Preference number: 6 (lower is better)
Translates to: ISSLSIMSTQCH*QGPLHSVGIGT
Trigger: AGTGCCGATTCCGACACTGTGAAGAGGCCCTTGGCAGTGACACTGTGTGCTCATTATGGAGAGAGAGGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551163.2
ENST00000551944.1
CDS CAA 72 bp GCTGGTGTGCTGCACCCATTAACTCGTCATTTAGCATaGGGATATCTCCTAATGCTATCCCTCCCCCTTCCC +
Preference number: 6 (lower is better)
Translates to: AGVLHPLTRHLA*GYLLMLSLPLP
Trigger: GGGAAGGGGGAGGGATAGCATTAGGAGATATCCCAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS CAA 72 bp ACCCGTCAGAGCAGGAGTCCAGTTTATAACCGTGAGTaGATCCTGTGCCTCTCCCCTGATGAGGATTTGTGT +
Preference number: 6 (lower is better)
Translates to: TRQSRSPVYNRE*ILCLSPDEDLC
Trigger: ACACAAATCCTCATCAGGGGAGAGGCACAGGATCAACTCACGGTTATAAACTGGACTCCTGCTCTGACGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS GCA 72 bp AGCAGGAGTCCAGTTTATAACCGTGAGTTGATCCTGTaGCTCTCCCCTGATGAGGATTTGTGTTTCTGCCAG +
Preference number: 6 (lower is better)
Translates to: SRSPVYNRELIL*LSPDEDLCFCQ
Trigger: CTGGCAGAAACACAAATCCTCATCAGGGGAGAGGCACAGGATCAACTCACGGTTATAAACTGGACTCCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS CAA 72 bp TTGGTGACCCTTCAGAATTATGAGAATCGGGCAAAGTaGATGGCTGCTACCCGTCAGAGCAGGAGTCCAGTT +
Preference number: 6 (lower is better)
Translates to: LVTLQNYENRAK*MAATRQSRSPV
Trigger: AACTGGACTCCTGCTCTGACGGGTAGCAGCCATCAACTTTGCCCGATTCTCATAATTCTGAAGGGTCACCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS CAA 90 bp AGCAACTCCTTGGTGACCCTTCAGAATTATGAGAATCGGGCAAAGTaGATGGCTGCTACCCGTCAGAGCAGGAGTCCAGTTTATAACCGT +
Preference number: 6 (lower is better)
Translates to: SNSLVTLQNYENRAK*MAATRQSRSPVYNR
Trigger: ACGGTTATAAACTGGACTCCTGCTCTGACGGGTAGCAGCCATCAACTTTGCCCGATTCTCATAATTCTGAAGGGTCACCAAGGAGTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS CAA 72 bp AGGTGCATTCAACGCGACAGTCCTGACAGCATCTCTTaGAACGTGGATATAGGATGCATTCTCCGCATTTCG +
Preference number: 6 (lower is better)
Translates to: RCIQRDSPDSIS*NVDIGCILRIS
Trigger: CGAAATGCGGAGAATGCATCCTATATCCACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS CAA 90 bp GCTGCGGGAAGGTGCATTCAACGCGACAGTCCTGACAGCATCTCTTaGAACGTGGATATAGGATGCATTCTCCGCATTTCGATTTTTATT +
Preference number: 6 (lower is better)
Translates to: AAGRCIQRDSPDSIS*NVDIGCILRISIFI
Trigger: AATAAAAATCGAAATGCGGAGAATGCATCCTATATCCACGTTCAAAGAGATGCTGTCAGGACTGTCGCGTTGAATGCACCTTCCCGCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS TCA 72 bp GGCACTGGGAACCCTTCTCTAGCTTTGCAGAAACGCTaGAAGTGGTTGCTAGTAAGCACACAAACTCAAACT +
Preference number: 6 (lower is better)
Translates to: GTGNPSLALQKR*KWLLVSTQTQT
Trigger: AGTTTGAGTTTGTGTGCTTACTAGCAACCACTTTCAGCGTTTCTGCAAAGCTAGAGAAGGGTTCCCAGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298699.7
ENST00000550553.5
CDS TCA 72 bp ACATGGCTGGGGAGGCCTCAGAATCATGGCAGGAGGTaGAAGGCACTTCTTACACTTCTCTACCTTTTTAAA +
Preference number: 6 (lower is better)
Translates to: TWLGRPQNHGRR*KALLTLLYLFK
Trigger: TTTAAAAAGGTAGAGAAGTGTAAGAAGTGCCTTTCACCTCCTGCCATGATTCTGAGGCCTCCCCAGCCATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS CAA 72 bp AAACCACATCAACAAAGGACCTCACCTGGACTGAGGTaGGGTTTGGGTTCCCTGTTAGCATGGACTTTATTG +
Preference number: 6 (lower is better)
Translates to: KPHQQRTSPGLR*GLGSLLAWTLL
Trigger: CAATAAAGTCCATGCTAACAGGGAACCCAAACCCAACCTCAGTCCAGGTGAGGTCCTTTGTTGATGTGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS CAA 72 bp GACACCACTTTAAGTACAGTGGCTGGTAGCAACTCCTaGGTGACCCTTCAGAATTATGAGAATCGGGCAAAG +
Preference number: 6 (lower is better)
Translates to: DTTLSTVAGSNS*VTLQNYENRAK
Trigger: CTTTGCCCGATTCTCATAATTCTGAAGGGTCACCAAGGAGTTGCTACCAGCCACTGTACTTAAAGTGGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546547.1
CDS TCA 72 bp AACTATGAGGTACAGCCCAAGTCCCATGTCCTTCCATaGAGTGACTTCCATGTTCGCAGTAATTGGTGTGAT +
Preference number: 6 (lower is better)
Translates to: NYEVQPKSHVLP*SDFHVRSNWCD
Trigger: ATCACACCAATTACTGCGAACATGGAAGTCACTTCATGGAAGGACATGGGACTTGGGCTGTACCTCATAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS GCA 72 bp ACTGGTGTGAGATGGTATCTCGTTGTGGTTTTGATTTaGATTTCTCTGATGGCCAGTGATGATGAGCATTTT +
Preference number: 6 (lower is better)
Translates to: TGVRWYLVVVLI*ISLMASDDEHF
Trigger: AAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAACGAGATACCATCTCACACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS CCA 72 bp TTCACTTTCATCGACTCCAAGAAATATGACCCTCTGTaGAACATAACAGTCACCTCCTCCATTTTCAAAAGC +
Preference number: 6 (lower is better)
Translates to: FTFIDSKKYDPL*NITVTSSIFKS
Trigger: GCTTTTGAAAATGGAGGAGGTGACTGTTATGTTCCACAGAGGGTCATATTTCTTGGAGTCGATGAAAGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298699.7
ENST00000550553.5
ENST00000551944.1
CDS CCA 72 bp ACTGCCCCAGATAGCCGAAGCATTTATATCCTCACCTaGTCCTTAAATACTTATTTTTCTCTGACATATCTA +
Preference number: 6 (lower is better)
Translates to: TAPDSRSIYILT*SLNTYFSLTYL
Trigger: TAGATATGTCAGAGAAAAATAAGTATTTAAGGACCAGGTGAGGATATAAATGCTTCGGCTATCTGGGGCAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000551944.1
CDS CAA 72 bp TTTCTCATTTTTCTCTCTCTCAACCTCCAGGTTTACTaGCTCCCATTTCTTCTTGGCTCTGGATATATCTTT +
Preference number: 6 (lower is better)
Translates to: FLIFLSLNLQVY*LPFLLGSGYIF
Trigger: AAAGATATATCCAGAGCCAAGAAGAAATGGGAGCAAGTAAACCTGGAGGTTGAGAGAGAGAAAAATGAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298699.7
ENST00000550553.5