RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTBD18 (Homo sapiens)

Ensembl gene IDs: ENSG00000233436

Ensembl transcript IDs: ENST00000422652.5, ENST00000436147.3, ENST00000527995.1

Found 209 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTAGACTTCCTAATACTGGCAGTGAATAAGCCCCACGTTGGGTGCTaGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACA +
Preference number: 1 (lower is better)
Translates to: LDFLILAVNKPHVGC*TASITPTHLVFHPT
Trigger: TGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCCAACGTGGGGCTTATTCACTGCCAGTATTAGGAAGTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR-3UTR CCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCCCTTGGCTTCTGCCTaGCTTCTGAGGCTTAGGGAA +
Preference number: 2 (lower is better)
Translates to: GCWTASITPTHLVFHPTLPLASA*LLRLRE
Trigger: TTCCCTAAGCCTCAGAAGCCAGGCAGAAGCCAAGGG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTACCTGCCTCTTGTGCTaGGGGCACGTGCCAGCTTCT +
Preference number: 2 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLTCLLC*GHVPAS
Trigger: AGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGT...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCTTGGCTGTTACCTATaGCCCACCAGAATTGGGGAG +
Preference number: 2 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYLGCYL*PTRIGE
Trigger: CTCCCCAATTCTGGTGGGTCATAGGTAACAGCCAAG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR TCA 72 bp ACCTACAAAGAGCCAGGGTACACCTGCCTCTTGTGCTaGGGGCACGTGCCAGCTTCTCTGCCAGTAAGCCTT +
Preference number: 3 (lower is better)
Translates to: TYKEPGYTCLLC*GHVPASLPVSL
Trigger: AAGGCTTACTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCTCTTTGTAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR CCA 72 bp CTAATACTGGCAGTGAATAAGCCCCACGTTGGGTGCTaGACAGCATCCATCACTCCCACCCACTTAGTATTC +
Preference number: 3 (lower is better)
Translates to: LILAVNKPHVGC*TASITPTHLVF
Trigger: GAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCCAACGTGGGGCTTATTCACTGCCAGTATTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR-3UTR CAA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTTGGGGAGCACACAGTTaGTTTCAGTTGTCACTAACC +
Preference number: 3 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLWGAHS*FQLSLT
Trigger: GGTTAGTGACAACTGAAACAAACTGTGTGCTCCCCA...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
3UTR-3UTR CAA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACTATGACCCACCAGAATaGGGGAGCACACAGTTTGTT +
Preference number: 3 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYYDPPE*GSTQFV
Trigger: AACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATA...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGCTCCAGGCGCTCTGTaGAGAAGGGGCTACAAGCTG +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQAPGAL*RRGYKL
Trigger: CAGCTTGTAGCCCCTTCTTCACAGAGCGCCTGGAGC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGAAGGGGCTACAAGCTaGCAGGATGCAGCAGTGAGC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQEGATS*QDAAVS
Trigger: GCTCACTGCTGCATCCTGTCAGCTTGTAGCCCCTTC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCTTCCCACCCTGAGCTaGCCTCTCCCGCTCCAGGCG +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLLPTLS*PLPLQA
Trigger: CGCCTGGAGCGGGAGAGGCCAGCTCAGGGTGGGAAG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGTGTCGGTTGTTTTCCTaGGGCCCCTCTTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQCRLFS*GPSSFP
Trigger: GGGGAAGGAAGAGGGGCCCCAGGAAAACAACCGACA...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGGGGTACAAGCTGGGTaGGGAGAGCACTGTAGGATC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQGVQAG*GEHCRI
Trigger: GATCCTACAGTGCTCTCCCCACCCAGCTTGTACCCC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCTCTGGCCTTCCTCTTaGGCAGAAGAGTGCCAGACA +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLWPSS*AEECQT
Trigger: TGTCTGGCACTCTTCTGCTCAAGAGGAAGGCCAGAG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCTCCTCTGCAGAGTCTaGGTTAGGTGCCCTGACTTC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLLCRV*VRCPDF
Trigger: GAAGTCAGGGCACCTAACTCAGACTCTGCAGAGGAG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGTGGCAGCAGCACTTGTaGTTCGGTACTCCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQWQQHL*FGTPQP
Trigger: AGGCTGAGGAGTACCGAATCACAAGTGCTGCTGCCA...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGCTAAGGAGCTCAGTTaGCCCTCTGTTCTCACCAGC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQAKELS*PSVLTS
Trigger: GCTGGTGAGAACAGAGGGCCAACTGAGCTCCTTAGC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCCCTTGGCTTCTGCCTaGCTTCTGAGGCTTAGGGAA +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQPLASA*LLRLRE
Trigger: TTCCCTAAGCCTCAGAAGCCAGGCAGAAGCCAAGGG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGTTTCCACCCTCAAGCTaGAGGGATTCCAGCTCAGAC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQFPPSS*RDSSSD
Trigger: GTCTGAGCTGGAATCCCTTCAGCTTGAGGGTGGAAA...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGACTGGACTCAAACTCTaGCTTCACCACTGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQTGLKL*LHHWVV
Trigger: GACCACCCAGTGGTGAAGTCAGAGTTTGAGTCCAGT...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGCCTCACCTTCTGCCTaGAGAAGGACATCACAGAAC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQASPSA*RRTSQN
Trigger: GTTCTGTGATGTCCTTCTGCAGGCAGAAGGTGAGGC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGTTATTTACACTCCTCTaGCGCCAAAGACGCCGGCCA +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLFTLL*RQRRRP
Trigger: TGGCCGGCGTCTTTGGCGGCAGAGGAGTGTAAATAA...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGAGGACTAGCTCTGCCTaGTTTTGGCTTGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQRTSSA*FWLVLW
Trigger: CCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCT...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGACCTGCCTCTTGTGCTaGGGGCACGTGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLTCLLC*GHVPAS
Trigger: AGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGT...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCTTCCTCTTCAGAGCTaGCAGGAAGTGAGCCTAGTA +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLPLQS*QEVSLV
Trigger: TACTAGGCTCACTTCCTGCCAGCTCTGAAGAGGAAG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTGCTCCAGGCGCTCTGTaGAGAAGGGGCTACAAGCTG +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPAPGAL*RRGYKL
Trigger: CAGCTTGTAGCCCCTTCTTCACAGAGCGCCTGGAGC...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGTCAGACACACGGAGCTaGCGGGCAGCAGATAGCACA +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLSDTRS*RAADST
Trigger: TGTGCTATCTGCTGCCCGTCAGCTCCGTGTGTCTGA...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGATCTGGGGGCTATCTTaGGTGTTTTTGAGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQIWGLS*VFLRGV
Trigger: GACTCCTCTCAAAAACACTCAAGATAGCCCCCAGAT...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCAGGGCTCCGCTTCCTaGTCCCACCTGTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPQGSAS*SHLSFP
Trigger: TGGGAAAGACAGGTGGGAGCAGGAAGCGGAGCCCTG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCACCACTGGGTGGTCTaGGGAGTGGCTAGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPHHWVV*GVASRD
Trigger: GTCTCTGCTAGCCACTCCCCAGACCACCCAGTGGTG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCCCCACGTTGGGTGCTaGACAGCATCCATCACTCCC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPPHVGC*TASITP
Trigger: GGGAGTGATGGATGCTGTCCAGCACCCAACGTGGGG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCTTCTGCCTGGCTTCTaGGGCTTAGGGAAGGGAGGA +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPLLPGF*GLGKGG
Trigger: TCCTCCCTTCCCTAAGCCTCAGAAGCCAGGCAGAAG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTGCAGTGAGCTGGAACTaGCTCACCTTCTGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPAVSWN*LTFCLQ
Trigger: CTGCAGGCAGAAGGTGAGGCAGTTCCAGCTCACTGC...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGTAGGTGACATTTCCTaGTCATTACTGGAGAATGGC +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQVGDIS*SLLENG
Trigger: GCCATTCTCCAGTAATGAGCAGGAAATGTCACCTAC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCAGACCAGATGGGTTTaGGGTGCTCTGCAGAGGACT +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLQTRWV*GALQRT
Trigger: AGTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTGTCTCCTCCGGGATCTaGGATCTGGGGGCTATCTTG +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPVSSGI*DLGAIL
Trigger: CAAGATAGCCCCCAGATCCCAGATCCCGGAGGAGAC...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTGCAGAAAAGCTAACCTaGGGAACCGGGGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPAEKLT*GTGGSC
Trigger: ACAGGAACCCCCGGTTCCTCAGGTTAGCTTTTCTGC...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGTTTCCACCCTCAAGCTaGAGGGATTCCAGCTCAGAC +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLFPPSS*RDSSSD
Trigger: GTCTGAGCTGGAATCCCTTCAGCTTGAGGGTGGAAA...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCCAACGGCCTCCTACTaGAAGCACTTCACTCACCTC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPPTASY*KHFTHL
Trigger: GAGGTGAGTGAAGTGCTTTCAGTAGGAGGCCGTTGG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGAGAAGTTTGTCTTCCTaGCCATCCAGTGGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLRSLSS*PSSGWE
Trigger: CTCCCAGCCACTGGATGGTCAGGAAGACAAACTTCT...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCTTTCCCAGACCAGATaGGTTTGGGGTGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPLSQTR*VWGALQ
Trigger: CTGCAGAGCACCCCAAACCCATCTGGTCTGGGAAAG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGTTACTGGAGAATGGCTaGGTTCCTGAAGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLLLENG*VPEGSW
Trigger: CCAAGAGCCTTCAGGAACTCAGCCATTCTCCAGTAA...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGTTCTGTTCTAGTAGGTaGCATTTCCTGCTCATTACT +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQFCSSR*HFLLIT
Trigger: AGTAATGAGCAGGAAATGTCACCTACTAGAACAGAA...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTACTGGACTCAAACTCTaGCTTCACCACTGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPTGLKL*LHHWVV
Trigger: GACCACCCAGTGGTGAAGTCAGAGTTTGAGTCCAGT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGAGGTGGTTCAATGTCTaGGCCACAGAGCATGAAGTC +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLRWFNV*ATEHEV
Trigger: GACTTCATGCTCTGTGGCTCAGACATTGAACCACCT...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGATAATAGTATGAGTTaGGGAAACATCAGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQDNSMS*GNISPE
Trigger: TTCTGGGCTGATGTTTCCTCAACTCATACTATTATC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436147.3
CDS-3UTR CCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCTTCCCACCCTGAGCTaGCCTCTCCCGCTCCAGGCG +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYLPTLS*PLPLQA
Trigger: CGCCTGGAGCGGGAGAGGCCAGCTCAGGGTGGGAAG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCACTCTGGCAGAGATTaGTGCAGCACTTGTTGGTTG +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLHSGRD*CSTCWL
Trigger: CAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTAGGACTAGCTCTGCCTaGTTTTGGCTTGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPRTSSA*FWLVLW
Trigger: CCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTAGGTGGTTCAATGTCTaGGCCACAGAGCATGAAGTC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPRWFNV*ATEHEV
Trigger: GACTTCATGCTCTGTGGCTCAGACATTGAACCACCT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCCTAGTAGTTCAGAGTaGCCAGATACCTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPPSSSE*PDTSLP
Trigger: AGGCAAGGAGGTATCTGGTCACTCTGAACTACTAGG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTTACAAGCTGACAGGATaGAGCAGTGAGCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPYKLTG*SSELEL
Trigger: CAGTTCCAGCTCACTGCTGCATCCTGTCAGCTTGTA...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGTATTCCACCCAACACTaGTTCACACCTTCCTCTGGA +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLYSTQH*FTPSSG
Trigger: TCCAGAGGAAGGTGTGAAGCAGTGTTGGGTGGAATA...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTTTTTTCTTGTGGAGTTaGGCAGGCTCTGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPFFLWS*AGSGLP
Trigger: AGGAAGGCCAGAGCCTGCCCAACTCCACAAGAAAAA...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGATCCACTTAAAATGCTaGAAGGCTTTGATGTACAGA +
Preference number: 4 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQIHLKC*KALMYR
Trigger: TCTGTACATCAAAGCCTTCCAGCATTTTAAGTGGAT...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTAGCTCTGCCTGGTTTTaGCTTGTCCTCTGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPSSAWF*LVLWCF
Trigger: GAAACACCAGAGGACAAGCCAAAACCAGGCAGAGCT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCTTCCTCTTCAGAGCTaGCAGGAAGTGAGCCTAGTA +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPLPLQS*QEVSLV
Trigger: TACTAGGCTCACTTCCTGCCAGCTCTGAAGAGGAAG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACGAAGGGGCTACAAGCTaGCAGGATGCAGCAGTGAGC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNEGATS*QDAAVS
Trigger: GCTCACTGCTGCATCCTGTCAGCTTGTAGCCCCTTC...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTCAGACACACGGAGCTaGCGGGCAGCAGATAGCACA +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNSDTRS*RAADST
Trigger: TGTGCTATCTGCTGCCCGTCAGCTCCGTGTGTCTGA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACGCAGTGAGCTGGAACTaGCTCACCTTCTGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNAVSWN*LTFCLQ
Trigger: CTGCAGGCAGAAGGTGAGGCAGTTCCAGCTCACTGC...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCAGGGCTCCGCTTCCTaGTCCCACCTGTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLQGSAS*SHLSFP
Trigger: TGGGAAAGACAGGTGGGAGCAGGAAGCGGAGCCCTG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGAGCACAGTGAGTGCCTaGCACAAAATAACTACCAAG +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLSTVSA*HKITTK
Trigger: CTTGGTAGTTATTTTGTGCCAGGCACTCACTGTGCT...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422652.5
CDS-3UTR CCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCAGCCTTCGGCCCTGTaGGGCCTTCACCAACTTTCC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLQPSAL*GLHQLS
Trigger: GGAAAGTTGGTGAAGGCCCCACAGGGCCGAAGGCTG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTGTCGGTTGTTTTCCTaGGGCCCCTCTTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNCRLFS*GPSSFP
Trigger: GGGGAAGGAAGAGGGGCCCCAGGAAAACAACCGACA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCACCACTGGGTGGTCTaGGGAGTGGCTAGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLHHWVV*GVASRD
Trigger: GTCTCTGCTAGCCACTCCCCAGACCACCCAGTGGTG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCCTCCTTGCCTGCCTTaGGAGAAGGGTATAATAACT +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPPPCLP*EKGIIT
Trigger: AGTTATTATACCCTTCTCCCAAGGCAGGCAAGGAGG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCCCCACGTTGGGTGCTaGACAGCATCCATCACTCCC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLPHVGC*TASITP
Trigger: GGGAGTGATGGATGCTGTCCAGCACCCAACGTGGGG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCTTCTGCCTGGCTTCTaGGGCTTAGGGAAGGGAGGA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLLLPGF*GLGKGG
Trigger: TCCTCCCTTCCCTAAGCCTCAGAAGCCAGGCAGAAG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTGGGTTTGGGGTGCTCTaGAGAGGACTAGCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLGFGVL*RGLALP
Trigger: AGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCC...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTGGGGTACAAGCTGGGTaGGGAGAGCACTGTAGGATC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLGVQAG*GEHCRI
Trigger: GATCCTACAGTGCTCTCCCCACCCAGCTTGTACCCC...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACCAGACCAGATGGGTTTaGGGTGCTCTGCAGAGGACT +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNQTRWV*GALQRT
Trigger: AGTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTG...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTATGACCCACCAGAATTaGGGAGCACACAGTTTGTTT +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPMTHQN*GAHSLF
Trigger: AAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCAT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCAACTGCTACAATGCTaGCTACTTATATTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: GCWTASITPTHLVFHPTLQLLQC*LLIFFL
Trigger: CAGGAAGAATATAAGTAGTCAGCATTGTAGCAGTTG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422652.5
CDS-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACGACAGGATGCAGCAGTaGGCTGGAACTGCCTCACCT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYDRMQQ*AGTASP
Trigger: AGGTGAGGCAGTTCCAGCTCACTGCTGCATCCTGTC...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCTCTGGCCTTCCTCTTaGGCAGAAGAGTGCCAGACA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLLWPSS*AEECQT
Trigger: TGTCTGGCACTCTTCTGCTCAAGAGGAAGGCCAGAG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACACCAGGAGATGGCTTTaGGCGACTGAGCCTGATCTT +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNTRRWL*ATEPDL
Trigger: AAGATCAGGCTCAGTCGCTCAAAGCCATCTCCTGGT...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCTCCTCTGCAGAGTCTaGGTTAGGTGCCCTGACTTC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLLLCRV*VRCPDF
Trigger: GAAGTCAGGGCACCTAACTCAGACTCTGCAGAGGAG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCTGAGCCACAGAGCATaGAGTCCAGGATCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLLSHRA*SPGSPP
Trigger: TGGAGGAGATCCTGGACTTCATGCTCTGTGGCTCAG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACGCCTCACCTTCTGCCTaGAGAAGGACATCACAGAAC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNASPSA*RRTSQN
Trigger: GTTCTGTGATGTCCTTCTGCAGGCAGAAGGTGAGGC...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACGGGTTTGGGGTGCTCTaGAGAGGACTAGCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYGFGVL*RGLALP
Trigger: AGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCC...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTGACCAGATACCTCCTTaGCTGCCTTGGGAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLDQIPP*LPWEKG
Trigger: ACCCTTCTCCCAAGGCAGGCAAGGAGGTATCTGGTC...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCTTTCCCAGACCAGATaGGTTTGGGGTGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLLSQTR*VWGALQ
Trigger: CTGCAGAGCACCCCAAACCCATCTGGTCTGGGAAAG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTAGATACTTCCATTTCTaGGGTATACAAGAAGTCCAC +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPRYFHF*GIQEVH
Trigger: GTGGACTTCTTGTATACCTCAGAAATGGAAGTATCT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTAGAGGACAAGGAGTTTaGTTAGTGGGCAGTGGGGTG +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLRGQGV*LVGSGV
Trigger: CACCCCACTGCCCACTAATCAAACTCCTTGTCCTCT...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTTATCTTGAGTGTTTTTaGGAGGAGTCTCTTGTACCA +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPYLECF*EESLVP
Trigger: TGGTACAAGAGACTCCTCTCAAAAACACTCAAGATA...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACCACATGGGGGAGTCCTaGCACAGTTCTGTTCTAGTA +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNHMGES*HSSVLV
Trigger: TACTAGAACAGAACTGTGTCAGGACTCCCCCATGTG...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCTGAGCCACAGAGCATaGAGTCCAGGATCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYLSHRA*SPGSPP
Trigger: TGGAGGAGATCCTGGACTTCATGCTCTGTGGCTCAG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCCTTTTCCAATTCTGTaGGCTCCCTGGGCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLPFPIL*APWARV
Trigger: AACTCTGGCCCAGGGAGCTCACAGAATTGGAAAAGG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTACAAGCTGACAGGATaGAGCAGTGAGCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNYKLTG*SSELEL
Trigger: CAGTTCCAGCTCACTGCTGCATCCTGTCAGCTTGTA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTTCCTGACCATCCAGTaGCTGGGAGCTGGTAATTTC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNFLTIQ*LGAGNF
Trigger: GAAATTACCAGCTCCCAGCCACTGGATGGTCAGGAA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTACTTATATTCTTCCTaGGCACCACATCCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNYLYSS*APHPSS
Trigger: GGAGCTGGGATGTGGTGCTCAGGAAGAATATAAGTA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422652.5
CDS-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACACCAGGAGATGGCTTTaGGCGACTGAGCCTGATCTT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYTRRWL*ATEPDL
Trigger: AAGATCAGGCTCAGTCGCTCAAAGCCATCTCCTGGT...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACATCTGGGGGCTATCTTaGGTGTTTTTGAGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNIWGLS*VFLRGV
Trigger: GACTCCTCTCAAAAACACTCAAGATAGCCCCCAGAT...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCCTTTTCCAATTCTGTaGGCTCCCTGGGCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYPFPIL*APWARV
Trigger: AACTCTGGCCCAGGGAGCTCACAGAATTGGAAAAGG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACAGAAGTTTGTCTTCCTaGCCATCCAGTGGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYRSLSS*PSSGWE
Trigger: CTCCCAGCCACTGGATGGTCAGGAAGACAAACTTCT...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTAACTGCCTCACCTTCTaGCTGCAGAAGGACATCACA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLNCLTF*LQKDIT
Trigger: TGTGATGTCCTTCTGCAGGCAGAAGGTGAGGCAGTT...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCCTAGTAGTTCAGAGTaGCCAGATACCTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYPSSSE*PDTSLP
Trigger: AGGCAAGGAGGTATCTGGTCACTCTGAACTACTAGG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACAACTGCCTCACCTTCTaGCTGCAGAAGGACATCACA +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYNCLTF*LQKDIT
Trigger: TGTGATGTCCTTCTGCAGGCAGAAGGTGAGGCAGTT...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTCAGAGCTGTGTCAAATaGATAGGGTTCTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLQSCVK*IGFSAV
Trigger: GACTGCAGAGAACCCTATGCATTTGACACAGCTCTG...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCGTCTCCTCCGGGATCTaGGATCTGGGGGCTATCTTG +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAVSSGI*DLGAIL
Trigger: CAAGATAGCCCCCAGATCCCAGATCCCGGAGGAGAC...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACGGTAATTTCAAGGTCTaGTGTCCAACGGCCTCCTAC +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYGNFKV*CPTASY
Trigger: GTAGGAGGCCGTTGGACACCAGACCTTGAAATTACC...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACTTCCTGACCATCCAGTaGCTGGGAGCTGGTAATTTC +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYFLTIQ*LGAGNF
Trigger: GAAATTACCAGCTCCCAGCCACTGGATGGTCAGGAA...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACATGACCCACCAGAATTaGGGAGCACACAGTTTGTTT +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNMTHQN*GAHSLF
Trigger: AAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCAT...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCTTCACACCTTCCTCTaGAACATTTTCTTAAACAAT +
Preference number: 4 (lower is better)
Translates to: SLPVSLLLANISHPPKAPLHTFL*NIFLNN
Trigger: ATTGTTTAAGAAAATGTTCCAGAGGAAGGTGTGAAG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCTGGCAGCAGCACTTGTaGTTCGGTACTCCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAWQQHL*FGTPQP
Trigger: AGGCTGAGGAGTACCGAATCACAAGTGCTGCTGCCA...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACCCACTGAGACTCAACTaGTACAATGCTGACTACTTA +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNPLRLN*YNADYL
Trigger: TAAGTAGTCAGCATTGTAGCAGTTGAGTCTCAGTGG...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422652.5
CDS-3UTR GCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTGTAGGTGACATTTCCTaGTCATTACTGGAGAATGGC +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLVGDIS*SLLENG
Trigger: GCCATTCTCCAGTAATGAGCAGGAAATGTCACCTAC...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGAGCTGTGTCAAATaGATAGGGTTCTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYQSCVK*IGFSAV
Trigger: GACTGCAGAGAACCCTATGCATTTGACACAGCTCTG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCGACCAGATACCTCCTTaGCTGCCTTGGGAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASADQIPP*LPWEKG
Trigger: ACCCTTCTCCCAAGGCAGGCAAGGAGGTATCTGGTC...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR GCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACTATTCCACCCAACACTaGTTCACACCTTCCTCTGGA +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYYSTQH*FTPSSG
Trigger: TCCAGAGGAAGGTGTGAAGCAGTGTTGGGTGGAATA...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCGCTAAGGAGCTCAGTTaGCCCTCTGTTCTCACCAGC +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAAKELS*PSVLTS
Trigger: GCTGGTGAGAACAGAGGGCCAACTGAGCTCCTTAGC...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCCTCCTTGCCTGCCTTaGGAGAAGGGTATAATAACT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYPPCLP*EKGIIT
Trigger: AGTTATTATACCCTTCTCCCAAGGCAGGCAAGGAGG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACAGATACTTCCATTTCTaGGGTATACAAGAAGTCCAC +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNRYFHF*GIQEVH
Trigger: GTGGACTTCTTGTATACCTCAGAAATGGAAGTATCT...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTTCTGTTCTAGTAGGTaGCATTTCCTGCTCATTACT +
Preference number: 4 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNFCSSR*HFLLIT
Trigger: AGTAATGAGCAGGAAATGTCACCTACTAGAACAGAA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCCTTGGCTGTTACCTATaGCCCACCAGAATTGGGGAG +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASALGCYL*PTRIGE
Trigger: CTCCCCAATTCTGGTGGGTCATAGGTAACAGCCAAG...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTTATCTTGAGTGTTTTTaGGAGGAGTCTCTTGTACCA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLYLECF*EESLVP
Trigger: TGGTACAAGAGACTCCTCTCAAAAACACTCAAGATA...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCTTACTGGAGAATGGCTaGGTTCCTGAAGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASALLENG*VPEGSW
Trigger: CCAAGAGCCTTCAGGAACTCAGCCATTCTCCAGTAA...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCCACATGGGGGAGTCCTaGCACAGTTCTGTTCTAGTA +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAHMGES*HSSVLV
Trigger: TACTAGAACAGAACTGTGTCAGGACTCCCCCATGTG...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCGGTAATTTCAAGGTCTaGTGTCCAACGGCCTCCTAC +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAGNFKV*CPTASY
Trigger: GTAGGAGGCCGTTGGACACCAGACCTTGAAATTACC...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CCA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTATCCACTTAAAATGCTaGAAGGCTTTGATGTACAGA +
Preference number: 4 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLIHLKC*KALMYR
Trigger: TCTGTACATCAAAGCCTTCCAGCATTTTAAGTGGAT...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR TCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCCATTTCCATTACCACTaGGACTCAACTGCTACAATG +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAHFHYH*DSTATM
Trigger: CATTGTAGCAGTTGAGTCTCAGTGGTAATGGAAATG...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422652.5
CDS-3UTR TCA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCTCAGACTCCTGTAGGTaGGATAATACATTTCAGAGG +
Preference number: 4 (lower is better)
Translates to: NKMVQVHNFLSMVPLASASDSCR*DNTFQR
Trigger: CCTCTGAAATGTATTATCTCACCTACAGGAGTCTGA...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436147.3
CDS-3UTR CCA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCTTCACACCTTCCTCTaGAACATTTTCTTAAACAAT +
Preference number: 4 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYLHTFL*NIFLNN
Trigger: ATTGTTTAAGAAAATGTTCCAGAGGAAGGTGTGAAG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCCAGACCAGATGGGTTaGGGGTGCTCTGCAGAGGAC +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQPDQMG*GCSAED
Trigger: GTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTGG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS GCA 90 bp GTCAGGCCACACGGAGGGAACAGTAGTGGGTACCAGCCTCCCCTCTaGTGTCCAGTCCACCACATCAATCTCTTCCTCTTCAGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: VRPHGGNSSGYQPPL*CPVHHINLFLFRAG
Trigger: GCCAGCTCTGAAGAGGAAGAGATTGATGTGGTGGACTGGACAGCAGAGGGGAGGCTGGTACCCACTACTGTTCCCTCCGTGTGGCCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 90 bp GCTCCGCTTCCTGCTCCCACCTGTCTTTCCCAGACCAGATGGGTTTaGGGTGCTCTGCAGAGGACTAGCTCTGCCTGGTTTTGGCTTGTC +
Preference number: 5 (lower is better)
Translates to: APLPAPTCLSQTRWV*GALQRTSSAWFWLV
Trigger: GACAAGCCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTGGGAAAGACAGGTGGGAGCAGGAAGCGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 90 bp TTCAGGGCTCCGCTTCCTGCTCCCACCTGTCTTTCCCAGACCAGATaGGTTTGGGGTGCTCTGCAGAGGACTAGCTCTGCCTGGTTTTGG +
Preference number: 5 (lower is better)
Translates to: FRAPLPAPTCLSQTR*VWGALQRTSSAWFW
Trigger: CCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTGGGAAAGACAGGTGGGAGCAGGAAGCGGAGCCCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCTGAGAGATCTGGCCTaGGCTGTTACCTATGACCCA +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLRDLA*AVTYDP
Trigger: TGGGTCATAGGTAACAGCCAAGGCCAGATCTCTCAG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS GCA 90 bp CTGCTCCCACCTGTCTTTCCCAGACCAGATGGGTTTGGGGTGCTCTaGAGAGGACTAGCTCTGCCTGGTTTTGGCTTGTCCTCTGGTGTT +
Preference number: 5 (lower is better)
Translates to: LLPPVFPRPDGFGVL*RGLALPGFGLSSGV
Trigger: AACACCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTGGGAAAGACAGGTGGGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGTCAGTGAAGGTAAAGTaGCTTAGCACAGTGAGTGCC +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQSVKVK*LSTVSA
Trigger: GGCACTCACTGTGCTAAGCAACTTTACCTTCACTGA...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422652.5
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGGCAGGAGAGCACATGTaGGCAAGAGTCTTAACAAAC +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQAGEHM*ARVLTN
Trigger: GTTTGTTAAGACTCTTGCCAACATGTGCTCTCCTGC...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCTGCCTGGTTTTGGCTaGTCCTCTGGTGTTTCTTTA +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLPGFG*SSGVSL
Trigger: TAAAGAAACACCAGAGGACAAGCCAAAACCAGGCAG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCAGTCTCCACCCAGTTaGAGCAGGGAGGTGAGAGGT +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLQSPPS*SREVRG
Trigger: ACCTCTCACCTCCCTGCTCAAACTGGGTGGAGACTG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGCTGCCAGTAAGCCTTTaGCTAGCTAACATTTCCCAC +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQLPVSL*LANISH
Trigger: GTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAG...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp GAGGTGAGAGGTCCCCATAAGACCTCTGGGGAGTATCAAGGGAGCTaGCATGGAGAAGTTTGTCTTCCTGACCATCCAGTGGCTGGGAGC +
Preference number: 5 (lower is better)
Translates to: EVRGPHKTSGEYQGS*HGEVCLPDHPVAGS
Trigger: GCTCCCAGCCACTGGATGGTCAGGAAGACAAACTTCTCCATGTCAGCTCCCTTGATACTCCCCAGAGGTCTTATGGGGACCTCTCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGCCAGGGTACACCTGCCTCTTGTGCTGAGGGCACGTGCCAGCTTCTCTGCCAGAAATGCTGGAAGGCTTaGATGTACAGATACCAGGAG +
Preference number: 5 (lower is better)
Translates to: SQGTPASCAEGTCQLLCQKCWKA*MYRYQE
Trigger: CTCCTGGTATCTGTACATCAAAGCCTTCCAGCATTT...CTGGCAGAGAAGCTGGCACGTGCCCTCAGCACAAGAGGCAGGTGTACCCTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp CTGGGAGCTGGTAATTTCAAGGTCTGGTGTCCAACGGCCTCCTACTaGAAGCACTTCACTCACCTCAGAGGGCATGACAAGGGGGCTAAG +
Preference number: 5 (lower is better)
Translates to: LGAGNFKVWCPTASY*KHFTHLRGHDKGAK
Trigger: CTTAGCCCCCTTGTCATGCCCTCTGAGGTGAGTGAAGTGCTTTCAGTAGGAGGCCGTTGGACACCAGACCTTGAAATTACCAGCTCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS GCA 90 bp CCTGGTTTTGGCTTGTCCTCTGGTGTTTCTTTATTTACACTCCTCTaGCGCCAAAGACGCCGGCCAGGGGTTGCAGGCACTGAGCTAGAT +
Preference number: 5 (lower is better)
Translates to: PGFGLSSGVSLFTLL*RQRRRPGVAGTELD
Trigger: ATCTAGCTCAGTGCCTGCAACCCCTGGCCGGCGTCTTTGGCGGCAGAGGAGTGTAAATAAAGAAACACCAGAGGACAAGCCAAAACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 90 bp GGACTGGACTCAAACTCTGACTTCACCACTGGGTGGTCTGGGGAGTaGCTAGCAGAGACCAGAATGTCTTGTAGCTTAGTGCACATGGGG +
Preference number: 5 (lower is better)
Translates to: GLDSNSDFTTGWSGE*LAETRMSCSLVHMG
Trigger: CCCCATGTGCACTAAGCTACAAGACATTCTGGTCTCTGCTAGCCACTCCCCAGACCACCCAGTGGTGAAGTCAGAGTTTGAGTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCCACTCTGGCAGAGATaGGTGCAGCACTTGTTGGTT +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLPLWQR*VQHLLV
Trigger: AACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCTGGGCAACAGGTGTTaGTCCACAGAGGGGTACAAG +
Preference number: 5 (lower is better)
Translates to: SLPVSLLLANISHPPKAPLGNRC*STEGYK
Trigger: CTTGTACCCCTCTGTGGACAAACACCTGTTGCCCAG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp CAACATAGGTTCCTTCTCTACCAGTTCTGGACTGGACTCAAACTCTaGCTTCACCACTGGGTGGTCTGGGGAGTGGCTAGCAGAGACCAG +
Preference number: 5 (lower is better)
Translates to: QHRFLLYQFWTGLKL*LHHWVVWGVASRDQ
Trigger: CTGGTCTCTGCTAGCCACTCCCCAGACCACCCAGTGGTGAAGTCAGAGTTTGAGTCCAGTCCAGAACTGGTAGAGAAGGAACCTATGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 90 bp TTCACTCACCTCAGAGGGCATGACAAGGGGGCTAAGGAGCTCAGTTaGCCCTCTGTTCTCACCAGCAGGTTCCTTTTCCAATTCTGTGAG +
Preference number: 5 (lower is better)
Translates to: FTHLRGHDKGAKELS*PSVLTSRFLFQFCE
Trigger: CTCACAGAATTGGAAAAGGAACCTGCTGGTGAGAACAGAGGGCCAACTGAGCTCCTTAGCCCCCTTGTCATGCCCTCTGAGGTGAGTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 90 bp ATCAAGGGAGCTGACATGGAGAAGTTTGTCTTCCTGACCATCCAGTaGCTGGGAGCTGGTAATTTCAAGGTCTGGTGTCCAACGGCCTCC +
Preference number: 5 (lower is better)
Translates to: IKGADMEKFVFLTIQ*LGAGNFKVWCPTAS
Trigger: GGAGGCCGTTGGACACCAGACCTTGAAATTACCAGCTCCCAGCCACTGGATGGTCAGGAAGACAAACTTCTCCATGTCAGCTCCCTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTCCACTCTGGCAGAGATaGGTGCAGCACTTGTTGGTT +
Preference number: 5 (lower is better)
Translates to: SLPVSLLLANISHPPKAPPLWQR*VQHLLV
Trigger: AACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGG...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp CAGTTGGCCCTCTGTTCTCACCAGCAGGTTCCTTTTCCAATTCTGTaGGCTCCCTGGGCCAGAGTTCCATGTCTGGTAGACACCATTCTT +
Preference number: 5 (lower is better)
Translates to: QLALCSHQQVPFPIL*APWARVPCLVDTIL
Trigger: AAGAATGGTGTCTACCAGACATGGAACTCTGGCCCAGGGAGCTCACAGAATTGGAAAAGGAACCTGCTGGTGAGAACAGAGGGCCAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp CTCTGGGGAGTATCAAGGGAGCTGACATGGAGAAGTTTGTCTTCCTaGCCATCCAGTGGCTGGGAGCTGGTAATTTCAAGGTCTGGTGTC +
Preference number: 5 (lower is better)
Translates to: LWGVSRELTWRSLSS*PSSGWELVISRSGV
Trigger: GACACCAGACCTTGAAATTACCAGCTCCCAGCCACTGGATGGTCAGGAAGACAAACTTCTCCATGTCAGCTCCCTTGATACTCCCCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 90 bp AGATGGGTTTGGGGTGCTCTGCAGAGGACTAGCTCTGCCTGGTTTTaGCTTGTCCTCTGGTGTTTCTTTATTTACACTCCTCTGCCGCCA +
Preference number: 5 (lower is better)
Translates to: RWVWGALQRTSSAWF*LVLWCFFIYTPLPP
Trigger: TGGCGGCAGAGGAGTGTAAATAAAGAAACACCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCCATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGAGATTGGTGCAGCACTaGTTGGTTGTAAGCACTCTC +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLRLVQH*LVVSTL
Trigger: GAGAGTGCTTACAACCAACAAGTGCTGCACCAATCT...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGAGGACTTCAATCTTATaGCCCCAAGAGGACAAGGAG +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLRTSIL*PQEDKE
Trigger: CTCCTTGTCCTCTTGGGGCAATAAGATTGAAGTCCT...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCTGCCTGGTTTTGGCTaGTCCTCTGGTGTTTCTTTA +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLLPGFG*SSGVSL
Trigger: TAAAGAAACACCAGAGGACAAGCCAAAACCAGGCAG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACCCAGACCAGATGGGTTaGGGGTGCTCTGCAGAGGAC +
Preference number: 5 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNPDQMG*GCSAED
Trigger: GTCCTCTGCAGAGCACCCCAAACCCATCTGGTCTGG...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGTTTGAGAGGAGTCTCTaGTACCACTTCCCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLFERSL*YHFPAS
Trigger: ACTTGCTGGGAAGTGGTACAAGAGACTCCTCTCAAA...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp GGGTGCTGGACAGCATCCATCACTCCCACCCACTTAGTATTCCACCCAACACTGCTGCCAGTAAGCCTTTaGCTAGCTAACATTTCCCAC +
Preference number: 5 (lower is better)
Translates to: GCWTASITPTHLVFHPTLLPVSL*LANISH
Trigger: GTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAG...CAGTGTTGGGTGGAATACTAAGTGGGTGGGAGTGATGGATGCTGTCCAGCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTAGATTGGTGCAGCACTaGTTGGTTGTAAGCACTCTC +
Preference number: 5 (lower is better)
Translates to: SLPVSLLLANISHPPKAPRLVQH*LVVSTL
Trigger: GAGAGTGCTTACAACCAACAAGTGCTGCACCAATCT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTAGGACTTCAATCTTATaGCCCCAAGAGGACAAGGAG +
Preference number: 5 (lower is better)
Translates to: SLPVSLLLANISHPPKAPRTSIL*PQEDKE
Trigger: CTCCTTGTCCTCTTGGGGCAATAAGATTGAAGTCCT...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTTGGAAGTACATCTTCTaGGCCCCTGCAGAGGTTTTA +
Preference number: 5 (lower is better)
Translates to: SLPVSLLLANISHPPKAPWKYIF*APAEVL
Trigger: TAAAACCTCTGCAGGGGCCAAGAAGATGTACTTCCA...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp TCTGTTCTAGTAGGTGACATTTCCTGCTCATTACTGGAGAATGGCTaGGTTCCTGAAGGCTCTTGGAAGTCTCCTCCGGGATCTGGGATC +
Preference number: 5 (lower is better)
Translates to: SVLVGDISCSLLENG*VPEGSWKSPPGSGI
Trigger: GATCCCAGATCCCGGAGGAGACTTCCAAGAGCCTTCAGGAACTCAGCCATTCTCCAGTAATGAGCAGGAAATGTCACCTACTAGAACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp TCTTCCTCTTCAGAGCTGGCAGGAAGTGAGCCTAGTAGTTCAGAGTaGCCAGATACCTCCTTGCCTGCCTTGGGAGAAGGGTATAATAAC +
Preference number: 5 (lower is better)
Translates to: SSSSELAGSEPSSSE*PDTSLPALGEGYNN
Trigger: GTTATTATACCCTTCTCCCAAGGCAGGCAAGGAGGTATCTGGTCACTCTGAACTACTAGGCTCACTTCCTGCCAGCTCTGAAGAGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACGCTCTGGCCTTCCTCTaGAGCAGAAGAGTGCCAGAC +
Preference number: 5 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYALAFL*SRRVPD
Trigger: GTCTGGCACTCTTCTGCTCAAGAGGAAGGCCAGAGC...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp TCTCTGCCAGTAAGCCTTTTGCTAGCTAACATTTCCCACCCTCCCAAGGCCCCTTCCCAGCAAGTCCCATaGACAATCTTCCTAAGTTTA +
Preference number: 5 (lower is better)
Translates to: SLPVSLLLANISHPPKAPSQQVP*TIFLSL
Trigger: TAAACTTAGGAAGATTGTCAATGGGACTTGCTGGGA...AGGGGCCTTGGGAGGGTGGGAAATGTTAGCTAGCAAAAGGCTTACTGGCAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTCTCCACCCAGTTaGAGCAGGGAGGTGAGAGGT +
Preference number: 5 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYQSPPS*SREVRG
Trigger: ACCTCTCACCTCCCTGCTCAAACTGGGTGGAGACTG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp GCAGAGACCAGAATGTCTTGTAGCTTAGTGCACATGGGGGAGTCCTaGCACAGTTCTGTTCTAGTAGGTGACATTTCCTGCTCATTACTG +
Preference number: 5 (lower is better)
Translates to: AETRMSCSLVHMGES*HSSVLVGDISCSLL
Trigger: CAGTAATGAGCAGGAAATGTCACCTACTAGAACAGAACTGTGTCAGGACTCCCCCATGTGCACTAAGCTACAAGACATTCTGGTCTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCTGGGCAACAGGTGTTaGTCCACAGAGGGGTACAAG +
Preference number: 5 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYLGNRC*STEGYK
Trigger: CTTGTACCCCTCTGTGGACAAACACCTGTTGCCCAG...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACACCTCCTTGCCTGCCTaGGGAGAAGGGTATAATAAC +
Preference number: 5 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNTSLPA*GEGYNN
Trigger: GTTATTATACCCTTCTCCCAAGGCAGGCAAGGAGGT...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACAGAGTGCCAGACAAATaGTCTGCATTCTGTCGGTTG +
Preference number: 5 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNRVPDK*SAFCRL
Trigger: CAACCGACAGAATGCAGACAATTTGTCTGGCACTCT...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTTTGAGAGGAGTCTCTaGTACCACTTCCCAGCAAGT +
Preference number: 5 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNFERSL*YHFPAS
Trigger: ACTTGCTGGGAAGTGGTACAAGAGACTCCTCTCAAA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp ACCTATGACCCACCAGAATTGGGGAGCACACAGTTTGTTTCAGTTGTCACTAACTATGACCCACCAGAATaGGGGAGCACACAGTTTGTT +
Preference number: 5 (lower is better)
Translates to: TYDPPELGSTQFVSVVTNYDPPE*GSTQFV
Trigger: AACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATA...GTTAGTGACAACTGAAACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACTTGGTGCAGCACTTGTaGGTTGTAAGCACTCTCGGT +
Preference number: 5 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYLVQHL*VVSTLG
Trigger: ACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAA...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTTATGACCCACCAGAATaGGGGAGCACACAGTTTGTT +
Preference number: 5 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLYDPPE*GSTQFV
Trigger: AACAAACTGTGTGCTCCCCAATTCTGGTGGGTCATA...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTTGGAAGTACATCTTCTaGGCCCCTGCAGAGGTTTTA +
Preference number: 5 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLWKYIF*APAEVL
Trigger: TAAAACCTCTGCAGGGGCCAAGAAGATGTACTTCCA...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTAAATGCTGGAAGGCTTaGATGTACAGATACCAGGAG +
Preference number: 5 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLKCWKA*MYRYQE
Trigger: CTCCTGGTATCTGTACATCAAAGCCTTCCAGCATTT...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AAACAATACCCCACCACAGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACGATCTGGGGGCTATCTaGAGTGTTTTTGAGAGGAGT +
Preference number: 5 (lower is better)
Translates to: KQYPTTEEGVLSQLFLNYDLGAI*SVFERS
Trigger: ACTCCTCTCAAAAACACTCAAGATAGCCCCCAGATC...GTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCTGTGGTGGGGTATTGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 90 bp CCACTGAGACTCAACTGCTACAATGCTGACTACTTATATTCTTCCTaGGCACCACATCCCAGCTCCACAGGTATAATCTTCAAGTTAACA +
Preference number: 5 (lower is better)
Translates to: PLRLNCYNADYLYSS*APHPSSTGIIFKLT
Trigger: TGTTAACTTGAAGATTATACCTGTGGAGCTGGGATGTGGTGCTCAGGAAGAATATAAGTAGTCAGCATTGTAGCAGTTGAGTCTCAGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000527995.1
CDS-3UTR CAA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCCTGAGAGATCTGGCCTaGGCTGTTACCTATGACCCA +
Preference number: 5 (lower is better)
Translates to: NKMVQVHNFLSMVPLASALRDLA*AVTYDP
Trigger: TGGGTCATAGGTAACAGCCAAGGCCAGATCTCTCAG...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCAGAGTGCCAGACAAATaGTCTGCATTCTGTCGGTTG +
Preference number: 5 (lower is better)
Translates to: NKMVQVHNFLSMVPLASARVPDK*SAFCRL
Trigger: CAACCGACAGAATGCAGACAATTTGTCTGGCACTCT...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCGATCTGGGGGCTATCTaGAGTGTTTTTGAGAGGAGT +
Preference number: 5 (lower is better)
Translates to: NKMVQVHNFLSMVPLASADLGAI*SVFERS
Trigger: ACTCCTCTCAAAAACACTCAAGATAGCCCCCAGATC...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AATAAGATGGTACAAGTTCATAATTTTCTATCTATGGTACCCTTGGCTTCTGCCTGGGGAGCACACAGTTaGTTTCAGTTGTCACTAACC +
Preference number: 5 (lower is better)
Translates to: NKMVQVHNFLSMVPLASAWGAHS*FQLSLT
Trigger: GGTTAGTGACAACTGAAACAAACTGTGTGCTCCCCA...GGCAGAAGCCAAGGGTACCATAGATAGAAAATTATGAACTTGTACCATCTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS-3UTR CAA 90 bp AGAGGAGGGTGTTCTTTCTCAGCTTTTCCTAAATTACCAGTGACTGGATGCCTTAATGGCAGGGGAATTTaGAAAGTGAGAGATAATAGT +
Preference number: 5 (lower is better)
Translates to: RGGCSFSAFPKLPVTGCLNGRGI*KVRDNS
Trigger: ACTATTATCTCTCACTTTCAAAATTCCCCTGCCATT...AAGGCATCCAGTCACTGGTAATTTAGGAAAAGCTGAGAAAGAACACCCTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000436147.3
CDS TCA 72 bp CACCCTGAGCTGGCCTCTCCCGCTCCAGGCGCTCTGTaGAGAAGGGGCTACAAGCTGACAGGATGCAGCAGT +
Preference number: 6 (lower is better)
Translates to: HPELASPAPGAL*RRGYKLTGCSS
Trigger: ACTGCTGCATCCTGTCAGCTTGTAGCCCCTTCTTCACAGAGCGCCTGGAGCGGGAGAGGCCAGCTCAGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422652.5
ENST00000436147.3
ENST00000527995.1
CDS CAA 90 bp GGTGGCTGGGTGTCACCACTCTGGCAGAGATTGGTGCAGCACTTGTaGGTTGTAAGCACTCTCGGTTCAGCCTTCGGCCCTGTGGGGCCT +
Preference number: 6 (lower is better)
Translates to: GGWVSPLWQRLVQHL*VVSTLGSAFGPVGP
Trigger: AGGCCCCACAGGGCCGAAGGCTGAACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGGTGACACCCAGCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 90 bp GGTGGTGGCTGGGTGTCACCACTCTGGCAGAGATTGGTGCAGCACTaGTTGGTTGTAAGCACTCTCGGTTCAGCCTTCGGCCCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: GGGWVSPLWQRLVQH*LVVSTLGSAFGPVG
Trigger: CCCCACAGGGCCGAAGGCTGAACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGGTGACACCCAGCCACCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 90 bp GTGGGGTGTGAGGGTGGTGGCTGGGTGTCACCACTCTGGCAGAGATaGGTGCAGCACTTGTTGGTTGTAAGCACTCTCGGTTCAGCCTTC +
Preference number: 6 (lower is better)
Translates to: VGCEGGGWVSPLWQR*VQHLLVVSTLGSAF
Trigger: GAAGGCTGAACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGGTGACACCCAGCCACCACCCTCACACCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp GTGAAGAAGGGGCTACAAGCTGACAGGATGCAGCAGTaGGCTGGAACTGCCTCACCTTCTGCCTGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: VKKGLQADRMQQ*AGTASPSACRR
Trigger: CCTTCTGCAGGCAGAAGGTGAGGCAGTTCCAGCTCACTGCTGCATCCTGTCAGCTTGTAGCCCCTTCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000422652.5
ENST00000436147.3
ENST00000527995.1
CDS GCA 72 bp GGCTTGTCCTCTGGTGTTTCTTTATTTACACTCCTCTaGCGCCAAAGACGCCGGCCAGGGGTTGCAGGCACT +
Preference number: 6 (lower is better)
Translates to: GLSSGVSLFTLL*RQRRRPGVAGT
Trigger: AGTGCCTGCAACCCCTGGCCGGCGTCTTTGGCGGCAGAGGAGTGTAAATAAAGAAACACCAGAGGACAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS GCA 72 bp CACGGAGGGAACAGTAGTGGGTACCAGCCTCCCCTCTaGTGTCCAGTCCACCACATCAATCTCTTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: HGGNSSGYQPPL*CPVHHINLFLF
Trigger: GAAGAGGAAGAGATTGATGTGGTGGACTGGACAGCAGAGGGGAGGCTGGTACCCACTACTGTTCCCTCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 72 bp GAGGGTGGTGGCTGGGTGTCACCACTCTGGCAGAGATaGGTGCAGCACTTGTTGGTTGTAAGCACTCTCGGT +
Preference number: 6 (lower is better)
Translates to: EGGGWVSPLWQR*VQHLLVVSTLG
Trigger: ACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGGTGACACCCAGCCACCACCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp TCAGAGCTGGCAGGAAGTGAGCCTAGTAGTTCAGAGTaGCCAGATACCTCCTTGCCTGCCTTGGGAGAAGGG +
Preference number: 6 (lower is better)
Translates to: SELAGSEPSSSE*PDTSLPALGEG
Trigger: CCCTTCTCCCAAGGCAGGCAAGGAGGTATCTGGTCACTCTGAACTACTAGGCTCACTTCCTGCCAGCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 72 bp GTGTCACCACTCTGGCAGAGATTGGTGCAGCACTTGTaGGTTGTAAGCACTCTCGGTTCAGCCTTCGGCCCT +
Preference number: 6 (lower is better)
Translates to: VSPLWQRLVQHL*VVSTLGSAFGP
Trigger: AGGGCCGAAGGCTGAACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGGTGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 72 bp TGGGTGTCACCACTCTGGCAGAGATTGGTGCAGCACTaGTTGGTTGTAAGCACTCTCGGTTCAGCCTTCGGC +
Preference number: 6 (lower is better)
Translates to: WVSPLWQRLVQH*LVVSTLGSAFG
Trigger: GCCGAAGGCTGAACCGAGAGTGCTTACAACCAACAAGTGCTGCACCAATCTCTGCCAGAGTGGTGACACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 90 bp GGGTTTGGGGTGCTCTGCAGAGGACTAGCTCTGCCTGGTTTTGGCTaGTCCTCTGGTGTTTCTTTATTTACACTCCTCTGCCGCCAAAGA +
Preference number: 6 (lower is better)
Translates to: GFGVLCRGLALPGFG*SSGVSLFTLLCRQR
Trigger: TCTTTGGCGGCAGAGGAGTGTAAATAAAGAAACACCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCACCCCAAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp AAGTCTCCTCCGGGATCTGGGATCTGGGGGCTATCTTaGGTGTTTTTGAGAGGAGTCTCTTGTACCACTTCC +
Preference number: 6 (lower is better)
Translates to: KSPPGSGIWGLS*VFLRGVSCTTS
Trigger: GGAAGTGGTACAAGAGACTCCTCTCAAAAACACTCAAGATAGCCCCCAGATCCCAGATCCCGGAGGAGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp CATTTCCTGCTCATTACTGGAGAATGGCTGAGTTCCTaGAGGCTCTTGGAAGTCTCCTCCGGGATCTGGGAT +
Preference number: 6 (lower is better)
Translates to: HFLLITGEWLSS*RLLEVSSGIWD
Trigger: ATCCCAGATCCCGGAGGAGACTTCCAAGAGCCTTCAGGAACTCAGCCATTCTCCAGTAATGAGCAGGAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp GTAGGTGACATTTCCTGCTCATTACTGGAGAATGGCTaGGTTCCTGAAGGCTCTTGGAAGTCTCCTCCGGGA +
Preference number: 6 (lower is better)
Translates to: VGDISCSLLENG*VPEGSWKSPPG
Trigger: TCCCGGAGGAGACTTCCAAGAGCCTTCAGGAACTCAGCCATTCTCCAGTAATGAGCAGGAAATGTCACCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp GGTAATTTCAAGGTCTGGTGTCCAACGGCCTCCTACTaGAAGCACTTCACTCACCTCAGAGGGCATGACAAG +
Preference number: 6 (lower is better)
Translates to: GNFKVWCPTASY*KHFTHLRGHDK
Trigger: CTTGTCATGCCCTCTGAGGTGAGTGAAGTGCTTTCAGTAGGAGGCCGTTGGACACCAGACCTTGAAATTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 72 bp TCAAACTCTGACTTCACCACTGGGTGGTCTGGGGAGTaGCTAGCAGAGACCAGAATGTCTTGTAGCTTAGTG +
Preference number: 6 (lower is better)
Translates to: SNSDFTTGWSGE*LAETRMSCSLV
Trigger: CACTAAGCTACAAGACATTCTGGTCTCTGCTAGCCACTCCCCAGACCACCCAGTGGTGAAGTCAGAGTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 72 bp GCTGACATGGAGAAGTTTGTCTTCCTGACCATCCAGTaGCTGGGAGCTGGTAATTTCAAGGTCTGGTGTCCA +
Preference number: 6 (lower is better)
Translates to: ADMEKFVFLTIQ*LGAGNFKVWCP
Trigger: TGGACACCAGACCTTGAAATTACCAGCTCCCAGCCACTGGATGGTCAGGAAGACAAACTTCTCCATGTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp TTTCTTGTGGAGTTGGGCAGGCTCTGGCCTTCCTCTTaGGCAGAAGAGTGCCAGACAAATTGTCTGCATTCT +
Preference number: 6 (lower is better)
Translates to: FLVELGRLWPSS*AEECQTNCLHS
Trigger: AGAATGCAGACAATTTGTCTGGCACTCTTCTGCTCAAGAGGAAGGCCAGAGCCTGCCCAACTCCACAAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CCA 72 bp TGGGGTGCTCTGCAGAGGACTAGCTCTGCCTGGTTTTaGCTTGTCCTCTGGTGTTTCTTTATTTACACTCCT +
Preference number: 6 (lower is better)
Translates to: WGALQRTSSAWF*LVLWCFFIYTP
Trigger: AGGAGTGTAAATAAAGAAACACCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCACCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 72 bp TTTTCTTGTGGAGTTGGGCAGGCTCTGGCCTTCCTCTaGAGCAGAAGAGTGCCAGACAAATTGTCTGCATTC +
Preference number: 6 (lower is better)
Translates to: FSCGVGQALAFL*SRRVPDKLSAF
Trigger: GAATGCAGACAATTTGTCTGGCACTCTTCTGCTCAAGAGGAAGGCCAGAGCCTGCCCAACTCCACAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 72 bp GTGCTCTGCAGAGGACTAGCTCTGCCTGGTTTTGGCTaGTCCTCTGGTGTTTCTTTATTTACACTCCTCTGC +
Preference number: 6 (lower is better)
Translates to: VLCRGLALPGFG*SSGVSLFTLLC
Trigger: GCAGAGGAGTGTAAATAAAGAAACACCAGAGGACAAGCCAAAACCAGGCAGAGCTAGTCCTCTGCAGAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp CATGGGGGAGTCCTGACACAGTTCTGTTCTAGTAGGTaGCATTTCCTGCTCATTACTGGAGAATGGCTGAGT +
Preference number: 6 (lower is better)
Translates to: HGGVLTQFCSSR*HFLLITGEWLS
Trigger: ACTCAGCCATTCTCCAGTAATGAGCAGGAAATGTCACCTACTAGAACAGAACTGTGTCAGGACTCCCCCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp AGAATGTCTTGTAGCTTAGTGCACATGGGGGAGTCCTaGCACAGTTCTGTTCTAGTAGGTGACATTTCCTGC +
Preference number: 6 (lower is better)
Translates to: RMSCSLVHMGES*HSSVLVGDISC
Trigger: GCAGGAAATGTCACCTACTAGAACAGAACTGTGTCAGGACTCCCCCATGTGCACTAAGCTACAAGACATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 72 bp CTGGGGGCTATCTTGAGTGTTTTTGAGAGGAGTCTCTaGTACCACTTCCCAGCAAGTCCCATTGACAATCTT +
Preference number: 6 (lower is better)
Translates to: LGAILSVFERSL*YHFPASPIDNL
Trigger: AAGATTGTCAATGGGACTTGCTGGGAAGTGGTACAAGAGACTCCTCTCAAAAACACTCAAGATAGCCCCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS CAA 90 bp ATCTGGGATCTGGGGGCTATCTTGAGTGTTTTTGAGAGGAGTCTCTaGTACCACTTCCCAGCAAGTCCCATTGACAATCTTCCTAAGTTT +
Preference number: 6 (lower is better)
Translates to: IWDLGAILSVFERSL*YHFPASPIDNLPKF
Trigger: AAACTTAGGAAGATTGTCAATGGGACTTGCTGGGAAGTGGTACAAGAGACTCCTCTCAAAAACACTCAAGATAGCCCCCAGATCCCAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000436147.3
CDS TCA 72 bp CTCAACTGCTACAATGCTGACTACTTATATTCTTCCTaGGCACCACATCCCAGCTCCACAGGTATAATCTTC +
Preference number: 6 (lower is better)
Translates to: LNCYNADYLYSS*APHPSSTGIIF
Trigger: GAAGATTATACCTGTGGAGCTGGGATGTGGTGCTCAGGAAGAATATAAGTAGTCAGCATTGTAGCAGTTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000527995.1
CDS CCA 72 bp TCAGTGAAGGTAAAGTTGCTTAGCACAGTGAGTGCCTaGCACAAAATAACTACCAAGCCCCAAATGGTAACT +
Preference number: 6 (lower is better)
Translates to: SVKVKLLSTVSA*HKITTKPQMVT
Trigger: AGTTACCATTTGGGGCTTGGTAGTTATTTTGTGCCAGGCACTCACTGTGCTAAGCAACTTTACCTTCACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000527995.1
CDS CAA 72 bp CTGTATAGGATTTTGGGACTGGCAGGAGAGCACATGTaGGCAAGAGTCTTAACAAACCTTCTAGGTTTTCAC +
Preference number: 6 (lower is better)
Translates to: LYRILGLAGEHM*ARVLTNLLGFH
Trigger: GTGAAAACCTAGAAGGTTTGTTAAGACTCTTGCCAACATGTGCTCTCCTGCCAGTCCCAAAATCCTATACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000422652.5
ENST00000436147.3
ENST00000527995.1
CDS TCA 72 bp ATTTCCATTACCACTGAGACTCAACTGCTACAATGCTaGCTACTTATATTCTTCCTGAGCACCACATCCCAG +
Preference number: 6 (lower is better)
Translates to: ISITTETQLLQC*LLIFFLSTTSQ
Trigger: CTGGGATGTGGTGCTCAGGAAGAATATAAGTAGTCAGCATTGTAGCAGTTGAGTCTCAGTGGTAATGGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422652.5
ENST00000527995.1