RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BRSK1 (Homo sapiens)

Ensembl gene IDs: ENSG00000160469

Ensembl transcript IDs: ENST00000309383.6, ENST00000326848.7, ENST00000585418.1, ENST00000586626.1, ENST00000588584.1, ENST00000590333.5, ENST00000591774.5, ENST00000592539.6

Found 269 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCGTTGGGCACGGCCTGTaGAGCCCCATCCCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLVGHGL*SPIPAG
Trigger: CCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAAC...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR GCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGTGGAGCCCCATCCCTaGAGGGCAAGGCCGGTTTTT +
Preference number: 2 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPVEPHP*RARPVF
Trigger: AAAAACCGGCCTTGCCCTGCAGGGATGGGGCTCCAC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR GCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCGTGGAGCCCCATCCCTaGAGGGCAAGGCCGGTTTTT +
Preference number: 2 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLVEPHP*RARPVF
Trigger: AAAAACCGGCCTTGCCCTGCAGGGATGGGGCTCCAC...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAAGAACCACCCCCAGTTaGGCACGGCCTGTGGAGCCC +
Preference number: 2 (lower is better)
Translates to: ESETRTQAGSRETRIPSGRTTPS*ARPVEP
Trigger: GGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCTCCCGACATGTTCCTTaGGCCTTATTTACAGATTCA +
Preference number: 2 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPSRHVP*ALFTDS
Trigger: TGAATCTGTAAATAAGGCCCAAGGAACATGTCGGGA...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACTCCCGACATGTTCCTTaGGCCTTATTTACAGATTCA +
Preference number: 2 (lower is better)
Translates to: DAGRITRNQNSFRRANPYSRHVP*ALFTDS
Trigger: TGAATCTGTAAATAAGGCCCAAGGAACATGTCGGGA...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGATCCCGACATGTTCCTTaGGCCTTATTTACAGATTCA +
Preference number: 2 (lower is better)
Translates to: ESETRTQAGSRETRIPSGSRHVP*ALFTDS
Trigger: TGAATCTGTAAATAAGGCCCAAGGAACATGTCGGGA...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CAA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTCCCGGGAAGAGGGGGTaGGGGACGACACAGGGACAG +
Preference number: 3 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRPGKRG*GTTQGQ
Trigger: CTGTCCCTGTGTCGTCCCCAACCCCCTCTTCCCGGG...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCTCCCGACATGTTCCTaGGGCCTTATTTACAGATTC +
Preference number: 3 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPLPTCS*GLIYRF
Trigger: GAATCTGTAAATAAGGCCCAAGGAACATGTCGGGAG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCTCCCGACATGTTCCTaGGGCCTTATTTACAGATTC +
Preference number: 3 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPLPTCS*GLIYRF
Trigger: GAATCTGTAAATAAGGCCCAAGGAACATGTCGGGAG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
3UTR-3UTR CAA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCGACATGTTCCTaGGGCCTTATTTACAGATTC +
Preference number: 3 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSLPTCS*GLIYRF
Trigger: GAATCTGTAAATAAGGCCCAAGGAACATGTCGGGAG...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGCTCAGCTCTGGGTCTaGGCGGCCGGGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPAQLWV*AAGWGL
Trigger: CAGCCCCCACCCGGCCGCCCAGACCCAGAGCTGAGC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACCCCGGACGACATGGTaGCCTTGGTCCCGGCCCGAC +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAPRTTW*PWSRPD
Trigger: GTCGGGCCGGGACCAAGGGCACCATGTCGTCCGGGG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR GCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCTGGCCCGGGGCGTGTaGAGAGGCGAGTGCAAGGGG +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPLARGV*RGECKG
Trigger: CCCCTTGCACTCGCCTCTGCACACGCCCCGGGCCAG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTGCCACCACCTCCGCTaGCGTCCCGTCGCGGGGAGG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPCHHLR*RPVAGR
Trigger: CCTCCCCGCGACGGGACGGCAGCGGAGGTGGTGGCA...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCGGGTCCCGGTGGGACTaGCCCGGGGCGTGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSGSRWD*PGACAE
Trigger: CTCTGCACACGCCCCGGGCCAGTCCCACCGGGACCC...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACTGCAGGCTTCGGGGTaGGGCACCAGCAGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRALQASG*GTSRPG
Trigger: ACCCGGCCTGCTGGTGCCCCACCCCGAAGCCTGCAG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACTGCGCAGCTCGCGATaGAGCCTCTCGCGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRALRSSR*SLSRSL
Trigger: CAGGGACCGCGAGAGGCTGCATCGCGAGCTGCGCAG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCTGCGCAGCTCGCGATaGAGCCTCTCGCGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPLRSSR*SLSRSL
Trigger: CAGGGACCGCGAGAGGCTGCATCGCGAGCTGCGCAG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCTGGCCCGGGGCGTGTaGAGAGGCGAGTGCAAGGGG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPLARGV*RGECKG
Trigger: CCCCTTGCACTCGCCTCTGCACACGCCCCGGGCCAG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGATGGCAGGCTCCGCATaGCTACCCGGCGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPMAGSA*LPGGQG
Trigger: CCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCAT...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCCAAGGCCCGTCGGGTaGGTACAGGGGAGCCACCAC +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPPRPVG*VQGSHH
Trigger: GTGGTGGCTCCCCTGTACCCACCCGACGGGCCTTGG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
69% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCTGCAGGCTTCGGGGTaGGGCACCAGCAGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPLQASG*GTSRPG
Trigger: ACCCGGCCTGCTGGTGCCCCACCCCGAAGCCTGCAG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCGCTCAGCTCTGGGTCTaGGCGGCCGGGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLAQLWV*AAGWGL
Trigger: CAGCCCCCACCCGGCCGCCCAGACCCAGAGCTGAGC...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGCCTCTCGCGGTCCCTaGAGCAGCCCAGTGATGCCA +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAASRGP*SSPVMP
Trigger: TGGCATCACTGGGCTGCTTCAGGGACCGCGAGAGGC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCTGCGCAGCTCGCGATaGAGCCTCTCGCGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPLRSSR*SLSRSL
Trigger: CAGGGACCGCGAGAGGCTGCATCGCGAGCTGCGCAG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGTGTGCAGAGGCGAGTaGAAGGGGGTCCCGCCAGAG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAVCRGE*KGVPPE
Trigger: CTCTGGCGGGACCCCCTTGCACTCGCCTCTGCACAC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACCCGTTCTTCTCGTCTaGCAGGGCCTGCACGGAGGG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAPVLLV*QGLHGG
Trigger: CCCTCCGTGCAGGCCCTGGCAGACGAGAAGAACGGG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCTGGCCCCGGACGACATaGTGCCCTTGGTCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLWPRTT*CPWSRP
Trigger: GGGCCGGGACCAAGGGCACCATGTCGTCCGGGGCCA...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACCAGCAGGCCGGGTCTaGGCCCCGTTCTTCTCGTCT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAPAGRV*APFFSS
Trigger: AGACGAGAAGAACGGGGCCCAGACCCGGCCTGCTGG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCAGAGCTGCTCAGCTCTaGGTCTGGGCGGCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSRAAQL*VWAAGW
Trigger: CCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCT...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGTTGGGCACGGCCTGTaGAGCCCCATCCCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPVGHGL*SPIPAG
Trigger: CCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAAC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAAGAACCACCCCCAGTTaGGCACGGCCTGTGGAGCCC +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRARTTPS*ARPVEP
Trigger: GGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCT...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACCGTACAGAAGGTCGTaGGGGGAGGACCAGGGGAGG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAPYRRS*GEDQGR
Trigger: CCTCCCCTGGTCCTCCCCCCACGACCTTCTGTACGG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGGTCGCCGCTTCCCGTaGCGGCTCAGCATGGGAGAA +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPGRRFP*RLSMGE
Trigger: TTCTCCCATGCTGAGCCGTCACGGGAAGCGGCGACC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACACCCCCGGCATCGGTaGTGCTCAGGACTTCCATGG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAHPRHR*CSGLPW
Trigger: CCATGGAAGTCCTGAGCATCACCGATGCCGGGGGTG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCCGTGGAGGCTCCACTaGCGCTACGGGATCTCTGGC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSPWRLH*RYGISG
Trigger: GCCAGAGATCCCGTAGCGTCAGTGGAGCCTCCACGG...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACGGGATCTCTGGCTGTaGTGGGCCATCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRARDLWL*WAISKA
Trigger: GGCCTTGGAGATGGCCCAGCACAGCCAGAGATCCCG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGTGTGCAGAGGCGAGTaGAAGGGGGTCCCGCCAGAG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPVCRGE*KGVPPE
Trigger: CTCTGGCGGGACCCCCTTGCACTCGCCTCTGCACAC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCACGACATGGTGCCCTTaGTCCCGGCCCGACCGGTCC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLTTWCP*SRPDRS
Trigger: GGACCGGTCGGGCCGGGACCAAGGGCACCATGTCGT...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGGTCCAGCTCTCCGTTaGATGGCAGGCTCCGCATGG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAGPALR*MAGSAW
Trigger: CCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCAAGGCCCGTCGGGTaGGTACAGGGGAGCCACCAC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLPRPVG*VQGSHH
Trigger: GTGGTGGCTCCCCTGTACCCACCCGACGGGCCTTGG...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGGCTGCTTAGAGGGCTaGAGGACAGACCCGTGGAGG +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAGCLEG*RTDPWR
Trigger: CCTCCACGGGTCTGTCCTCCAGCCCTCTAAGCAGCC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCAAGCGGACGGGCTTTTaGAAGACGGAGGGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPKRTGF*KTEGPP
Trigger: TGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCAGAGCTGCTCAGCTCTaGGTCTGGGCGGCCGGGTGG +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLRAAQL*VWAAGW
Trigger: CCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCT...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACTCCAGGCACGGGTCTaGCTCGTGTTTCCCGCCTCT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRALQARV*LVFPAS
Trigger: AGAGGCGGGAAACACGAGCCAGACCCGTGCCTGGAG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000326848.7
CDS-3UTR TCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCACCCCCGGCATCGGTaGTGCTCAGGACTTCCATGG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPHPRHR*CSGLPW
Trigger: CCATGGAAGTCCTGAGCATCACCGATGCCGGGGGTG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCAGCCCCCGGCTCCGGTaGAAAGGAAAAGACCGGACT +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPSPRLR*KGKDRT
Trigger: AGTCCGGTCTTTTCCTTTTCACCGGAGCCGGGGGCT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCTGCATCTTGCGCCGGTaGAAGCGAGGGGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLCILRR*KRGEPR
Trigger: CCTGGGCTCCCCTCGCTTTCACCGGCGCAAGATGCA...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGACCCTCAGAGGAGCTaGTGTCCACCTGGAAGCGGA +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPDPQRS*CPPGSG
Trigger: TCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCGGTTCTCCTCCTCACTaGGCAGCTCGCGATGCAGCC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSGSPPH*AARDAA
Trigger: GGCTGCATCGCGAGCTGCGCAGTGAGGAGGAGAACC...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGAACCAGGAGCGTTTTaGCAGCTCCGGGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPEPGAF*QLRGGL
Trigger: GAGTCCTCCCCGGAGCTGGCAAAACGCTCCTGGTTC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGACCCCACCTCCCTCCTTaGCCCCGGACGACATGGTGC +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRPHLPP*PRTTWC
Trigger: GCACCATGTCGTCCGGGGCCAAGGAGGGAGGTGGGG...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGATCTCTGGCTGTGCTaGGCCATCTCCAAGGCCCGT +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPDLWLC*AISKAR
Trigger: ACGGGCCTTGGAGATGGCCCAGCACAGCCAGAGATC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAACGCTACGGGATCTCTaGCTGTGCTGGGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRATLRDL*LCWAIS
Trigger: GGAGATGGCCCAGCACAGCCAGAGATCCCGTAGCGT...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCGGCTGCTTAGAGGGCTaGAGGACAGACCCGTGGAGG +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSGCLEG*RTDPWR
Trigger: CCTCCACGGGTCTGTCCTCCAGCCCTCTAAGCAGCC...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCTCGCGGGGAGGGCTCTaGACCCTCAGAGGAGCTGAT +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSSRGGL*TLRGAD
Trigger: ATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGA...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGCAGAGGGGTCCCGTTaGTGGCCAGGAGCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAAEGSR*WPGASC
Trigger: ACAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCCCGGTTCACGATCTTaGTGGCGACCTTCTGACCCG +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSPGSRS*WRPSDP
Trigger: CGGGTCAGAAGGTCGCCATCAAGATCGTGAACCGGG...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGCAGGGCGAAGAGGATaGCTCCACAGCTCCACATGT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAAGRRG*LHSSTC
Trigger: ACATGTGGAGCTGTGGAGTCATCCTCTTCGCCCTGC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGCAGGGCGAAGAGGATaGCTCCACAGCTCCACATGT +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPAGRRG*LHSSTC
Trigger: ACATGTGGAGCTGTGGAGTCATCCTCTTCGCCCTGC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAGGTCGCCGCTTCCCGTaGCGGCTCAGCATGGGAGAA +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRGRRFP*RLSMGE
Trigger: TTCTCCCATGCTGAGCCGTCACGGGAAGCGGCGACC...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCGACCCTCAGAGGAGCTaGTGTCCACCTGGAAGCGGA +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSDPQRS*CPPGSG
Trigger: TCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTC...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCTTCTCTCCGGCACGCTaGCATCACCATCCGGGGACT +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSFSPAR*HHHPGT
Trigger: AGTCCCCGGATGGTGATGTCAGCGTGCCGGAGAGAA...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000590333.5
CDS-3UTR GCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAAGGGCTGGTCATGAGTaGTCAGGAGCTGTGCCTGGA +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRARAGHE*SGAVPG
Trigger: TCCAGGCACAGCTCCTGAGCACTCATGACCAGCCCT...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACCTGGTCCTCACAGCTaGGATACCGCTCCTTCCGAT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAPGPHS*DTAPSD
Trigger: ATCGGAAGGAGCGGTATCCCAGCTGTGAGGACCAGG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCCTGGTCCTCACAGCTaGGATACCGCTCCTTCCGAT +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPPGPHS*DTAPSD
Trigger: ATCGGAAGGAGCGGTATCCCAGCTGTGAGGACCAGG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCATGCTCAGGACTTCCATaGACTTCCGCTCTGGTCGCC +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRACSGLP*TSALVA
Trigger: GGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAGCA...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCACGCTACGGGATCTCTaGCTGTGCTGGGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSTLRDL*LCWAIS
Trigger: GGAGATGGCCCAGCACAGCCAGAGATCCCGTAGCGT...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGACCAGCAGGCCGGGTCTaGGCCCCGTTCTTCTCGTCT +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRPAGRV*APFFSS
Trigger: AGACGAGAAGAACGGGGCCCAGACCCGGCCTGCTGG...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGAGGGGTCCCGTTGGTaGCCAGGAGCTTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPEGSRW*PGASCP
Trigger: AGGACAAGAAGCTCCTGGCCACCAACGGGACCCCTC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGCAGAGGGGTCCCGTTaGTGGCCAGGAGCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPAEGSR*WPGASC
Trigger: ACAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAAGAACCACCCCCAGTTaGGCACGGCCTGTGGAGCCC +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRRTTPS*ARPVEP
Trigger: GGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCT...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCGTGTTTCCCGCCTCTaGGAGTCCTGGACTCCTAGC +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPRVSRL*ESWTPS
Trigger: GCTAGGAGTCCAGGACTCCCAGAGGCGGGAAACACG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326848.7
CDS-3UTR TCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCAGACGTCGTGGAGCTTaGGGACATGTGGGTGTTCGA +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPRRRGA*GHVGVR
Trigger: TCGAACACCCACATGTCCTCAAGCTCCACGACGTCT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCTGTGACAGCACACTGTaGCTCAGGCTGGGGATCGAC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSCDSTL*LRLGID
Trigger: GTCGATCCCCAGCCTGAGTCACAGTGTGCTGTCACA...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCCTTGTACTCGGCCCTaGAGCTGGTCTGTGACAGCA +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSPCTRP*SWSVTA
Trigger: TGCTGTCACAGACCAGCTTCAGGGCCGAGTACAAGG...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAGGTTCTCCTCCTCACTaGGCAGCTCGCGATGCAGCC +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRGSPPH*AARDAA
Trigger: GGCTGCATCGCGAGCTGCGCAGTGAGGAGGAGAACC...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR GCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCGAGAAGGCAGCGTCTaGGTTTTGGAAGTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSREGSV*VLEVGE
Trigger: CTCCCCGACTTCCAAAACGCAGACGCTGCCTTCTCG...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCGAGAAGGCAGCGTCTaGGTTTTGGAAGTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPREGSV*VLEVGE
Trigger: CTCCCCGACTTCCAAAACGCAGACGCTGCCTTCTCG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGATGCCACCACCTCCGCTaGCGTCCCGTCGCGGGGAGG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGCHHLR*RPVAGR
Trigger: CCTCCCCGCGACGGGACGGCAGCGGAGGTGGTGGCA...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGTGCCACCACCTCCGCTaGCGTCCCGTCGCGGGGAGG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGCHHLR*RPVAGR
Trigger: CCTCCCCGCGACGGGACGGCAGCGGAGGTGGTGGCA...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCAGCGCAGACACAATCTaGCGGAAGAACTTTCGGGCC +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPSADTI*RKNFRA
Trigger: GGCCCGAAAGTTCTTCCGCCAGATTGTGTCTGCGCT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCAGCTCTCCGTTGGATaGCAGGCTCCGCATGGCTAC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLQLSVG*QAPHGY
Trigger: GTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTG...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCTGCTCAGGACTTCCATaGACTTCCGCTCTGGTCGCC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSCSGLP*TSALVA
Trigger: GGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAGCA...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCGATCTCTGGCTGTGCTaGGCCATCTCCAAGGCCCGT +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLDLWLC*AISKAR
Trigger: ACGGGCCTTGGAGATGGCCCAGCACAGCCAGAGATC...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCACGCTACGGGATCTCTaGCTGTGCTGGGCCATCTCC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLTLRDL*LCWAIS
Trigger: GGAGATGGCCCAGCACAGCCAGAGATCCCGTAGCGT...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGGGTCCCGGTGGGACTaGCCCGGGGCGTGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYGSRWD*PGACAE
Trigger: CTCTGCACACGCCCCGGGCCAGTCCCACCGGGACCC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGAACCAGGTACCTGGGAAAGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACCGACCTTCTGACCCGTaGTGCAGTGGACCCCGAGTT +
Preference number: 4 (lower is better)
Translates to: RTRYLGKPESRSHERRADRPSDP*CSGPRV
Trigger: AACTCGGGGTCCACTGCATCACGGGTCAGAAGGTCG...GTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCTTTCCCAGGTACCTGGTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR TCA 90 bp AGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCCGTGTGGTGAAACCCGGTTCACGATCTTaGTGGCGACCTTCTGACCCG +
Preference number: 4 (lower is better)
Translates to: SLRAGPMSAGQTASRVVKPGSRS*WRPSDP
Trigger: CGGGTCAGAAGGTCGCCATCAAGATCGTGAACCGGG...TTTCACCACACGGGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR TCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCATGTGGGTGTTCGATaGGCTTCAGGATGGCGATCT +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPHVGVR*ASGWRS
Trigger: AGATCGCCATCCTGAAGCTCATCGAACACCCACATG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR GCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCAGCCCAGTGATGCCATaGTCTCTAGGACGTCGGGGT +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLSPVMP*SLGRRG
Trigger: ACCCCGACGTCCTAGAGAGCATGGCATCACTGGGCT...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGACCGGACTCCTTGGGCTaGTTAGAGGGCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRPDSLG*LEGWRT
Trigger: TGTCCTCCAGCCCTCTAAGCAGCCCAAGGAGTCCGG...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR GCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCTGGCCCGGGGCGTGTaGAGAGGCGAGTGCAAGGGG +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQLARGV*RGECKG
Trigger: CCCCTTGCACTCGCCTCTGCACACGCCCCGGGCCAG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGGCATGGACGATGTCTaGTTTGATGCTGCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPGMDDV*FDAAER
Trigger: CCTCTCAGCAGCATCAAAGCAGACATCGTCCATGCC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCAGGGCTGGTCATGAGTaGTCAGGAGCTGTGCCTGGA +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLRAGHE*SGAVPG
Trigger: TCCAGGCACAGCTCCTGAGCACTCATGACCAGCCCT...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCATGAAGTGGGGCATGTaGAAGACGCCCCGTTTCACC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSMKWGM*KTPRFT
Trigger: GGTGAAACGGGGCGTCTTCCACATGCCCCACTTCAT...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGATGGCAGGCTCCGCATaGCTACCCGGCGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGMAGSA*LPGGQG
Trigger: CCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCAT...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAATGGCAGGCTCCGCATaGCTACCCGGCGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGMAGSA*LPGGQG
Trigger: CCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCAT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGACAGCTCTCCGTTGGATaGCAGGCTCCGCATGGCTAC +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRQLSVG*QAPHGY
Trigger: GTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTG...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACACTGTGACTCAGGCTaGGGATCGACAGAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAHCDSG*GSTERH
Trigger: ATGCCTTTCTGTCGATCCCCAGCCTGAGTCACAGTG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCTGCAGGCTTCGGGGTaGGGCACCAGCAGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYLQASG*GTSRPG
Trigger: ACCCGGCCTGCTGGTGCCCCACCCCGAAGCCTGCAG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCATGTGGGTGTTCGATaGGCTTCAGGATGGCGATCT +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPHVGVR*ASGWRS
Trigger: AGATCGCCATCCTGAAGCTCATCGAACACCCACATG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp CTGGGAAAGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCCGTGTAGACGTCGTGGAGCTTaGGGACATGTGGGTGTTCGA +
Preference number: 4 (lower is better)
Translates to: LGKPESRSHERRADSFPCRRRGA*GHVGVR
Trigger: TCGAACACCCACATGTCCTCAAGCTCCACGACGTCT...ACACGGGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCTTTCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR TCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTGCCTCTCGCGGTCCCTaGAGCAGCCCAGTGATGCCA +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRASRGP*SSPVMP
Trigger: TGGCATCACTGGGCTGCTTCAGGGACCGCGAGAGGC...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCTGAAGCTGGTCTGTaGCAGCACACTGTGACTCAG +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLPEAGL*QHTVTQ
Trigger: CTGAGTCACAGTGTGCTGTCACAGACCAGCTTCAGG...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGACCTTGTACTCGGCCCTaGAGCTGGTCTGTGACAGCA +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRPCTRP*SWSVTA
Trigger: TGCTGTCACAGACCAGCTTCAGGGCCGAGTACAAGG...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGGCATGGACGATGTCTaGTTTGATGCTGCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPGMDDV*FDAAER
Trigger: CCTCTCAGCAGCATCAAAGCAGACATCGTCCATGCC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCTCTGGAGGAATGAAGTaGGGCATGTGGAAGACGCCC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLSGGMK*GMWKTP
Trigger: GGGCGTCTTCCACATGCCCCACTTCATTCCTCCAGA...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCGAGGCTCTGGCAATCTaGAGGAATGAAGTGGGGCAT +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSEALAI*RNEVGH
Trigger: ATGCCCCACTTCATTCCTCCAGATTGCCAGAGCCTC...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCCAAGGCCCGTCGGGTaGGTACAGGGGAGCCACCAC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYPRPVG*VQGSHH
Trigger: GTGGTGGCTCCCCTGTACCCACCCGACGGGCCTTGG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTCCAGCAGGCCGGGTCTaGGCCCCGTTCTTCTCGTCT +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRPAGRV*APFFSS
Trigger: AGACGAGAAGAACGGGGCCCAGACCCGGCCTGCTGG...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGGTTGGGCACGGCCTGTaGAGCCCCATCCCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQVGHGL*SPIPAG
Trigger: CCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAAC...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGCCTCTCGCGGTCCCTaGAGCAGCCCAGTGATGCCA +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGASRGP*SSPVMP
Trigger: TGGCATCACTGGGCTGCTTCAGGGACCGCGAGAGGC...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGGGTCGCCGCTTCCCGTaGCGGCTCAGCATGGGAGAA +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGGRRFP*RLSMGE
Trigger: TTCTCCCATGCTGAGCCGTCACGGGAAGCGGCGACC...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
60% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCCGTGGAGGCTCCACTaGCGCTACGGGATCTCTGGC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYPWRLH*RYGISG
Trigger: GCCAGAGATCCCGTAGCGTCAGTGGAGCCTCCACGG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACCGTGGAGGCTCCACTaGCGCTACGGGATCTCTGGC +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGPWRLH*RYGISG
Trigger: GCCAGAGATCCCGTAGCGTCAGTGGAGCCTCCACGG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACTGCATCTTGCGCCGGTaGAAGCGAGGGGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYCILRR*KRGEPR
Trigger: CCTGGGCTCCCCTCGCTTTCACCGGCGCAAGATGCA...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCTTTGTCCAAGGAGATaGAGTTCCCGAACCAGGAGC +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLLCPRR*SSRTRS
Trigger: GCTCCTGGTTCGGGAACTTCATCTCCTTGGACAAAG...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGGAGGGCTGGTCATaGGTGCTCAGGAGCTGTGCC +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRTEGWS*VLRSCA
Trigger: GGCACAGCTCCTGAGCACTCATGACCAGCCCTCCGT...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCAAACTCCTGACCTTGTaGTTTGCCCACCTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSKLLTL*FAHLSF
Trigger: GAAGCTGAGGTGGGCAAATCACAAGGTCAGGAGTTT...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000590333.5
CDS-3UTR GCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCCCACATATTGGGCGTaGTGGGGTGGGTGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGPTYWA*WGGWGW
Trigger: CCACCCCCACCCACCCCAGCACGCCCAATATGTGGG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR GCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTGGTTCTCCTCCTCACTaGGCAGCTCGCGATGCAGCC +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRGSPPH*AARDAA
Trigger: GGCTGCATCGCGAGCTGCGCAGTGAGGAGGAGAACC...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACCCGTTCTTCTCGTCTaGCAGGGCCTGCACGGAGGG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGPVLLV*QGLHGG
Trigger: CCCTCCGTGCAGGCCCTGGCAGACGAGAAGAACGGG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCCCGTTCTTCTCGTCTaGCAGGGCCTGCACGGAGGG +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQPVLLV*QGLHGG
Trigger: CCCTCCGTGCAGGCCCTGGCAGACGAGAAGAACGGG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCCTGACCTTGTGATTTaGCCACCTCAGCTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPPDLVI*PPQLPK
Trigger: TTTGGGAAGCTGAGGTGGGCAAATCACAAGGTCAGG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAACCACCCCCAGTTaGGCACGGCCTGTGGAGCCC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYRTTPS*ARPVEP
Trigger: GGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCT...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCCGTACAGAAGGTCGTaGGGGGAGGACCAGGGGAGG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGPYRRS*GEDQGR
Trigger: CCTCCCCTGGTCCTCCCCCCACGACCTTCTGTACGG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCCGTGTGGTGAAACCAGAACCAGGTACCTaGGAAAGCCTGAGAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SLRAGPMSAGQTASRVVKPEPGT*ESLRAG
Trigger: ACCTGCTCTCAGGCTTTCCCAGGTACCTGGTTCTGG...TTTCACCACACGGGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR TCA 90 bp AGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCCGTGTGGTGAAACATGTGGGTGTTCGATaGGCTTCAGGATGGCGATCT +
Preference number: 4 (lower is better)
Translates to: SLRAGPMSAGQTASRVVKHVGVR*ASGWRS
Trigger: AGATCGCCATCCTGAAGCTCATCGAACACCCACATG...TTTCACCACACGGGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR TCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTAGCCCCCGGCTCCGGTaGAAAGGAAAAGACCGGACT +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRSPRLR*KGKDRT
Trigger: AGTCCGGTCTTTTCCTTTTCACCGGAGCCGGGGGCT...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACACGGAGGGCTGGTCATaGGTGCTCAGGAGCTGTGCC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYTEGWS*VLRSCA
Trigger: GGCACAGCTCCTGAGCACTCATGACCAGCCCTCCGT...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCGGGATCTCTGGCTGTaGTGGGCCATCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYRDLWL*WAISKA
Trigger: GGCCTTGGAGATGGCCCAGCACAGCCAGAGATCCCG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCGGGATCTCTGGCTGTaGTGGGCCATCTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQRDLWL*WAISKA
Trigger: GGCCTTGGAGATGGCCCAGCACAGCCAGAGATCCCG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTGAACCAGGAGCGTTTTaGCAGCTCCGGGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIREPGAF*QLRGGL
Trigger: GAGTCCTCCCCGGAGCTGGCAAAACGCTCCTGGTTC...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAGGTCTCTGTGGCAGATaGAGTAGCTGTGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRGLCGR*SSCGRS
Trigger: ACTTCTGCCACAGCTACTCCATCTGCCACAGAGACC...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp AGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCCGTGTGGTGAAAGGTCTCTGTGGCAGATaGAGTAGCTGTGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: SLRAGPMSAGQTASRVVKGLCGR*SSCGRS
Trigger: ACTTCTGCCACAGCTACTCCATCTGCCACAGAGACC...TTTCACCACACGGGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGGTCCAGCTCTCCGTTaGATGGCAGGCTCCGCATGG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGGPALR*MAGSAW
Trigger: CCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACC...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGGGTCCAGCTCTCCGTTaGATGGCAGGCTCCGCATGG +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQGPALR*MAGSAW
Trigger: CCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACC...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCATGGACTTCCGCTCTaGTCGCCGCTTCCCGTGACG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGHGLPL*SPLPVT
Trigger: CGTCACGGGAAGCGGCGACCAGAGCGGAAGTCCATG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACATGGACTTCCGCTCTaGTCGCCGCTTCCCGTGACG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGHGLPL*SPLPVT
Trigger: CGTCACGGGAAGCGGCGACCAGAGCGGAAGTCCATG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCATGGACTTCCGCTCTaGTCGCCGCTTCCCGTGACG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYHGLPL*SPLPVT
Trigger: CGTCACGGGAAGCGGCGACCAGAGCGGAAGTCCATG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGGCTGCTTAGAGGGCTaGAGGACAGACCCGTGGAGG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYGCLEG*RTDPWR
Trigger: CCTCCACGGGTCTGTCCTCCAGCCCTCTAAGCAGCC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGACACTGTGACTCAGGCTaGGGATCGACAGAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: LPPAESETRTQAGSRETRHCDSG*GSTERH
Trigger: ATGCCTTTCTGTCGATCCCCAGCCTGAGTCACAGTG...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAAGCGGACGGGCTTTTaGAAGACGGAGGGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYKRTGF*KTEGPP
Trigger: TGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTT...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGTCGCGGGGAGGGCTCTaGACCCTCAGAGGAGCTGAT +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQSRGGL*TLRGAD
Trigger: ATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGA...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGATCGCGGGGAGGGCTCTaGACCCTCAGAGGAGCTGAT +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGSRGGL*TLRGAD
Trigger: ATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGA...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTGAGGGGTCCCGTTGGTaGCCAGGAGCTTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIREGSRW*PGASCP
Trigger: AGGACAAGAAGCTCCTGGCCACCAACGGGACCCCTC...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTGCAGAGGGGTCCCGTTaGTGGCCAGGAGCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRAEGSR*WPGASC
Trigger: ACAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGC...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCGACCTTCTGACCCGTaGTGCAGTGGACCCCGAGTT +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGRPSDP*CSGPRV
Trigger: AACTCGGGGTCCACTGCATCACGGGTCAGAAGGTCG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCGACCTTCTGACCCGTaGTGCAGTGGACCCCGAGTT +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQRPSDP*CSGPRV
Trigger: AACTCGGGGTCCACTGCATCACGGGTCAGAAGGTCG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCCCGGTTCACGATCTTaGTGGCGACCTTCTGACCCG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYPGSRS*WRPSDP
Trigger: CGGGTCAGAAGGTCGCCATCAAGATCGTGAACCGGG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCTACCAAGGATGTTTCTaGATTTGCTCCAGACTGAGC +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSYQGCF*ICSRLS
Trigger: GCTCAGTCTGGAGCAAATTCAGAAACATCCTTGGTA...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTTGTGACAGCACACTGTaGCTCAGGCTGGGGATCGAC +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRCDSTL*LRLGID
Trigger: GTCGATCCCCAGCCTGAGTCACAGTGTGCTGTCACA...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGACCCTCAGAGGAGCTaGTGTCCACCTGGAAGCGGA +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGDPQRS*CPPGSG
Trigger: TCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTC...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACCGGACTCCTTGGGCTaGTTAGAGGGCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGPDSLG*LEGWRT
Trigger: TGTCCTCCAGCCCTCTAAGCAGCCCAAGGAGTCCGG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCCGGACTCCTTGGGCTaGTTAGAGGGCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQPDSLG*LEGWRT
Trigger: TGTCCTCCAGCCCTCTAAGCAGCCCAAGGAGTCCGG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGAACCAGGAGCGTTTTaGCAGCTCCGGGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYEPGAF*QLRGGL
Trigger: GAGTCCTCCCCGGAGCTGGCAAAACGCTCCTGGTTC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGTGGAGCCCCATCCCTaGAGGGCAAGGCCGGTTTTT +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYVEPHP*RARPVF
Trigger: AAAAACCGGCCTTGCCCTGCAGGGATGGGGCTCCAC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGTGGAGCCCCATCCCTaGAGGGCAAGGCCGGTTTTT +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGVEPHP*RARPVF
Trigger: AAAAACCGGCCTTGCCCTGCAGGGATGGGGCTCCAC...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCAGCTCTCCGTTGGATaGCAGGCTCCGCATGGCTAC +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQQLSVG*QAPHGY
Trigger: GTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGGATCTCTGGCTGTGCTaGGCCATCTCCAAGGCCCGT +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQDLWLC*AISKAR
Trigger: ACGGGCCTTGGAGATGGCCCAGCACAGCCAGAGATC...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCATCGACAGAAAGGCATaGACGATGTCTGCTTTGATG +
Preference number: 4 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSIDRKA*TMSALM
Trigger: CATCAAAGCAGACATCGTCCATGCCTTTCTGTCGAT...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGGAGGGGTCCCGTTGGTaGCCAGGAGCTTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQEGSRW*PGASCP
Trigger: AGGACAAGAAGCTCCTGGCCACCAACGGGACCCCTC...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCATCCCGACATGTTCCTTaGGCCTTATTTACAGATTCA +
Preference number: 4 (lower is better)
Translates to: PRTTPSWARPVEPHPCRASRHVP*ALFTDS
Trigger: TGAATCTGTAAATAAGGCCCAAGGAACATGTCGGGA...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGTTGATGGCGACCTTCTaGCCCGTGATGCAGTGGACC +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGLMATF*PVMQWT
Trigger: GGTCCACTGCATCACGGGTCAGAAGGTCGCCATCAA...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGATTGATGGCGACCTTCTaGCCCGTGATGCAGTGGACC +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGLMATF*PVMQWT
Trigger: GGTCCACTGCATCACGGGTCAGAAGGTCGCCATCAA...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGTGTGACAGCACACTGTaGCTCAGGCTGGGGATCGAC +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGCDSTL*LRLGID
Trigger: GTCGATCCCCAGCCTGAGTCACAGTGTGCTGTCACA...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTCCTGAAGCTGGTCTGTaGCAGCACACTGTGACTCAG +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRPEAGL*QHTVTQ
Trigger: CTGAGTCACAGTGTGCTGTCACAGACCAGCTTCAGG...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCCTTGTACTCGGCCCTaGAGCTGGTCTGTGACAGCA +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGPCTRP*SWSVTA
Trigger: TGCTGTCACAGACCAGCTTCAGGGCCGAGTACAAGG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAAGCCCAGTGATGCCATaGTCTCTAGGACGTCGGGGT +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGSPVMP*SLGRRG
Trigger: ACCCCGACGTCCTAGAGAGCATGGCATCACTGGGCT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGAGCCCAGTGATGCCATaGTCTCTAGGACGTCGGGGT +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGSPVMP*SLGRRG
Trigger: ACCCCGACGTCCTAGAGAGCATGGCATCACTGGGCT...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACGAGAAGGCAGCGTCTaGGTTTTGGAAGTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGREGSV*VLEVGE
Trigger: CTCCCCGACTTCCAAAACGCAGACGCTGCCTTCTCG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAAGGGCTGGTCATGAGTaGTCAGGAGCTGTGCCTGGA +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGRAGHE*SGAVPG
Trigger: TCCAGGCACAGCTCCTGAGCACTCATGACCAGCCCT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTTAACCCCGCCACCATaGCTGGCTAATTTTTGTATT +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPLTPPP*LANFCI
Trigger: AATACAAAAATTAGCCAGGCATGGTGGCGGGGTTAA...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACTGCTCAGGACTTCCATaGACTTCCGCTCTGGTCGCC +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYCSGLP*TSALVA
Trigger: GGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAGCA...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCATCGACAGAAAGGCATaGACGATGTCTGCTTTGATG +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLIDRKA*TMSALM
Trigger: CATCAAAGCAGACATCGTCCATGCCTTTCTGTCGAT...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGAGCTGATGTCCACCTaGAAGCGGACGGGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYELMST*KRTGFW
Trigger: CCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGGAGCTGATGTCCACCTaGAAGCGGACGGGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGELMST*KRTGFW
Trigger: CCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCGACATGTTCCTTaGGCCTTATTTACAGATTCA +
Preference number: 4 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPSRHVP*ALFTDS
Trigger: TGAATCTGTAAATAAGGCCCAAGGAACATGTCGGGA...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGAGACGTCGTGGAGCTTaGGGACATGTGGGTGTTCGA +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGRRRGA*GHVGVR
Trigger: TCGAACACCCACATGTCCTCAAGCTCCACGACGTCT...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTCTTTGTCCAAGGAGATaGAGTTCCCGAACCAGGAGC +
Preference number: 4 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRLCPRR*SSRTRS
Trigger: GCTCCTGGTTCGGGAACTTCATCTCCTTGGACAAAG...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACCTGAAGCTGGTCTGTaGCAGCACACTGTGACTCAG +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGPEAGL*QHTVTQ
Trigger: CTGAGTCACAGTGTGCTGTCACAGACCAGCTTCAGG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCTGCCGAAGTCTGCAATaGGGATGTTGTTTTTCTCAT +
Preference number: 4 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLCRSLQ*GCCFSH
Trigger: ATGAGAAAAACAACATCCGCATTGCAGACTTCGGCA...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAAGCGCAGACACAATCTaGCGGAAGAACTTTCGGGCC +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGSADTI*RKNFRA
Trigger: GGCCCGAAAGTTCTTCCGCCAGATTGTGTCTGCGCT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAATGAAGTGGGGCATGTaGAAGACGCCCCGTTTCACC +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGMKWGM*KTPRFT
Trigger: GGTGAAACGGGGCGTCTTCCACATGCCCCACTTCAT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGTCTGGAGGAATGAAGTaGGGCATGTGGAAGACGCCC +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQSGGMK*GMWKTP
Trigger: GGGCGTCTTCCACATGCCCCACTTCATTCCTCCAGA...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR TCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCTTTGTCCAAGGAGATaGAGTTCCCGAACCAGGAGC +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQLCPRR*SSRTRS
Trigger: GCTCCTGGTTCGGGAACTTCATCTCCTTGGACAAAG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACTGGTCTCAAACTCCTaGCCTTGTGATTTGCCCACC +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGLVSNS*PCDLPT
Trigger: GGTGGGCAAATCACAAGGTCAGGAGTTTGAGACCAG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000590333.5
CDS-3UTR GCA 90 bp AGGTACCTGGGAAAGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCTGCCGAAGTCTGCAATaGGGATGTTGTTTTTCTCAT +
Preference number: 4 (lower is better)
Translates to: RYLGKPESRSHERRADSFCRSLQ*GCCFSH
Trigger: ATGAGAAAAACAACATCCGCATTGCAGACTTCGGCA...GAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCTTTCCCAGGTACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR GCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGGCATGGACGATGTCTaGTTTGATGCTGCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYGMDDV*FDAAER
Trigger: CCTCTCAGCAGCATCAAAGCAGACATCGTCCATGCC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACGGTCTCTGTGGCAGATaGAGTAGCTGTGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYGLCGR*SSCGRS
Trigger: ACTTCTGCCACAGCTACTCCATCTGCCACAGAGACC...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGGCTCTGGCAATCTaGAGGAATGAAGTGGGGCAT +
Preference number: 4 (lower is better)
Translates to: ESETRTQAGSRETRIPSGEALAI*RNEVGH
Trigger: ATGCCCCACTTCATTCCTCCAGATTGCCAGAGCCTC...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACCACTGTGACTCAGGCTaGGGATCGACAGAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: DAGRITRNQNSFRRANPYHCDSG*GSTERH
Trigger: ATGCCTTTCTGTCGATCCCCAGCCTGAGTCACAGTG...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR TCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGTACCAAGGATGTTTCTaGATTTGCTCCAGACTGAGC +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQYQGCF*ICSRLS
Trigger: GCTCAGTCTGGAGCAAATTCAGAAACATCCTTGGTA...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGATCGACAGAAAGGCATaGACGATGTCTGCTTTGATG +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGIDRKA*TMSALM
Trigger: CATCAAAGCAGACATCGTCCATGCCTTTCTGTCGAT...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR GCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGTGCCGAAGTCTGCAATaGGGATGTTGTTTTTCTCAT +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGCRSLQ*GCCFSH
Trigger: ATGAGAAAAACAACATCCGCATTGCAGACTTCGGCA...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CCA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGTATATCATCTTTTCTTaGTTCTCCTCCTCACTGCGC +
Preference number: 4 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGYIIFS*FSSSLR
Trigger: GCGCAGTGAGGAGGAGAACCAAGAAAAGATGATATA...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CCA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGTATATCATCTTTTCTTaGTTCTCCTCCTCACTGCGC +
Preference number: 4 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQYIIFS*FSSSLR
Trigger: GCGCAGTGAGGAGGAGAACCAAGAAAAGATGATATA...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CCA 90 bp CTAGGACGTCGGGGTCCAGCTCTCCGTTGGATGGCAGGCTCCGCATaGCTACCCGGCGGCCAGGGGCTGGCTCCAGGCACGGGTCTGGCT +
Preference number: 5 (lower is better)
Translates to: LGRRGPALRWMAGSA*LPGGQGLAPGTGLA
Trigger: AGCCAGACCCGTGCCTGGAGCCAGCCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCGACGTCCTAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CCA 90 bp TCCGTTGGATGGCAGGCTCCGCATGGCTACCCGGCGGCCAGGGGCTaGCTCCAGGCACGGGTCTGGCTCGTGTTTCCCGCCTCTGGGAGT +
Preference number: 5 (lower is better)
Translates to: SVGWQAPHGYPAARG*LQARVWLVFPASGS
Trigger: ACTCCCAGAGGCGGGAAACACGAGCCAGACCCGTGCCTGGAGCCAGCCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326848.7
CDS-3UTR CAA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGACGACATGGTGCCCTaGGTCCCGGCCCGACCGGTC +
Preference number: 5 (lower is better)
Translates to: PRTTPSWARPVEPHPCRADDMVP*VPARPV
Trigger: GACCGGTCGGGCCGGGACCAAGGGCACCATGTCGTC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CAA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAGGCAGCGTCTGCGTTTaGGAAGTCGGGGAGCCCCCG +
Preference number: 5 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAGSVCV*EVGEPP
Trigger: CGGGGGCTCCCCGACTTCCAAAACGCAGACGCTGCC...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGAAGCGGACGGGCTTTaGGAAGACGGAGGGGCCGCC +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPEADGL*EDGGAA
Trigger: GGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCCCCGGGAAGAGGGGGTaGGGGACGACACAGGGACAG +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPPGKRG*GTTQGQ
Trigger: CTGTCCCTGTGTCGTCCCCAACCCCCTCTTCCCGGG...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
69% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS TCA 90 bp AGGCCCGTCGGGTGGGTACAGGGGAGCCACCACCCCCGGCATCGGTaGTGCTCAGGACTTCCATGGACTTCCGCTCTGGTCGCCGCTTCC +
Preference number: 5 (lower is better)
Translates to: RPVGWVQGSHHPRHR*CSGLPWTSALVAAS
Trigger: GGAAGCGGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAGCATCACCGATGCCGGGGGTGGTGGCTCCCCTGTACCCACCCGACGGGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000586626.1
ENST00000590333.5
ENST00000591774.5
CDS CCA 90 bp CCAGTGATGCCATGCTCTCTAGGACGTCGGGGTCCAGCTCTCCGTTaGATGGCAGGCTCCGCATGGCTACCCGGCGGCCAGGGGCTGGCT +
Preference number: 5 (lower is better)
Translates to: PVMPCSLGRRGPALR*MAGSAWLPGGQGLA
Trigger: AGCCAGCCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCGACGTCCTAGAGAGCATGGCATCACTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CCA 90 bp GTAGATGCCACCACCTCCGCTGCCGTCCCGTCGCGGGGAGGGCTCTaGACCCTCAGAGGAGCTGATGTCCACCTGGAAGCGGACGGGCTT +
Preference number: 5 (lower is better)
Translates to: VDATTSAAVPSRGGL*TLRGADVHLEADGL
Trigger: AAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGACGGGACGGCAGCGGAGGTGGTGGCATCTAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CCA 90 bp CAGGGGCTGGCTCCAGGCACGGGTCTGGCTCGTGTTTCCCGCCTCTaGGAGTCCTGGACTCCTAGCTTAGCCCCTCCTGCCTCTGACCCC +
Preference number: 5 (lower is better)
Translates to: QGLAPGTGLARVSRL*ESWTPSLAPPASDP
Trigger: GGGGTCAGAGGCAGGAGGGGCTAAGCTAGGAGTCCAGGACTCCCAGAGGCGGGAAACACGAGCCAGACCCGTGCCTGGAGCCAGCCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000326848.7
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCGGGTCCAGCTCTCCGTaGGATGGCAGGCTCCGCATG +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPGSSSP*DGRLRM
Trigger: CATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCC...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCGGCAGCGTCTGCGTTTaGGAAGTCGGGGAGCCCCCG +
Preference number: 5 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSGSVCV*EVGEPP
Trigger: CGGGGGCTCCCCGACTTCCAAAACGCAGACGCTGCC...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGGGGTCCAGCTCTCCGTaGGATGGCAGGCTCCGCATG +
Preference number: 5 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPGSSSP*DGRLRM
Trigger: CATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCC...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCGAAGCGGACGGGCTTTaGGAAGACGGAGGGGCCGCC +
Preference number: 5 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLEADGL*EDGGAA
Trigger: GGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTC...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGCGAGTCCCTAGCCCGTaGCCTCTCAGGAACCCTGGC +
Preference number: 5 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPRVPSP*PLRNPG
Trigger: GCCAGGGTTCCTGAGAGGCAACGGGCTAGGGACTCG...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326848.7
CDS-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGATAGGGGCCCACATATaGGGCGTGCTGGGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPIGAHI*GVLGWV
Trigger: CACCCACCCCAGCACGCCCAATATGTGGGCCCCTAT...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CAA 90 bp CGACACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCGGGTCCAGCTCTCCGTaGGATGGCAGGCTCCGCATG +
Preference number: 5 (lower is better)
Translates to: RHRDRGPCPDLLSHPNQLGSSSP*DGRLRM
Trigger: CATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCC...GAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCAGCAGCTGGCGGAGGTaGTCGTCATCAAAGGGCAGA +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPSSWRR*SSSKGR
Trigger: TCTGCCCTTTGATGACGACAACCTCCGCCAGCTGCT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CAA 90 bp AGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTGTTGCGGATGGAGTaGAGACGACTCCTCCAGGCG +
Preference number: 5 (lower is better)
Translates to: RDRGPCPDLLSHPNQLPSLLRME*RRLLQA
Trigger: CGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAG...GGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CCA 90 bp ACCCCCGGCATCGGTGATGCTCAGGACTTCCATGGACTTCCGCTCTaGTCGCCGCTTCCCGTGACGGCTCAGCATGGGAGAATCCACACG +
Preference number: 5 (lower is better)
Translates to: TPGIGDAQDFHGLPL*SPLPVTAQHGRIHT
Trigger: CGTGTGGATTCTCCCATGCTGAGCCGTCACGGGAAGCGGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAGCATCACCGATGCCGGGGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000586626.1
ENST00000590333.5
ENST00000591774.5
CDS-3UTR CAA 90 bp GGTACCTGGGAAAGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCAACTTTCGGGCCTCCTaGGGCGTCAGTCTCCCCTTC +
Preference number: 5 (lower is better)
Translates to: GTWESLRAGPMSAGQTASNFRAS*GVSLPF
Trigger: GAAGGGGAGACTGACGCCCAAGGAGGCCCGAAAGTT...GGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCTTTCCCAGGTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR CAA 90 bp TTGCCGCCGGCGGAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAAACTTTCGGGCCTCCTaGGGCGTCAGTCTCCCCTTC +
Preference number: 5 (lower is better)
Translates to: LPPAESETRTQAGSRETRNFRAS*GVSLPF
Trigger: GAAGGGGAGACTGACGCCCAAGGAGGCCCGAAAGTT...TCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTCCGCCGGCGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309383.6
CDS-3UTR CAA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGGGCAGCGTCTGCGTTTaGGAAGTCGGGGAGCCCCCG +
Preference number: 5 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQGSVCV*EVGEPP
Trigger: CGGGGGCTCCCCGACTTCCAAAACGCAGACGCTGCC...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCTGGACGATGTCTGCTTaGATGCTGCTGAGAGGTTTG +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPWTMSA*MLLRGL
Trigger: CAAACCTCTCAGCAGCATCAAAGCAGACATCGTCCA...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTGGCAGAGGGGTCCCGTaGGTGGCCAGGAGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRGRGVP*VARSFL
Trigger: CAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGCC...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGACCCGGGAAGAGGGGGTaGGGGACGACACAGGGACAG +
Preference number: 5 (lower is better)
Translates to: ESETRTQAGSRETRIPSGPGKRG*GTTQGQ
Trigger: CTGTCCCTGTGTCGTCCCCAACCCCCTCTTCCCGGG...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTCGAACCAGGAGCGTTTaGCCAGCTCCGGGGAGGACT +
Preference number: 5 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRRTRSV*PAPGRT
Trigger: AGTCCTCCCCGGAGCTGGCAAAACGCTCCTGGTTCG...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCAATGCTGCTGAGAGGTTaGTCCTTTAGCACGAGGAAT +
Preference number: 5 (lower is better)
Translates to: PRTTPSWARPVEPHPCRAMLLRG*SFSTRN
Trigger: ATTCCTCGTGCTAAAGGACAAACCTCTCAGCAGCAT...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCATGCTGCTGAGAGGTTaGTCCTTTAGCACGAGGAAT +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPMLLRG*SFSTRN
Trigger: ATTCCTCGTGCTAAAGGACAAACCTCTCAGCAGCAT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTGGACGATGTCTGCTTaGATGCTGCTGAGAGGTTTG +
Preference number: 5 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPWTMSA*MLLRGL
Trigger: CAAACCTCTCAGCAGCATCAAAGCAGACATCGTCCA...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGGCAGAGGGGTCCCGTaGGTGGCCAGGAGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: ESETRTQAGSRETRIPSGGRGVP*VARSFL
Trigger: CAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGCC...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGGGCAGAGGGGTCCCGTaGGTGGCCAGGAGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGGRGVP*VARSFL
Trigger: CAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGCC...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
60% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CCTAGAACCACCCCCAGTTGGGCACGGCCTGTGGAGCCCCATCCCTGCAGGGCACTCCCGACATGTTCCTaGGGCCTTATTTACAGATTC +
Preference number: 5 (lower is better)
Translates to: PRTTPSWARPVEPHPCRALPTCS*GLIYRF
Trigger: GAATCTGTAAATAAGGCCCAAGGAACATGTCGGGAG...TGCCCTGCAGGGATGGGGCTCCACAGGCCGTGCCCAACTGGGGGTGGTTCTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTCTGTTGCGGATGGAGTaGAGACGACTCCTCCAGGCG +
Preference number: 5 (lower is better)
Translates to: RTQAGSRETRIPSGEQIRLLRME*RRLLQA
Trigger: CGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAG...ACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCGAACCAGGAGCGTTTaGCCAGCTCCGGGGAGGACT +
Preference number: 5 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGRTRSV*PAPGRT
Trigger: AGTCCTCCCCGGAGCTGGCAAAACGCTCCTGGTTCG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGATGCTGCTGAGAGGTTaGTCCTTTAGCACGAGGAAT +
Preference number: 5 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPMLLRG*SFSTRN
Trigger: ATTCCTCGTGCTAAAGGACAAACCTCTCAGCAGCAT...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAAACTTTCGGGCCTCCTaGGGCGTCAGTCTCCCCTTC +
Preference number: 5 (lower is better)
Translates to: ESETRTQAGSRETRIPSGNFRAS*GVSLPF
Trigger: GAAGGGGAGACTGACGCCCAAGGAGGCCCGAAAGTT...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CAA 90 bp AGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCCCTCCCCAGGATGTTTCTGAATTaGCTCCAGACTGAGCCTTTT +
Preference number: 5 (lower is better)
Translates to: RGPCPDLLSHPNQLPSLPRMFLN*LQTEPF
Trigger: AAAAGGCTCAGTCTGGAGCAAATTCAGAAACATCCT...GGGGAGGGACGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CAA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCTGTTGCGGATGGAGTaGAGACGACTCCTCCAGGCG +
Preference number: 5 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQLLRME*RRLLQA
Trigger: CGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAG...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CACAGGGACAGAGGGCCCTGTCCGGATCTGCTAAGCCACCCCAACCAGCTCCCGTCTGCAATGCGGATGTaGTTTTTCTCATCCAAAAGC +
Preference number: 5 (lower is better)
Translates to: HRDRGPCPDLLSHPNQLPSAMRM*FFSSKS
Trigger: GCTTTTGGATGAGAAAAACAACATCCGCATTGCAGA...CGGGAGCTGGTTGGGGTGGCTTAGCAGATCCGGACAGGGCCCTCTGTCCCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CAA 90 bp GACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGCAGCTGGCGGAGGTaGTCGTCATCAAAGGGCAGA +
Preference number: 5 (lower is better)
Translates to: DAGRITRNQNSFRRANPYSSWRR*SSSKGR
Trigger: TCTGCCCTTTGATGACGACAACCTCCGCCAGCTGCT...GTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CAA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGAAAAGACCGGACTCCTaGGGCTGCTTAGAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGKRPDS*GCLEGW
Trigger: CCAGCCCTCTAAGCAGCCCAAGGAGTCCGGTCTTTT...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAAAGACCGGACTCCTaGGGCTGCTTAGAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQKRPDS*GCLEGW
Trigger: CCAGCCCTCTAAGCAGCCCAAGGAGTCCGGTCTTTT...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp GGTACCTGGGAAAGCCTGAGAGCAGGTCCCATGAGCGCCGGGCAGACAGCTTCCTCTGCAATGCGGATGTaGTTTTTCTCATCCAAAAGC +
Preference number: 5 (lower is better)
Translates to: GTWESLRAGPMSAGQTASSAMRM*FFSSKS
Trigger: GCTTTTGGATGAGAAAAACAACATCCGCATTGCAGA...GGAAGCTGTCTGCCCGGCGCTCATGGGACCTGCTCTCAGGCTTTCCCAGGTACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592539.6
CDS-3UTR CAA 90 bp GAATCAGAGACACGGACGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGATGGACGATGTCTGCTTaGATGCTGCTGAGAGGTTTG +
Preference number: 5 (lower is better)
Translates to: ESETRTQAGSRETRIPSGWTMSA*MLLRGL
Trigger: CAAACCTCTCAGCAGCATCAAAGCAGACATCGTCCA...TCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCGTCCGTGTCTCTGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp ACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAAGGTCGTGGGGGCTCCCGACATGTTCCTaGGGCCTTATTTACAGATTC +
Preference number: 5 (lower is better)
Translates to: TRNQNSFRRANPYRRSWGLPTCS*GLIYRF
Trigger: GAATCTGTAAATAAGGCCCAAGGAACATGTCGGGAG...CCCCCACGACCTTCTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS-3UTR CAA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGTCTGCAATGCGGATGTaGTTTTTCTCATCCAAAAGC +
Preference number: 5 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQSAMRM*FFSSKS
Trigger: GCTTTTGGATGAGAAAAACAACATCCGCATTGCAGA...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS-3UTR CAA 90 bp CGCAGGCAGGATCACGCGAAACCAGAATTCCTTCCGGAGAGCAAATCCGTACAGAGGATGTTTCTGAATTaGCTCCAGACTGAGCCTTTT +
Preference number: 5 (lower is better)
Translates to: RRQDHAKPEFLPESKSVQRMFLN*LQTEPF
Trigger: AAAAGGCTCAGTCTGGAGCAAATTCAGAAACATCCT...CTGTACGGATTTGCTCTCCGGAAGGAATTCTGGTTTCGCGTGATCCTGCCTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000309383.6
ENST00000590333.5
CDS CCA 72 bp TGGCAGGCTCCGCATGGCTACCCGGCGGCCAGGGGCTaGCTCCAGGCACGGGTCTGGCTCGTGTTTCCCGCC +
Preference number: 6 (lower is better)
Translates to: WQAPHGYPAARG*LQARVWLVFPA
Trigger: GGCGGGAAACACGAGCCAGACCCGTGCCTGGAGCCAGCCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CCA 72 bp CGGGGTCCAGCTCTCCGTTGGATGGCAGGCTCCGCATaGCTACCCGGCGGCCAGGGGCTGGCTCCAGGCACG +
Preference number: 6 (lower is better)
Translates to: RGPALRWMAGSA*LPGGQGLAPGT
Trigger: CGTGCCTGGAGCCAGCCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CAA 90 bp CCCAGTGATGCCATGCTCTCTAGGACGTCGGGGTCCAGCTCTCCGTaGGATGGCAGGCTCCGCATGGCTACCCGGCGGCCAGGGGCTGGC +
Preference number: 6 (lower is better)
Translates to: PSDAMLSRTSGSSSP*DGRLRMATRRPGAG
Trigger: GCCAGCCCCTGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCGACGTCCTAGAGAGCATGGCATCACTGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CCA 72 bp ACCACCTCCGCTGCCGTCCCGTCGCGGGGAGGGCTCTaGACCCTCAGAGGAGCTGATGTCCACCTGGAAGCG +
Preference number: 6 (lower is better)
Translates to: TTSAAVPSRGGL*TLRGADVHLEA
Trigger: CGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGACGGGACGGCAGCGGAGGTGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS TCA 72 bp AGCGAGGGGAGCCCAGGAAGCTGTTGCGGATGGAGTTaGGACGACTCCTCCAGGCGGCTCCCCCGACGCCAC +
Preference number: 6 (lower is better)
Translates to: SEGSPGSCCGWS*DDSSRRLPRRH
Trigger: GTGGCGTCGGGGGAGCCGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAGCTTCCTGGGCTCCCCTCGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000588584.1
ENST00000590333.5
CDS CCA 72 bp CCATGCTCTCTAGGACGTCGGGGTCCAGCTCTCCGTTaGATGGCAGGCTCCGCATGGCTACCCGGCGGCCAG +
Preference number: 6 (lower is better)
Translates to: PCSLGRRGPALR*MAGSAWLPGGQ
Trigger: CTGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCGACGTCCTAGAGAGCATGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CAA 72 bp GCCATGCTCTCTAGGACGTCGGGGTCCAGCTCTCCGTaGGATGGCAGGCTCCGCATGGCTACCCGGCGGCCA +
Preference number: 6 (lower is better)
Translates to: AMLSRTSGSSSP*DGRLRMATRRP
Trigger: TGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCGACGTCCTAGAGAGCATGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000585418.1
ENST00000590333.5
ENST00000591774.5
CDS CCA 72 bp GCTCCAGGCACGGGTCTGGCTCGTGTTTCCCGCCTCTaGGAGTCCTGGACTCCTAGCTTAGCCCCTCCTGCC +
Preference number: 6 (lower is better)
Translates to: APGTGLARVSRL*ESWTPSLAPPA
Trigger: GGCAGGAGGGGCTAAGCTAGGAGTCCAGGACTCCCAGAGGCGGGAAACACGAGCCAGACCCGTGCCTGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326848.7
CDS CAA 72 bp AAGCGAGGGGAGCCCAGGAAGCTGTTGCGGATGGAGTaGAGACGACTCCTCCAGGCGGCTCCCCCGACGCCA +
Preference number: 6 (lower is better)
Translates to: KRGEPRKLLRME*RRLLQAAPPTP
Trigger: TGGCGTCGGGGGAGCCGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAGCTTCCTGGGCTCCCCTCGCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000588584.1
ENST00000590333.5
CDS TCA 72 bp GGGTGGGTACAGGGGAGCCACCACCCCCGGCATCGGTaGTGCTCAGGACTTCCATGGACTTCCGCTCTGGTC +
Preference number: 6 (lower is better)
Translates to: GWVQGSHHPRHR*CSGLPWTSALV
Trigger: GACCAGAGCGGAAGTCCATGGAAGTCCTGAGCATCACCGATGCCGGGGGTGGTGGCTCCCCTGTACCCACCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000586626.1
ENST00000590333.5
ENST00000591774.5
CDS TCA 72 bp CCCGTCGCGGGGAGGGCTCTGGACCCTCAGAGGAGCTaGTGTCCACCTGGAAGCGGACGGGCTTTTGGAAGA +
Preference number: 6 (lower is better)
Translates to: PVAGRALDPQRS*CPPGSGRAFGR
Trigger: TCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGACGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CCA 72 bp GAGGGCTCTGGACCCTCAGAGGAGCTGATGTCCACCTaGAAGCGGACGGGCTTTTGGAAGACGGAGGGGCCG +
Preference number: 6 (lower is better)
Translates to: EGSGPSEELMST*KRTGFWKTEGP
Trigger: CGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTCCAGAGCCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CCA 72 bp AGCTCGCCCCACGTGGGTACACGGGTGCAGGGGTCTTaGGGTCTTACTCCTCACTGCGCAGCTCGCGATGCA +
Preference number: 6 (lower is better)
Translates to: SSPHVGTRVQGS*GLTPHCAARDA
Trigger: TGCATCGCGAGCTGCGCAGTGAGGAGTAAGACCCCAAGACCCCTGCACCCGTGTACCCACGTGGGGCGAGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000585418.1
CDS CCA 72 bp GAGGAGCTGATGTCCACCTGGAAGCGGACGGGCTTTTaGAAGACGGAGGGGCCGCCACTGGCCTTGTACTCG +
Preference number: 6 (lower is better)
Translates to: EELMSTWKRTGF*KTEGPPLALYS
Trigger: CGAGTACAAGGCCAGTGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CAA 90 bp TGGACCCTCAGAGGAGCTGATGTCCACCTGGAAGCGGACGGGCTTTaGGAAGACGGAGGGGCCGCCACTGGCCTTGTACTCGGCCCTGAA +
Preference number: 6 (lower is better)
Translates to: WTLRGADVHLEADGL*EDGGAATGLVLGPE
Trigger: TTCAGGGCCGAGTACAAGGCCAGTGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCTGAGGGTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS GCA 72 bp GTCTTGGGGTCTTACTCCTCACTGCGCAGCTCGCGATaGAGCCTCTCGCGGTCCCTGAAGCAGCCCAGTGAT +
Preference number: 6 (lower is better)
Translates to: VLGSYSSLRSSR*SLSRSLKQPSD
Trigger: ATCACTGGGCTGCTTCAGGGACCGCGAGAGGCTGCATCGCGAGCTGCGCAGTGAGGAGTAAGACCCCAAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000585418.1
CDS CAA 72 bp AGAGGAGCTGATGTCCACCTGGAAGCGGACGGGCTTTaGGAAGACGGAGGGGCCGCCACTGGCCTTGTACTC +
Preference number: 6 (lower is better)
Translates to: RGADVHLEADGL*EDGGAATGLVL
Trigger: GAGTACAAGGCCAGTGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CCA 72 bp ATCGGTGATGCTCAGGACTTCCATGGACTTCCGCTCTaGTCGCCGCTTCCCGTGACGGCTCAGCATGGGAGA +
Preference number: 6 (lower is better)
Translates to: IGDAQDFHGLPL*SPLPVTAQHGR
Trigger: TCTCCCATGCTGAGCCGTCACGGGAAGCGGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAGCATCACCGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000586626.1
ENST00000590333.5
ENST00000591774.5
CDS GCA 72 bp TTTTCTTGGTTCTCCTCCTCACTGCGCAGCTCGCGATaGAGCCTCTCGCGGTCCCTGAAGCAGCCCAGTGAT +
Preference number: 6 (lower is better)
Translates to: FSWFSSSLRSSR*SLSRSLKQPSD
Trigger: ATCACTGGGCTGCTTCAGGGACCGCGAGAGGCTGCATCGCGAGCTGCGCAGTGAGGAGGAGAACCAAGAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
ENST00000591774.5
CDS CCA 72 bp CATCATTCCGGGGAGGCAGGTCCTGGTCCTCACAGCTaGGATACCGCTCCTTCCGATCCAAAAGCAGATAAT +
Preference number: 6 (lower is better)
Translates to: HHSGEAGPGPHS*DTAPSDPKADN
Trigger: ATTATCTGCTTTTGGATCGGAAGGAGCGGTATCCCAGCTGTGAGGACCAGGACCTGCCTCCCCGGAATGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000586626.1
ENST00000590333.5
ENST00000591774.5
CDS CAA 90 bp GACAGAAAGGCATGGACGATGTCTGCTTTGATGCTGCTGAGAGGTTaGTCCTTTAGCACGAGGAATATTTGTTCTTCTTTGTCCAAGGAG +
Preference number: 6 (lower is better)
Translates to: DRKAWTMSALMLLRG*SFSTRNICSSLSKE
Trigger: CTCCTTGGACAAAGAAGAACAAATATTCCTCGTGCTAAAGGACAAACCTCTCAGCAGCATCAAAGCAGACATCGTCCATGCCTTTCTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5
CDS CAA 72 bp GCATGGACGATGTCTGCTTTGATGCTGCTGAGAGGTTaGTCCTTTAGCACGAGGAATATTTGTTCTTCTTTG +
Preference number: 6 (lower is better)
Translates to: AWTMSALMLLRG*SFSTRNICSSL
Trigger: CAAAGAAGAACAAATATTCCTCGTGCTAAAGGACAAACCTCTCAGCAGCATCAAAGCAGACATCGTCCATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000309383.6
ENST00000326848.7
ENST00000590333.5