RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BEND5 (Homo sapiens)

Ensembl gene IDs: ENSG00000162373

Ensembl transcript IDs: ENST00000371833.4, ENST00000463562.1, ENST00000476079.5, ENST00000476096.1, ENST00000480399.1, ENST00000489956.1

Found 139 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACACCACCATaGACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCA +
Preference number: 1 (lower is better)
Translates to: AADPRTRWIPAHTPP*TVGSDLDGTIARKS
Trigger: TGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 90 bp ACCCCAGAACCCGATGGATCCCTGCACACACACCACCATGCACGGTaGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATGCCA +
Preference number: 1 (lower is better)
Translates to: TPEPDGSLHTHHHAR*GLIWTAPSLANHMP
Trigger: TGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR TCA 90 bp AACCCGATGGATCCCTGCACACACACCACCATGCACGGTGGGGTCTaGTTTGGACGGCACCATCGCTCGCAAATCACATGCCACACAAGG +
Preference number: 1 (lower is better)
Translates to: NPMDPCTHTTMHGGV*FGRHHRSQITCHTR
Trigger: CCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 90 bp TTGGAGTGTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATaGATCCCTGCACACACACCACCATGCACGGTGGGGTCTGATTTG +
Preference number: 1 (lower is better)
Translates to: LECPHSEQAADPRTR*IPAHTPPCTVGSDL
Trigger: CAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR TCA 90 bp AAGCCATCTGTCGTCTTTGGAGTGTCCACATTCAGAACAAGCCGCTaGCCCCAGAACCCGATGGATCCCTGCACACACACCACCATGCAC +
Preference number: 1 (lower is better)
Translates to: KPSVVFGVSTFRTSR*PQNPMDPCTHTTMH
Trigger: GTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 90 bp GATGGATCCCTGCACACACACCACCATGCACGGTGGGGTCTGATTTaGACGGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAAC +
Preference number: 1 (lower is better)
Translates to: DGSLHTHHHARWGLI*TAPSLANHMPHKEN
Trigger: GTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 90 bp AGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTaGAGTGTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGAT +
Preference number: 1 (lower is better)
Translates to: SARLLLSLSKAICRL*SVHIQNKPLTPEPD
Trigger: ATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR TCA 90 bp AGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTaGGTCTCAGCAAAGCCATCTGTCGTCTTTGGAGTGTCCACATTC +
Preference number: 1 (lower is better)
Translates to: SVFPIPRRTPVPGCS*VSAKPSVVFGVSTF
Trigger: GAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR-3UTR TCA 90 bp AGTGTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACATGCACGGTGGGGTCTaGTTTGGACGGCACCATCGC +
Preference number: 2 (lower is better)
Translates to: SVHIQNKPLTPEPDGSLHMHGGV*FGRHHR
Trigger: GCGATGGTGCCGTCCAAATCAGACCCCACCGTGCAT...GTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CAA 90 bp CAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTaGGAGTGTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGA +
Preference number: 2 (lower is better)
Translates to: QCQAAPESQQSHLSS*ECPHSEQAADPRTR
Trigger: TCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR-3UTR CCA 90 bp CAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGAGTGTCACCACCATGCACGGTaGGGTCTGATTTGGACGGCA +
Preference number: 2 (lower is better)
Translates to: QCQAAPESQQSHLSSLECHHHAR*GLIWTA
Trigger: TGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTG...ACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CAA 90 bp CGATGGATCCCTGCACACACACCACCATGCACGGTGGGGTCTGATTaGGACGGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAA +
Preference number: 2 (lower is better)
Translates to: RWIPAHTPPCTVGSD*DGTIARKSHATQGK
Trigger: TTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR-3UTR TCA 90 bp CCTCCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCTTTCAGAACAAGCCGCTaGCCCCAGAACCCGATGGAT +
Preference number: 2 (lower is better)
Translates to: PPRRVFSPFPEGHQCQAAFRTSR*PQNPMD
Trigger: ATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAA...AGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR-3UTR CCA 90 bp TTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACCTTATCCCCCTCCAAGACGGTGGGGTCTGATTTaGACGGCACCATCGCTCGCA +
Preference number: 2 (lower is better)
Translates to: FKPQSSDRQLRQPYPPPRRWGLI*TAPSLA
Trigger: TGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCG...TCTTGGAGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR-3UTR CCA 90 bp CCCTCCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCGCCATCTGTCGTCTTTaGAGTGTCCACATTCAGAAC +
Preference number: 2 (lower is better)
Translates to: PSKKSVFPIPRRTPVPGCAICRL*SVHIQN
Trigger: GTTCTGAATGTGGACACTCCAAAGACGACAGATGGC...GCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR-3UTR GCA 90 bp AGCCATCTGTCGTCTTTGGAGTGTCCACATTCAGAACAAGCCGCTGACCCCAGACGCTCGCAAATCACATaGCACACAAGGAAAACACGA +
Preference number: 2 (lower is better)
Translates to: SHLSSLECPHSEQAADPRRSQIT*HTRKTR
Trigger: TCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCG...TCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR GCA 72 bp CCCAGAACCCGATGGATCCCTGCACACACACCACCATaGACGGTGGGGTCTGATTTGGACGGCACCATCGCT +
Preference number: 3 (lower is better)
Translates to: PRTRWIPAHTPP*TVGSDLDGTIA
Trigger: AGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 72 bp CCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATaGATCCCTGCACACACACCACCATGCACGGTGGGG +
Preference number: 3 (lower is better)
Translates to: PHSEQAADPRTR*IPAHTPPCTVG
Trigger: CCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 72 bp CCCGATGGATCCCTGCACACACACCACCATGCACGGTaGGGTCTGATTTGGACGGCACCATCGCTCGCAAAT +
Preference number: 3 (lower is better)
Translates to: PDGSLHTHHHAR*GLIWTAPSLAN
Trigger: ATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR TCA 72 bp GATCCCTGCACACACACCACCATGCACGGTGGGGTCTaGTTTGGACGGCACCATCGCTCGCAAATCACATGC +
Preference number: 3 (lower is better)
Translates to: DPCTHTTMHGGV*FGRHHRSQITC
Trigger: GCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 72 bp CTGCACACACACCACCATGCACGGTGGGGTCTGATTTaGACGGCACCATCGCTCGCAAATCACATGCCACAC +
Preference number: 3 (lower is better)
Translates to: LHTHHHARWGLI*TAPSLANHMPH
Trigger: GTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR TCA 72 bp GTCGTCTTTGGAGTGTCCACATTCAGAACAAGCCGCTaGCCCCAGAACCCGATGGATCCCTGCACACACACC +
Preference number: 3 (lower is better)
Translates to: VVFGVSTFRTSR*PQNPMDPCTHT
Trigger: GGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CCA 72 bp CTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTaGAGTGTCCACATTCAGAACAAGCCGCTGACCCCA +
Preference number: 3 (lower is better)
Translates to: LLLSLSKAICRL*SVHIQNKPLTP
Trigger: TGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp GCACACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCCAAAGGCGTACATGGTaGGCGCCGGGGGCGGGCCCC +
Preference number: 4 (lower is better)
Translates to: AHTPPCTVGSDLDGTIARQRRTW*APGAGP
Trigger: GGGGCCCGCCCCCGGCGCCCACCATGTACGCCTTTG...GCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp TTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCGCGAGCGGGGGCTaGAGTCGCGCACGCACGACA +
Preference number: 4 (lower is better)
Translates to: FPHSQKDTSARLLLSLSKAASGG*SRARTT
Trigger: TGTCGTGCGTGCGCGACTTCAGCCCCCGCTCGCGGC...TTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GCACACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCGCCTCGATGCTCTTGTaGGCCACTTCGCTCGGCTTC +
Preference number: 4 (lower is better)
Translates to: AHTPPCTVGSDLDGTIARASMLL*ATSLGF
Trigger: GAAGCCGAGCGAAGTGGCGCACAAGAGCATCGAGGC...GCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp CCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTGCACAAAGGCGTACATaGTGGGCGCCGGGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: PRRVFSPFPEGHQCQAAPAQRRT*WAPGAG
Trigger: GCCCGCCCCCGGCGCCCACCATGTACGCCTTTGTGC...AGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACCTCTTCCGGACACGTaGTATGGCCCAGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: VHIQNKPLTPEPDGSLHTPLPDT*YGPGSG
Trigger: GCCTGAGCCTGGGCCATAGCACGTGTCCGGAAGAGG...TGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACAGTCCGCTCCAGCTCCTaGTGGAGGTGGCGCATCTCT +
Preference number: 4 (lower is better)
Translates to: VHIQNKPLTPEPDGSLHTVRSSS*WRWRIS
Trigger: AGAGATGCGCCACCTCCAGCAGGAGCTGGAGCGGAC...TGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp GACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGCGCTCCAGCTCCTGCTaGAGGTGGCGCATCTCTTCC +
Preference number: 4 (lower is better)
Translates to: DTSARLLLSLSKAICRLWRSSSC*RWRISS
Trigger: GGAAGAGATGCGCCACCTCCAGCAGGAGCTGGAGCG...CCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp ATCCCTGCACACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCCGGTGGGGTCTGATTTaGACGGCACCATCGCTCGCA +
Preference number: 4 (lower is better)
Translates to: IPAHTPPCTVGSDLDGTIRWGLI*TAPSLA
Trigger: TGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCG...GATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp ACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATATGCACGGTGGGGTCTaGTTTGGACGGCACCATCGC +
Preference number: 4 (lower is better)
Translates to: THHHARWGLIWTAPSLANMHGGV*FGRHHR
Trigger: GCGATGGTGCCGTCCAAATCAGACCCCACCGTGCAT...ATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp CCCTCCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCAGGCTCAGGCCGTTCTaGTTCTCTAGCCGAGCCACC +
Preference number: 4 (lower is better)
Translates to: PSKKSVFPIPRRTPVPGCRLRPF*FSSRAT
Trigger: GGTGGCTCGGCTAGAGAAGCAGAACGGCCTGAGCCT...GCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp ACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATGCCACACAAGCCAGCGCCAGGATCTaGGCCTTGTGGAGCAACAGC +
Preference number: 4 (lower is better)
Translates to: TVGSDLDGTIARKSHATQASARI*ALWSNS
Trigger: GCTGTTGCTCCACAAGGCCCAGATCCTGGCGCTGGC...TTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp GACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGGGATATACTTGTCCATaGCAGGCGCAGGAGCGGGGT +
Preference number: 4 (lower is better)
Translates to: DTSARLLLSLSKAICRLWGYTCP*QAQERG
Trigger: ACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCC...CCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp CGATGGATCCCTGCACACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCGTTGCTGCTGGTAGTTaGGCAGCAGCTCCTCATACA +
Preference number: 4 (lower is better)
Translates to: RWIPAHTPPCTVGSDLDGVAAGS*AAAPHT
Trigger: TGTATGAGGAGCTGCTGCGCAACTACCAGCAGCAAC...GCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGATCCATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp ACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCCAGAAGGACACCAGTaGCAGGCTGCTCCTGAGTCT +
Preference number: 4 (lower is better)
Translates to: THHHARWGLIWTAPSLANPEGHQ*QAAPES
Trigger: AGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGG...ATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp CCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATAGGAGCAGCACGTCCTaGAGCCTCCGGTTAAGGTCA +
Preference number: 4 (lower is better)
Translates to: PFPEGHQCQAAPESQQSHRSSTS*SLRLRS
Trigger: TGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCT...ATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp TCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACACCACCACTTTTTCCAGATCAATaGCGGGACCGCTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: SEQAADPRTRWIPAHTPPLFPDQ*RDRCQA
Trigger: GGCTTGGCAGCGGTCCCGCCATTGATCTGGAAAAAG...TGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp GACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGCACCACCATGCACGGTaGGGTCTGATTTGGACGGCA +
Preference number: 4 (lower is better)
Translates to: DTSARLLLSLSKAICRLWHHHAR*GLIWTA
Trigger: TGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTG...CCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp GACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGGACCCCAGAACCCGATaGATCCCTGCACACACACCA +
Preference number: 4 (lower is better)
Translates to: DTSARLLLSLSKAICRLWDPRTR*IPAHTP
Trigger: TGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTC...CCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CAA 72 bp CCTGCACACACACCACCATGCACGGTGGGGTCTGATTaGGACGGCACCATCGCTCGCAAATCACATGCCACA +
Preference number: 4 (lower is better)
Translates to: PAHTPPCTVGSD*DGTIARKSHAT
Trigger: TGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp GCACACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCTATTTGCTTCCTCACTaGAAGTGCTCCGTAACTCCG +
Preference number: 4 (lower is better)
Translates to: AHTPPCTVGSDLDGTIARYLLPH*KCSVTP
Trigger: CGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATA...GCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGGTCAGATTTGTCTTCTaGCAGCGCCAGGATCTGGGC +
Preference number: 4 (lower is better)
Translates to: DTSARLLLSLSKAICRLWVRFVF*QRQDLG
Trigger: GCCCAGATCCTGGCGCTGGCAGAAGACAAATCTGAC...CCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp TCTCAGCAAAGCCATCTGTCGTCTTTGGAGTGTCCACATTCAGAACAAGCCGCTCAATGGCGGGACCGCTaGCAAGCCGCAGGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SQQSHLSSLECPHSEQAAQWRDR*QAAGAA
Trigger: TGCTGCTCCTGCGGCTTGGCAGCGGTCCCGCCATTG...AGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp TCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACACCACCAACGGCGTACACCTTCTaGTTGTCAAAATCCAGCCGC +
Preference number: 4 (lower is better)
Translates to: SEQAADPRTRWIPAHTPPTAYTF*LSKSSR
Trigger: GCGGCTGGATTTTGACAACCAGAAGGTGTACGCCGT...TGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp TTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACCTTATCCCCCTCCAAGAAGGATCTGGGCCTTGTaGAGCAACAGCGCGCCCCAG +
Preference number: 4 (lower is better)
Translates to: FKPQSSDRQLRQPYPPPRRIWAL*SNSAPQ
Trigger: CTGGGGCGCGCTGTTGCTCCACAAGGCCCAGATCCT...TCTTGGAGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp TTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACCTTATCCCCCTCCAAGATCCGGACACGTGCTATaGCCCAGGCTCAGGCCGTTC +
Preference number: 4 (lower is better)
Translates to: FKPQSSDRQLRQPYPPPRSGHVL*PRLRPF
Trigger: GAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGA...TCTTGGAGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp ACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATGCCACACAACAAACCCCAGTCAAGTaGCAGGCAACTCAGGCAACC +
Preference number: 4 (lower is better)
Translates to: TVGSDLDGTIARKSHATQQTPVK*QATQAT
Trigger: GGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTG...TTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp GTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACAATCCCGCTTCCCAGATaGACCTTGCCATTGTCTAGG +
Preference number: 4 (lower is better)
Translates to: VHIQNKPLTPEPDGSLHTIPLPR*TLPLSR
Trigger: CCTAGACAATGGCAAGGTCCATCTGGGAAGCGGGAT...TGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp CCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATGTGAGGCGAGAGGGGTaGTTTAGGGACTGCATCTTT +
Preference number: 4 (lower is better)
Translates to: PFPEGHQCQAAPESQQSHVRREG*FRDCIF
Trigger: AAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCAC...ATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
3UTR CAA 72 bp GCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTaGGAGTGTCCACATTCAGAACAAGCCGCTGACCCC +
Preference number: 4 (lower is better)
Translates to: AAPESQQSHLSS*ECPHSEQAADP
Trigger: GGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp TGGAGTGTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGTTGTGGCGACGCCTGTaGCGCTTCTGTTTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: WSVHIQNKPLTPEPDGSLLWRRL*RFCFSE
Trigger: TTCTGAAAAACAGAAGCGTCACAGGCGTCGCCACAA...CAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp CACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAAGCCATCTGTCGTCTTTaGAGTGTCCACATTCAGAAC +
Preference number: 4 (lower is better)
Translates to: HTPPCTVGSDLDGTIARKAICRL*SVHIQN
Trigger: GTTCTGAATGTGGACACTCCAAAGACGACAGATGGC...TTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAACACGAAAGCTTTATGCCACCACTGCCTCGATaGTCTTGTGCGCCACTTCGC +
Preference number: 4 (lower is better)
Translates to: GTIARKSHATQGKHESFMPPLPR*SCAPLR
Trigger: GCGAAGTGGCGCACAAGAGCATCGAGGCAGTGGTGG...CATAAAGCTTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACACCACCATGCTTCCCAGATGGACCTTaGCATTGTCTAGGATATACT +
Preference number: 4 (lower is better)
Translates to: EQAADPRTRWIPAHTPPCFPDGP*HCLGYT
Trigger: AGTATATCCTAGACAATGGCAAGGTCCATCTGGGAA...GCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp ACACACCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCGCTCGCAAATCACATaGCACACAAGGAAAACACGA +
Preference number: 4 (lower is better)
Translates to: THHHARWGLIWTAPSLANRSQIT*HTRKTR
Trigger: TCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCG...ATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp TCTCAGCAAAGCCATCTGTCGTCTTTGGAGTGTCCACATTCAGAACAAGCCGCTGCACACACACCACCATaGACGGTGGGGTCTGATTTG +
Preference number: 4 (lower is better)
Translates to: SQQSHLSSLECPHSEQAAAHTPP*TVGSDL
Trigger: CAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGC...AGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp GGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAACACGAAAGCTTTATGAGCTCCTGCTGGAGGTaGCGCATCTCTTCCTGTTGC +
Preference number: 4 (lower is better)
Translates to: GTIARKSHATQGKHESFMSSCWR*RISSCC
Trigger: GCAACAGGAAGAGATGCGCCACCTCCAGCAGGAGCT...CATAAAGCTTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GATAGTAAAAATATCCATTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACGCCTGTTGTACCAGCTaGCTCCGAGTCCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: DSKNIHSNPSQVTGNSGNACCTS*LRVRSS
Trigger: GCTGGAGCGGACTCGGAGGCAGCTGGTACAACAGGC...GTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAATGGATATTTTTACTATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp TTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGATAGGACGACGTATTTaGTTCCTCACTGAAAGTGCT +
Preference number: 4 (lower is better)
Translates to: FPEGHQCQAAPESQQSHLIGRRI*FLTESA
Trigger: AGCACTTTCAGTGAGGAAGCAAATACGTCGTCCTAT...CAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAACACGAAAGCTTTATGAACCCGATGGATCCCTaGACACACACCACCATGCAC +
Preference number: 4 (lower is better)
Translates to: GTIARKSHATQGKHESFMNPMDP*THTTMH
Trigger: GTGCATGGTGGTGTGTGTGCAGGGATCCATCGGGTT...CATAAAGCTTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp ACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATGCCACACAATGGGTTACTTGTAGCTaGTGCCATTTCTCCTCATCA +
Preference number: 4 (lower is better)
Translates to: TVGSDLDGTIARKSHATQWVTCS*CHFSSS
Trigger: TGATGAGGAGAAATGGCACCAGCTACAAGTAACCCA...TTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp GTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACATCCCCAAATCATAACTaGCAAGTTCTTCGTGTACTT +
Preference number: 4 (lower is better)
Translates to: VHIQNKPLTPEPDGSLHTSPNHN*QVLRVL
Trigger: AAGTACACGAAGAACTTGGCAGTTATGATTTGGGGA...TGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp TTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAATTTGGAGAGTCTCTGTaGAATTTCAGTTTCATCCAC +
Preference number: 4 (lower is better)
Translates to: FPHSQKDTSARLLLSLSKFGESL*NFSFIH
Trigger: GTGGATGAAACTGAAATTGCACAGAGACTCTCCAAA...TTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp TTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACCTTATCCCCCTCCAAGACCATCTTCTTCTACATaGTTAAGAGAAAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: FKPQSSDRQLRQPYPPPRPSSST*LRESLG
Trigger: CCCCAAGCTTTCTCTTAATCATGTAGAAGAAGATGG...TCTTGGAGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp AGAGCAACAAAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCAGTCAACATGTCCTCTGTGCCTaGCGAGGCCTCCACGAAGAC +
Preference number: 4 (lower is better)
Translates to: RATKKSLDSKNIHSNPSQHVLCA*RGLHED
Trigger: GTCTTCGTGGAGGCCTCGCCAGGCACAGAGGACATG...TTGACTGGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTTTGTTGCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CCA 90 bp ATTTGGACGGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAACACGAAATACTTGGAATCTCCTTaGGTTACTTGTAGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: IWTAPSLANHMPHKENTKYLESP*VTCSWC
Trigger: GCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTA...TTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp ATTTGGACGGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAACACGAAACATACAAACACTCTCTaGCGATGCTTAGTTTGTGAG +
Preference number: 4 (lower is better)
Translates to: IWTAPSLANHMPHKENTKHTNTL*RCLVCE
Trigger: CTCACAAACTAAGCATCGTCAGAGAGTGTTTGTATG...TTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp CAAAATAGAGCAACAAAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCTGTCCATGTCCTCTGTaGCTGGCGAGGCCTCCACGA +
Preference number: 4 (lower is better)
Translates to: QNRATKKSLDSKNIHSNPCPCPL*LARPPR
Trigger: TCGTGGAGGCCTCGCCAGGCACAGAGGACATGGACA...GGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTTTGTTGCTCTATTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp AAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCAGTCAAGTGACAGGCACGATGCTTAGTTTGTaGGGCGAGAGGGGTGGTTTA +
Preference number: 4 (lower is better)
Translates to: KKSLDSKNIHSNPSQVTGTMLSL*GERGGL
Trigger: TAAACCACCCCTCTCGCCTCACAAACTAAGCATCGT...GCCTGTCACTTGACTGGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp CAAAATAGAGCAACAAAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCTTCAGAACAAGCCGCTaGCCCCAGAACCCGATGGAT +
Preference number: 4 (lower is better)
Translates to: QNRATKKSLDSKNIHSNPFRTSR*PQNPMD
Trigger: ATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAA...GGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTTTGTTGCTCTATTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp AAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCAGTCAAGTGACAGGCCATTTCAGACACAAGTaGCCCGTACTCCTTGAGCTT +
Preference number: 4 (lower is better)
Translates to: KKSLDSKNIHSNPSQVTGHFRHK*PVLLEL
Trigger: AAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATG...GCCTGTCACTTGACTGGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR TCA 90 bp GCAACAAAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCAGTCAAGTGCACAGATGTACTTGTTaGCTTTGGAGAGTCTCTGTG +
Preference number: 4 (lower is better)
Translates to: ATKKSLDSKNIHSNPSQVHRCTC*LWRVSV
Trigger: CACAGAGACTCTCCAAAGTCAACAAGTACATCTGTG...CACTTGACTGGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTTTGTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR GCA 90 bp CAAAATAGAGCAACAAAGAAGTCCTTGGATAGTAAAAATATCCATTCAAACCCCGTTACTTGTAGCTGGTaGCATTTCTCCTCATCAACC +
Preference number: 4 (lower is better)
Translates to: QNRATKKSLDSKNIHSNPVTCSW*HFSSST
Trigger: GGTTGATGAGGAGAAATGGCACCAGCTACAAGTAAC...GGGGTTTGAATGGATATTTTTACTATCCAAGGACTTCTTTGTTGCTCTATTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS CCA 90 bp CGTAGCAGACGTTGTCCTCCAGGAACCGCACAAAGGCGTACATGGTaGGCGCCGGGGGCGGGCCCCGGTCGGGCAGCTCAGCCCGCGGGG +
Preference number: 5 (lower is better)
Translates to: RSRRCPPGTAQRRTW*APGAGPGRAAQPAG
Trigger: CCCCGCGGGCTGAGCTGCCCGACCGGGGCCCGCCCCCGGCGCCCACCATGTACGCCTTTGTGCGGTTCCTGGAGGACAACGTCTGCTACG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000480399.1
CDS TCA 90 bp CGGCGTACACCTTCTGGTTGTCAAAATCCAGCCGCGAGCGGGGGCTaGAGTCGCGCACGCACGACACGGGCAGCGCGTAGCAGACGTTGT +
Preference number: 5 (lower is better)
Translates to: RRTPSGCQNPAASGG*SRARTTRAARSRRC
Trigger: ACAACGTCTGCTACGCGCTGCCCGTGTCGTGCGTGCGCGACTTCAGCCCCCGCTCGCGGCTGGATTTTGACAACCAGAAGGTGTACGCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000480399.1
CDS GCA 90 bp CCTCTGTGCCTGGCGAGGCCTCCACGAAGACCTCTTCCGGACACGTaGTATGGCCCAGGCTCAGGCCGTTCTGCTTCTCTAGCCGAGCCA +
Preference number: 5 (lower is better)
Translates to: PLCLARPPRRPLPDT*YGPGSGRSASLAEP
Trigger: TGGCTCGGCTAGAGAAGCAGAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGAAGAGGTCTTCGTGGAGGCCTCGCCAGGCACAGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CCA 90 bp GTGCCTGGCGAGGCCTCCACGAAGACCTCTTCCGGACACGTGCTATaGCCCAGGCTCAGGCCGTTCTGCTTCTCTAGCCGAGCCACCACT +
Preference number: 5 (lower is better)
Translates to: VPGEASTKTSSGHVL*PRLRPFCFSSRATT
Trigger: AGTGGTGGCTCGGCTAGAGAAGCAGAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGAAGAGGTCTTCGTGGAGGCCTCGCCAGGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS GCA 90 bp AAGACCTCTTCCGGACACGTGCTATGGCCCAGGCTCAGGCCGTTCTaGTTCTCTAGCCGAGCCACCACTGCCTCGATGCTCTTGTGCGCC +
Preference number: 5 (lower is better)
Translates to: KTSSGHVLWPRLRPF*FSSRATTASMLLCA
Trigger: GGCGCACAAGAGCATCGAGGCAGTGGTGGCTCGGCTAGAGAAGCAGAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGAAGAGGTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS-3UTR CAA 90 bp GAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACACCACCATGCACTGCCTCGATGCTCTaGTGCGCCACTTCGCTCGGC +
Preference number: 5 (lower is better)
Translates to: EQAADPRTRWIPAHTPPCTASML*CATSLG
Trigger: GCCGAGCGAAGTGGCGCACAAGAGCATCGAGGCAGT...GCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS GCA 90 bp GAGCCCGGGGCACCACAGCATCTTCTAGACTGTCCATGTCCTCTGTaGCTGGCGAGGCCTCCACGAAGACCTCTTCCGGACACGTGCTAT +
Preference number: 5 (lower is better)
Translates to: EPGAPQHLLDCPCPL*LARPPRRPLPDTCY
Trigger: ATAGCACGTGTCCGGAAGAGGTCTTCGTGGAGGCCTCGCCAGGCACAGAGGACATGGACAGTCTAGAAGATGCTGTGGTGCCCCGGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS GCA 90 bp GCTCCTGCTGGAGGTGGCGCATCTCTTCCTGTTGCTGCTGGTAGTTaGGCAGCAGCTCCTCATACAGAGCCCGGGGCACCACAGCATCTT +
Preference number: 5 (lower is better)
Translates to: APAGGGASLPVAAGS*AAAPHTEPGAPQHL
Trigger: AAGATGCTGTGGTGCCCCGGGCTCTGTATGAGGAGCTGCTGCGCAACTACCAGCAGCAACAGGAAGAGATGCGCCACCTCCAGCAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS GCA 90 bp ACAAGTGCCCCGTACTCCTTGAGCTTCTTGGCCTGTTGTACCAGCTaGCTCCGAGTCCGCTCCAGCTCCTGCTGGAGGTGGCGCATCTCT +
Preference number: 5 (lower is better)
Translates to: TSAPYSLSFLACCTS*LRVRSSSCWRWRIS
Trigger: AGAGATGCGCCACCTCCAGCAGGAGCTGGAGCGGACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CCA 90 bp AGATCAATGGCGGGACCGCTGCCAAGCCGCAGGAGCAGCACGTCCTaGAGCCTCCGGTTAAGGTCACGGAGCTCCTTCATTTCAGACACA +
Preference number: 5 (lower is better)
Translates to: RSMAGPLPSRRSSTS*SLRLRSRSSFISDT
Trigger: TGTGTCTGAAATGAAGGAGCTCCGTGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCTGCGGCTTGGCAGCGGTCCCGCCATTGATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371833.4
ENST00000463562.1
CDS TCA 90 bp GGTCACGGAGCTCCTTCATTTCAGACACAAGTGCCCCGTACTCCTTaGGCTTCTTGGCCTGTTGTACCAGCTGCCTCCGAGTCCGCTCCA +
Preference number: 5 (lower is better)
Translates to: GHGAPSFQTQVPRTP*ASWPVVPAASESAP
Trigger: TGGAGCGGACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCTCCGTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS TCA 90 bp CAGGCGCAGGAGCGGGGTAATAGGACGACGTATTTGCTTCCTCACTaGAAGTGCTCCGTAACTCCGGCTCGGGCTCGAGACATTCTGACT +
Preference number: 5 (lower is better)
Translates to: QAQERGNRTTYLLPH*KCSVTPARARDILT
Trigger: AGTCAGAATGTCTCGAGCCCGAGCCGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCCTATTACCCCGCTCCTGCGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371833.4
ENST00000463562.1
CDS CCA 90 bp CTGTCATACAAACACTCGCTGCCAAGCCGCAGGAGCAGCACGTCCTaGAGCCTCCGGTTAAGGTCACGGAGCTCCTTCATTTCAGACACA +
Preference number: 5 (lower is better)
Translates to: LSYKHSLPSRRSSTS*SLRLRSRSSFISDT
Trigger: TGTGTCTGAAATGAAGGAGCTCCGTGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCTGCGGCTTGGCAGCGAGTGTTTGTATGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476096.1
CDS-3UTR CAA 90 bp CCCTCCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCAGTGCCCCGTACTCCTaGAGCTTCTTGGCCTGTTGT +
Preference number: 5 (lower is better)
Translates to: PSKKSVFPIPRRTPVPGCSAPYS*SFLACC
Trigger: ACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACT...GCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS GCA 90 bp GAGCCTCCGGTTAAGGTCACGGAGCTCCTTCATTTCAGACACAAGTaGCCCGTACTCCTTGAGCTTCTTGGCCTGTTGTACCAGCTGCCT +
Preference number: 5 (lower is better)
Translates to: EPPVKVTELLHFRHK*PVLLELLGLLYQLP
Trigger: AGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCTCCGTGACCTTAACCGGAGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS-3UTR CAA 90 bp TATCCATTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACCTTATCCCCCTACGGTGGGGTCTGATTaGGACGGCACCATCGCTCGC +
Preference number: 5 (lower is better)
Translates to: YPFKPQSSDRQLRQPYPPTVGSD*DGTIAR
Trigger: GCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGT...AGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAATGGATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp GAAGGACACCAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTCGCCCCTCAGGTCTCTaGATGTGTCTAAGCTGTAAA +
Preference number: 5 (lower is better)
Translates to: EGHQCQAAPESQQSHLSSRPSGL*MCLSCK
Trigger: TTTACAGCTTAGACACATCAAGAGACCTGAGGGGCG...AGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTGGTGTCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp GAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACACACCACCATGCAGATGGACCTTGCCATaGTCTAGGATATACTTGTCC +
Preference number: 5 (lower is better)
Translates to: EQAADPRTRWIPAHTPPCRWTLP*SRIYLS
Trigger: GGACAAGTATATCCTAGACAATGGCAAGGTCCATCT...GCATGGTGGTGTGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS GCA 90 bp ACACACCGTTCCAAACCTCCAACAGCGATGACACTGCACAGACTGTaGAAACAGGACCAAGCTTGGTGGCACAGCATGAATCAGGGCTCT +
Preference number: 5 (lower is better)
Translates to: THRSKPPTAMTLHRL*KQDQAWWHSMNQGS
Trigger: AGAGCCCTGATTCATGCTGTGCCACCAAGCTTGGTCCTGTTTGCACAGTCTGTGCAGTGTCATCGCTGTTGGAGGTTTGGAACGGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS CCA 90 bp ACAGCGATGACACTGCACAGACTGTGCAAACAGGACCAAGCTTGGTaGCACAGCATGAATCAGGGCTCTCTAGAAAGTTGGCCAGCAAGG +
Preference number: 5 (lower is better)
Translates to: TAMTLHRLCKQDQAW*HSMNQGSLESWPAR
Trigger: CCTTGCTGGCCAACTTTCTAGAGAGCCCTGATTCATGCTGTGCCACCAAGCTTGGTCCTGTTTGCACAGTCTGTGCAGTGTCATCGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS CCA 90 bp CCAACAGCGATGACACTGCACAGACTGTGCAAACAGGACCAAGCTTaGTGGCACAGCATGAATCAGGGCTCTCTAGAAAGTTGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: PTAMTLHRLCKQDQA*WHSMNQGSLESWPA
Trigger: TGCTGGCCAACTTTCTAGAGAGCCCTGATTCATGCTGTGCCACCAAGCTTGGTCCTGTTTGCACAGTCTGTGCAGTGTCATCGCTGTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS-3UTR CAA 90 bp CAGTGCCAGGCTGCTCCTGAGTCTCAGCAAAGCCATCTGTCGTCTTTGGAGTGTTTTTCAAGGTCAGATTaGTCTTCTGCCAGCGCCAGG +
Preference number: 5 (lower is better)
Translates to: QCQAAPESQQSHLSSLECFSRSD*SSASAR
Trigger: CCTGGCGCTGGCAGAAGACAAATCTGACCTTGAAAA...ACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGCACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp CCCTCCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCAGCCATCTGTCGTCTTaGGAGTGTCCACATTCAGAA +
Preference number: 5 (lower is better)
Translates to: PSKKSVFPIPRRTPVPGCSHLSS*ECPHSE
Trigger: TTCTGAATGTGGACACTCCAAAGACGACAGATGGCT...GCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS TCA 90 bp CGCTTCCCAGATGGACCTTGCCATTGTCTAGGATATACTTGTCCATaGCAGGCGCAGGAGCGGGGTAATAGGACGACGTATTTGCTTCCT +
Preference number: 5 (lower is better)
Translates to: RFPDGPCHCLGYTCP*QAQERGNRTTYLLP
Trigger: AGGAAGCAAATACGTCGTCCTATTACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAGGTCCATCTGGGAAGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371833.4
ENST00000463562.1
CDS-3UTR CAA 90 bp TCCAAGAAGAGTGTTTTCCCCATTCCCAGAAGGACACCAGTGCCAGGCTGCTCCTTGTCTAGGATATACTaGTCCATGACAGGCGCAGGA +
Preference number: 5 (lower is better)
Translates to: SKKSVFPIPRRTPVPGCSLSRIY*SMTGAG
Trigger: TCCTGCGCCTGTCATGGACAAGTATATCCTAGACAA...GGAGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS GCA 90 bp CAACGAGAATCAGTTCAGGCAAGGGCAGCTGGGATTTTCTTGGACTaGAGATCAATATTTCCCCAGACAATCCTGCCAGCGCCAGGATCT +
Preference number: 5 (lower is better)
Translates to: QRESVQARAAGIFLD*RSIFPQTILPAPGS
Trigger: AGATCCTGGCGCTGGCAGGATTGTCTGGGGAAATATTGATCTGCAGTCCAAGAAAATCCCAGCTGCCCTTGCCTGAACTGATTCTCGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480399.1
CDS CCA 90 bp GACCAAGCTTGGTGGCACAGCATGAATCAGGGCTCTCTAGAAAGTTaGCCAGCAAGGCAAATACACACGAGTTGTCCCACGCTTTCACTA +
Preference number: 5 (lower is better)
Translates to: DQAWWHSMNQGSLES*PARQIHTSCPTLSL
Trigger: TAGTGAAAGCGTGGGACAACTCGTGTGTATTTGCCTTGCTGGCCAACTTTCTAGAGAGCCCTGATTCATGCTGTGCCACCAAGCTTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS-3UTR CAA 90 bp AATATCCATTCAAACCCCAGTCAAGTGACAGGCAACTCAGGCAACCTTATCCCCGCGTACACCTTCTGGTaGTCAAAATCCAGCCGCGAG +
Preference number: 5 (lower is better)
Translates to: NIHSNPSQVTGNSGNLIPAYTFW*SKSSRE
Trigger: CTCGCGGCTGGATTTTGACAACCAGAAGGTGTACGC...GGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAATGGATATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp AGTGTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACAAGTTCTTCGTGTACTaGGAATCTCCTTGGGTTACT +
Preference number: 5 (lower is better)
Translates to: SVHIQNKPLTPEPDGSLHKFFVY*ESPWVT
Trigger: AGTAACCCAAGGAGATTCCAAGTACACGAAGAACTT...GTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp CCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATTCACAGATGTACTTGTaGACTTTGGAGAGTCTCTGT +
Preference number: 5 (lower is better)
Translates to: PPCTVGSDLDGTIARKSHSQMYL*TLESLC
Trigger: ACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGA...ATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp CCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATGCCTTTTCACAGATGTACTaGTTGACTTTGGAGAGTCTC +
Preference number: 5 (lower is better)
Translates to: PCTVGSDLDGTIARKSHAFSQMY*LTLESL
Trigger: GAGACTCTCCAAAGTCAACAAGTACATCTGTGAAAA...GGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS-3UTR CAA 90 bp CCACCATGCACGGTGGGGTCTGATTTGGACGGCACCATCGCTCGCAAATCACATATGTACTTGTTGACTTaGGAGAGTCTCTGTGCAATT +
Preference number: 5 (lower is better)
Translates to: PPCTVGSDLDGTIARKSHMYLLT*ESLCAI
Trigger: AATTGCACAGAGACTCTCCAAAGTCAACAAGTACAT...ATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS GCA 90 bp AAGTTCTTCGTGTACTTGGAATCTCCTTGGGTTACTTGTAGCTGGTaGCATTTCTCCTCATCAACCCAAATCCCGCTTCCCAGATGGACC +
Preference number: 5 (lower is better)
Translates to: KFFVYLESPWVTCSW*HFSSSTQIPLPRWT
Trigger: GGTCCATCTGGGAAGCGGGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476079.5
CDS-3UTR CAA 90 bp GTCCACATTCAGAACAAGCCGCTGACCCCAGAACCCGATGGATCCCTGCACACATTCATCCACAGTTTCTaGTGCTATTCTGTCATACAA +
Preference number: 5 (lower is better)
Translates to: VHIQNKPLTPEPDGSLHTFIHSF*CYSVIQ
Trigger: TTGTATGACAGAATAGCACAAGAAACTGTGGATGAA...TGTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS CCA 90 bp AGGTCTCTGTGTAGGACAACGAGAATCAGTTCAGGCAAGGGCAGCTaGGATTTTCTTGGACTGCAGATCAATATTTCCCCAGACAATCCT +
Preference number: 5 (lower is better)
Translates to: RSLCRTTRISSGKGS*DFLGLQINISPDNP
Trigger: AGGATTGTCTGGGGAAATATTGATCTGCAGTCCAAGAAAATCCCAGCTGCCCTTGCCTGAACTGATTCTCGTTGTCCTACACAGAGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000463562.1
ENST00000480399.1
CDS-3UTR CAA 90 bp CGGCACCATCGCTCGCAAATCACATGCCACACAAGGAAAACACGAAAGCTTTATCTTCCCAGATGGACCTaGCCATTGTCTAGGATATAC +
Preference number: 5 (lower is better)
Translates to: RHHRSQITCHTRKTRKLYLPRWT*PLSRIY
Trigger: GTATATCCTAGACAATGGCAAGGTCCATCTGGGAAG...ATAAAGCTTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000371833.4
CDS GCA 90 bp CAACGAGAATCAGTTCAGGCAAGGGCAGCTGGGATTTTCTTGGACTaGAGATCAATATTTCCCCAGACAATCCTTGATGTGTCTAAGCTG +
Preference number: 5 (lower is better)
Translates to: QRESVQARAAGIFLD*RSIFPQTILDVSKL
Trigger: CAGCTTAGACACATCAAGGATTGTCTGGGGAAATATTGATCTGCAGTCCAAGAAAATCCCAGCTGCCCTTGCCTGAACTGATTCTCGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000463562.1
CDS CCA 90 bp CCCCAAATCATAACTGCCAAGTTCTTCGTGTACTTGGAATCTCCTTaGGTTACTTGTAGCTGGTGCCATTTCTCCTCATCAACCCAAATC +
Preference number: 5 (lower is better)
Translates to: PQIITAKFFVYLESP*VTCSWCHFSSSTQI
Trigger: GATTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476079.5
CDS CCA 72 bp CGTTGTCCTCCAGGAACCGCACAAAGGCGTACATGGTaGGCGCCGGGGGCGGGCCCCGGTCGGGCAGCTCAG +
Preference number: 6 (lower is better)
Translates to: RCPPGTAQRRTW*APGAGPGRAAQ
Trigger: CTGAGCTGCCCGACCGGGGCCCGCCCCCGGCGCCCACCATGTACGCCTTTGTGCGGTTCCTGGAGGACAACG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000480399.1
CDS TCA 72 bp CCTTCTGGTTGTCAAAATCCAGCCGCGAGCGGGGGCTaGAGTCGCGCACGCACGACACGGGCAGCGCGTAGC +
Preference number: 6 (lower is better)
Translates to: PSGCQNPAASGG*SRARTTRAARS
Trigger: GCTACGCGCTGCCCGTGTCGTGCGTGCGCGACTTCAGCCCCCGCTCGCGGCTGGATTTTGACAACCAGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000480399.1
CDS CCA 72 bp GCGGGACCGCTGCCAAGCCGCAGGAGCAGCACGTCCTaGAGCCTCCGGTTAAGGTCACGGAGCTCCTTCATT +
Preference number: 6 (lower is better)
Translates to: AGPLPSRRSSTS*SLRLRSRSSFI
Trigger: AATGAAGGAGCTCCGTGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCTGCGGCTTGGCAGCGGTCCCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371833.4
ENST00000463562.1
CDS GCA 72 bp TTCTCTAGCCGAGCCACCACTGCCTCGATGCTCTTGTaGGCCACTTCGCTCGGCTTCCGCCCCTCAGGTCTC +
Preference number: 6 (lower is better)
Translates to: FSSRATTASMLL*ATSLGFRPSGL
Trigger: GAGACCTGAGGGGCGGAAGCCGAGCGAAGTGGCGCACAAGAGCATCGAGGCAGTGGTGGCTCGGCTAGAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000480399.1
CDS GCA 72 bp TCCGGACACGTGCTATGGCCCAGGCTCAGGCCGTTCTaGTTCTCTAGCCGAGCCACCACTGCCTCGATGCTC +
Preference number: 6 (lower is better)
Translates to: SGHVLWPRLRPF*FSSRATTASML
Trigger: GAGCATCGAGGCAGTGGTGGCTCGGCTAGAGAAGCAGAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS GCA 72 bp CTGGCGAGGCCTCCACGAAGACCTCTTCCGGACACGTaGTATGGCCCAGGCTCAGGCCGTTCTGCTTCTCTA +
Preference number: 6 (lower is better)
Translates to: LARPPRRPLPDT*YGPGSGRSASL
Trigger: TAGAGAAGCAGAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGAAGAGGTCTTCGTGGAGGCCTCGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS GCA 72 bp CCGTACTCCTTGAGCTTCTTGGCCTGTTGTACCAGCTaGCTCCGAGTCCGCTCCAGCTCCTGCTGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: PYSLSFLACCTS*LRVRSSSCWRW
Trigger: CCACCTCCAGCAGGAGCTGGAGCGGACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CCA 72 bp AATATTTCCCCAGACAATCCTGCCAGCGCCAGGATCTaGGCCTTGTGGAGCAACAGCGCGCCCCAGTCGCGG +
Preference number: 6 (lower is better)
Translates to: NISPDNPASARI*ALWSNSAPQSR
Trigger: CCGCGACTGGGGCGCGCTGTTGCTCCACAAGGCCCAGATCCTGGCGCTGGCAGGATTGTCTGGGGAAATATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000480399.1
CDS GCA 72 bp GCACCACAGCATCTTCTAGACTGTCCATGTCCTCTGTaGCTGGCGAGGCCTCCACGAAGACCTCTTCCGGAC +
Preference number: 6 (lower is better)
Translates to: APQHLLDCPCPL*LARPPRRPLPD
Trigger: GTCCGGAAGAGGTCTTCGTGGAGGCCTCGCCAGGCACAGAGGACATGGACAGTCTAGAAGATGCTGTGGTGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CCA 72 bp AAACACTCGCTGCCAAGCCGCAGGAGCAGCACGTCCTaGAGCCTCCGGTTAAGGTCACGGAGCTCCTTCATT +
Preference number: 6 (lower is better)
Translates to: KHSLPSRRSSTS*SLRLRSRSSFI
Trigger: AATGAAGGAGCTCCGTGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCTGCGGCTTGGCAGCGAGTGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476096.1
CDS CAA 90 bp CATTTCAGACACAAGTGCCCCGTACTCCTTGAGCTTCTTGGCCTGTaGTACCAGCTGCCTCCGAGTCCGCTCCAGCTCCTGCTGGAGGTG +
Preference number: 6 (lower is better)
Translates to: HFRHKCPVLLELLGL*YQLPPSPLQLLLEV
Trigger: CACCTCCAGCAGGAGCTGGAGCGGACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CAA 90 bp AGGTCACGGAGCTCCTTCATTTCAGACACAAGTGCCCCGTACTCCTaGAGCTTCTTGGCCTGTTGTACCAGCTGCCTCCGAGTCCGCTCC +
Preference number: 6 (lower is better)
Translates to: RSRSSFISDTSAPYS*SFLACCTSCLRVRS
Trigger: GGAGCGGACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCTCCGTGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS TCA 72 bp GAGCGGGGTAATAGGACGACGTATTTGCTTCCTCACTaGAAGTGCTCCGTAACTCCGGCTCGGGCTCGAGAC +
Preference number: 6 (lower is better)
Translates to: ERGNRTTYLLPH*KCSVTPARARD
Trigger: GTCTCGAGCCCGAGCCGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCCTATTACCCCGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371833.4
ENST00000463562.1
CDS TCA 72 bp GCTCCTTCATTTCAGACACAAGTGCCCCGTACTCCTTaGGCTTCTTGGCCTGTTGTACCAGCTGCCTCCGAG +
Preference number: 6 (lower is better)
Translates to: APSFQTQVPRTP*ASWPVVPAASE
Trigger: CTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CAA 72 bp AGCTCCTTCATTTCAGACACAAGTGCCCCGTACTCCTaGAGCTTCTTGGCCTGTTGTACCAGCTGCCTCCGA +
Preference number: 6 (lower is better)
Translates to: SSFISDTSAPYS*SFLACCTSCLR
Trigger: TCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS CAA 90 bp GGACCAAGCTTGGTGGCACAGCATGAATCAGGGCTCTCTAGAAAGTaGGCCAGCAAGGCAAATACACACGAGTTGTCCCACGCTTTCACT +
Preference number: 6 (lower is better)
Translates to: GPSLVAQHESGLSRK*ASKANTHELSHAFT
Trigger: AGTGAAAGCGTGGGACAACTCGTGTGTATTTGCCTTGCTGGCCAACTTTCTAGAGAGCCCTGATTCATGCTGTGCCACCAAGCTTGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS TCA 72 bp GATGGACCTTGCCATTGTCTAGGATATACTTGTCCATaGCAGGCGCAGGAGCGGGGTAATAGGACGACGTAT +
Preference number: 6 (lower is better)
Translates to: DGPCHCLGYTCP*QAQERGNRTTY
Trigger: ATACGTCGTCCTATTACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAGGTCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371833.4
ENST00000463562.1
CDS GCA 72 bp GTTAAGGTCACGGAGCTCCTTCATTTCAGACACAAGTaGCCCGTACTCCTTGAGCTTCTTGGCCTGTTGTAC +
Preference number: 6 (lower is better)
Translates to: VKVTELLHFRHK*PVLLELLGLLY
Trigger: GTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCTCCGTGACCTTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476096.1
CDS GCA 72 bp TCCAAACCTCCAACAGCGATGACACTGCACAGACTGTaGAAACAGGACCAAGCTTGGTGGCACAGCATGAAT +
Preference number: 6 (lower is better)
Translates to: SKPPTAMTLHRL*KQDQAWWHSMN
Trigger: ATTCATGCTGTGCCACCAAGCTTGGTCCTGTTTGCACAGTCTGTGCAGTGTCATCGCTGTTGGAGGTTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS TCA 72 bp AAGGAGAAACACACCGTTCCAAACCTCCAACAGCGATaGCACTGCACAGACTGTGCAAACAGGACCAAGCTT +
Preference number: 6 (lower is better)
Translates to: KEKHTVPNLQQR*HCTDCANRTKL
Trigger: AAGCTTGGTCCTGTTTGCACAGTCTGTGCAGTGTCATCGCTGTTGGAGGTTTGGAACGGTGTGTTTCTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000489956.1
CDS CAA 90 bp GACTTTGGAGAGTCTCTGTGCAATTTCAGTTTCATCCACAGTTTCTaGTGCTATTCTGTCATACAAACACTCGCTGCCAAGCCGCAGGAG +
Preference number: 6 (lower is better)
Translates to: DFGESLCNFSFIHSF*CYSVIQTLAAKPQE
Trigger: CTCCTGCGGCTTGGCAGCGAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476096.1
CDS CCA 72 bp TGTAGGACAACGAGAATCAGTTCAGGCAAGGGCAGCTaGGATTTTCTTGGACTGCAGATCAATATTTCCCCA +
Preference number: 6 (lower is better)
Translates to: CRTTRISSGKGS*DFLGLQINISP
Trigger: TGGGGAAATATTGATCTGCAGTCCAAGAAAATCCCAGCTGCCCTTGCCTGAACTGATTCTCGTTGTCCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000463562.1
ENST00000480399.1
CDS CAA 90 bp AGAACATCTGTTCCCCAAATCATAACTGCCAAGTTCTTCGTGTACTaGGAATCTCCTTGGGTTACTTGTAGCTGGTGCCATTTCTCCTCA +
Preference number: 6 (lower is better)
Translates to: RTSVPQIITAKFFVY*ESPWVTCSWCHFSS
Trigger: TGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGGAACAGATGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476079.5
CDS CCA 72 bp ATAACTGCCAAGTTCTTCGTGTACTTGGAATCTCCTTaGGTTACTTGTAGCTGGTGCCATTTCTCCTCATCA +
Preference number: 6 (lower is better)
Translates to: ITAKFFVYLESP*VTCSWCHFSSS
Trigger: TGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476079.5
CDS CAA 72 bp GAGTCTCTGTGCAATTTCAGTTTCATCCACAGTTTCTaGTGCTATTCTGTCATACAAACACTCGCTGCCAAG +
Preference number: 6 (lower is better)
Translates to: ESLCNFSFIHSF*CYSVIQTLAAK
Trigger: CTTGGCAGCGAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000476096.1
CDS CAA 72 bp GAGTCTCTGTGCAATTTCAGTTTCATCCACAGTTTCTaGTGCTATTCTGTCATACAAACACTCTCTGACGAT +
Preference number: 6 (lower is better)
Translates to: ESLCNFSFIHSF*CYSVIQTLSDD
Trigger: ATCGTCAGAGAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371833.4
ENST00000463562.1
ENST00000476079.5