RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BBS12 (Homo sapiens)

Ensembl gene IDs: ENSG00000181004

Ensembl transcript IDs: ENST00000314218.8, ENST00000433287.1, ENST00000542236.5

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACTATCCACTATaGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATG +
Preference number: 1 (lower is better)
Translates to: TSQAEEQTVGRDYPL*ALSVPAYLLGMSRM
Trigger: CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATAGTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR CCA 90 bp CTATTGGTCCTCCCTTGGAACTTAGAGTTGATTGAGTCAAGACCTTaGGGGACAGGACTGAGGTTAATACTGCAGGTTGGCTTCATCCTG +
Preference number: 1 (lower is better)
Translates to: LLVLPWNLELIESRP*GTGLRLILQVGFIL
Trigger: CAGGATGAAGCCAACCTGCAGTATTAACCTCAGTCCTGTCCCCCAAGGTCTTGACTCAATCAACTCTAAGTTCCAAGGGAGGACCAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR GCA 90 bp GCAGACTGTTGGAAGAGACTATCCACTATGGGCTCTGAGTGTCCCTaGATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTA +
Preference number: 1 (lower is better)
Translates to: ADCWKRLSTMGSECP*ILTGYVKNARTLSL
Trigger: TAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATAGTCTCTTCCAACAGTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR TCA 90 bp CTAATAAAAAGACCTATTGGTCCTCCCTTGGAACTTAGAGTTGATTaGGTCAAGACCTTGGGGGACAGGACTGAGGTTAATACTGCAGGT +
Preference number: 1 (lower is better)
Translates to: LIKRPIGPPLELRVD*VKTLGDRTEVNTAG
Trigger: ACCTGCAGTATTAACCTCAGTCCTGTCCCCCAAGGTCTTGACTCAATCAACTCTAAGTTCCAAGGGAGGACCAATAGGTCTTTTTATTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR TCA 90 bp GAACTGAATAAAACCAACATGAAGCTCTGGCTACAGCTTTTGCTGTaGGCGATAAGTCCTTTGTTTCTGACCCAGGTGTCTTATGCATTC +
Preference number: 1 (lower is better)
Translates to: ELNKTNMKLWLQLLL*AISPLFLTQVSYAF
Trigger: GAATGCATAAGACACCTGGGTCAGAAACAAAGGACTTATCGCTCACAGCAAAAGCTGTAGCCAGAGCTTCATGTTGGTTTTATTCAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR TCA 90 bp GCCTGCATTAATTGCTATATGAGACCAAATGAACAAATTTGGTACTaGCTAAACAACCCGACTGTCAGGTTAATCAGAGTAGCTGATAGA +
Preference number: 1 (lower is better)
Translates to: ACINCYMRPNEQIWY*LNNPTVRLIRVADR
Trigger: TCTATCAGCTACTCTGATTAACCTGACAGTCGGGTTGTTTAGTCAGTACCAAATTTGTTCATTTGGTCTCATATAGCAATTAATGCAGGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR TCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTACCATGCACAGTTATTaGCAGACATCAACTATTTTC +
Preference number: 2 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTTMHSY*QTSTIF
Trigger: GAAAATAGTTGATGTCTGTCAATAACTGTGCATGGT...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR GCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGGGCTCTGAGTGTCCCTaGATACTTACTGGGTATGTC +
Preference number: 2 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEGSECP*ILTGYV
Trigger: GACATACCCAGTAAGTATGCAGGGACACTCAGAGCC...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR TCA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCAAAGAACATCTCAGGCTaGGGAGCAGACTGTTGGAAG +
Preference number: 2 (lower is better)
Translates to: FILLLCLIIACINCYMRPKNISG*GADCWK
Trigger: CTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTT...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR TCA 90 bp TATCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGACCATGCACAGTTATTaGCAGACATCAACTATTTTC +
Preference number: 2 (lower is better)
Translates to: YPLWALSVPAYLLGMSRMTMHSY*QTSTIF
Trigger: GAAAATAGTTGATGTCTGTCAATAACTGTGCATGGT...CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR TCA 72 bp AGCAGACTGTTGGAAGAGACTATCCACTATGGGCTCTaGGTGTCCCTGCATACTTACTGGGTATGTCAAGAA +
Preference number: 3 (lower is better)
Translates to: SRLLEETIHYGL*VSLHTYWVCQE
Trigger: TTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATAGTCTCTTCCAACAGTCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCCTGAGGAGCAGACTGTaGGAAGAGACTATCCACTAT +
Preference number: 3 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPLRSRL*EETIHY
Trigger: ATAGTGGATAGTCTCTTCCAACAGTCTGCTCCTCAG...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR CAA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCGACCATGCACAGTTATaGACAGACATCAACTATTTT +
Preference number: 3 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGDHAQL*TDINYF
Trigger: AAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR-3UTR CAA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGACCATGCACAGTTATaGACAGACATCAACTATTTT +
Preference number: 3 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLDHAQL*TDINYF
Trigger: AAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR GCA 72 bp GTTGGCTTCATCCTGCTGCTGTGTCTGATAATAGCCTaGATTAATTGCTATATGAGACCAAATGAACAAATT +
Preference number: 3 (lower is better)
Translates to: VGFILLLCLIIA*INCYMRPNEQI
Trigger: AATTTGTTCATTTGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAAGCCAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR TCA 72 bp AATTGCTATATGAGACCAAATGAACAAATTTGGTACTaGCTAAACAACCCGACTGTCAGGTTAATCAGAGTA +
Preference number: 3 (lower is better)
Translates to: NCYMRPNEQIWY*LNNPTVRLIRV
Trigger: TACTCTGATTAACCTGACAGTCGGGTTGTTTAGTCAGTACCAAATTTGTTCATTTGGTCTCATATAGCAATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR CCA 72 bp GTCATAAAGTATAATAAATTGTCCTTCACTACATTCTaGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTT +
Preference number: 3 (lower is better)
Translates to: VIKYNKLSFTTF*LPNKKTYWSSL
Trigger: AAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATTTATTATACTTTATGAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTTCTCCTACAGGGGGCTaGAGTTCCCGGCTTCCCACC +
Preference number: 4 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTSPTGG*SSRLPT
Trigger: GGTGGGAAGCCGGGAACTCCAGCCCCCTGTAGGAGA...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTCGCAGTTTGCGCATGTaGGAAGAGGGGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTRSLRM*EEGLLE
Trigger: CTCCAGAAGCCCCTCTTCGCACATGCGCAAACTGCG...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTCCCCGTCCGCAGTTTaGGCATGTGCGAAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPSPSAV*ACAKRG
Trigger: GCCCCTCTTCGCACATGCGCAAACTGCGGACGGGGA...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGCACCTGTACTGCTCCTaGAGCCTCTGCAAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWHLYCS*SLCKSL
Trigger: CAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTG...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTCAACATCCAAAGGGCTaGTTCTCCAGAAGGTCACGC +
Preference number: 4 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTQHPKG*FSRRSR
Trigger: GCGTGACCTTCTGGAGAAGCAGCCCTTTGGATGTTG...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp ATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACGCGAAGAGGGGCTTCTaGAGGAGCCGGGGGCTTAGT +
Preference number: 4 (lower is better)
Translates to: IQVWPRTSQAEEQTVGRDAKRGF*RSRGLS
Trigger: ACTAAGCCCCCGGCTCCTCCAGAAGCCCCTCTTCGC...GTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTGGCTCTGAGTGTCCCTaGATACTTACTGGGTATGTC +
Preference number: 4 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTGSECP*ILTGYV
Trigger: GACATACCCAGTAAGTATGCAGGGACACTCAGAGCC...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGAAGAACATCTCAGGCTaGGGAGCAGACTGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWKNISG*GADCWK
Trigger: CTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGTCCCCGTCCGCAGTTTaGGCATGTGCGAAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLSPSAV*ACAKRG
Trigger: GCCCCTCTTCGCACATGCGCAAACTGCGGACGGGGA...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGCAAGAGGAAGTATTATaGAGCCACCCTGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWQEEVL*SHPEQA
Trigger: TGCCTGCTCAGGGTGGCTGCATAATACTTCCTCTTG...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAATCTCCTACAGGGGGCTaGAGTTCCCGGCTTCCCACC +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLESPTGG*SSRLPT
Trigger: GGTGGGAAGCCGGGAACTCCAGCCCCCTGTAGGAGA...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTGAGAGGCAACATCTTTaGGACCATGCAATTCCTCTA +
Preference number: 4 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTERQHL*DHAIPL
Trigger: TAGAGGAATTGCATGGTCTCAAAGATGTTGCCTCTC...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTCACACTGCCATTCACTaGGCCGATTACCAACCGCTT +
Preference number: 4 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCHTAIH*ADYQPL
Trigger: AAGCGGTTGGTAATCGGCTCAGTGAATGGCAGTGTG...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTGTAGGCCACCTGTACTaGTCCTGCAGCCTCTGCAAA +
Preference number: 4 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPVGHLY*SCSLCK
Trigger: TTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTAC...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCGGCCAGACGCGATTCTaGCTGGGACAGCAACACCAA +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGGQTRF*LGQQHQ
Trigger: TTGGTGTTGCTGTCCCAGCCAGAATCGCGTCTGGCC...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGAACACCTGTAACACGTaGTTTGCCCACAGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWNTCNT*FAHSSS
Trigger: AGAAGAACTGTGGGCAAATCACGTGTTACAGGTGTT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGCACCTGTACTGCTCCTaGAGCCTCTGCAAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEHLYCS*SLCKSL
Trigger: CAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTG...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCGTAGGCCACCTGTACTaGTCCTGCAGCCTCTGCAAA +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGVGHLY*SCSLCK
Trigger: TTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTAC...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTCAACATCCAAAGGGCTaGTTCTCCAGAAGGTCACGC +
Preference number: 4 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPQHPKG*FSRRSR
Trigger: GCGTGACCTTCTGGAGAAGCAGCCCTTTGGATGTTG...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAGAGCCAGAGTCTGTaGCATTTTGCAGATGATGTT +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWESQSL*HFADDV
Trigger: AACATCATCTGCAAAATGCCACAGACTCTGGCTCTC...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTCTTGAACTGCTTCATTaGGAAGTTGTCCCACTGCAC +
Preference number: 4 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCLELLH*EVVPLH
Trigger: GTGCAGTGGGACAACTTCTCAATGAAGCAGTTCAAG...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAAAGAACATCTCAGGCTaGGGAGCAGACTGTTGGAAG +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGKNISG*GADCWK
Trigger: CTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTGCCTCTGCAAAAGCCTaGATCACACTGCCATTCACT +
Preference number: 4 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPASAKA*ITLPFT
Trigger: AGTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGC...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTGCGAAGAGGGGCTTCTaGAGGAGCCGGGGGCTTAGT +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFAKRGF*RSRGLS
Trigger: ACTAAGCCCCCGGCTCCTCCAGAAGCCCCTCTTCGC...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGAGGTTCACCTTGAACTaGATTAACACCTGTAACACG +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWRFTLN*INTCNT
Trigger: CGTGTTACAGGTGTTAATCCAGTTCAAGGTGAACCT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCCATCTGTGCAGTAACTaGGTTAGTGAGCACGGCCGT +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGHLCSN*VSEHGR
Trigger: ACGGCCGTGCTCACTAACCCAGTTACTGCACAGATG...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGAGACTATCCACTATaGGCTCTGAGTGTCCCTGCA +
Preference number: 4 (lower is better)
Translates to: STMGSECPCILTGYVKNARDYPL*ALSVPA
Trigger: TGCAGGGACACTCAGAGCCCATAGTGGATAGTCTCT...TGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAATTATGCAGCCACCCTaGGCAGGCATGGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGIMQPP*AGMVFF
Trigger: AAAGAAAACCATGCCTGCTCAGGGTGGCTGCATAAT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTTTTCAGAGATTGCTCTaGAAGAATATGAAGACAGCT +
Preference number: 4 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTFQRLL*KNMKTA
Trigger: AGCTGTCTTCATATTCTTGCAGAGCAATCTCTGAAA...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCCTTGTTTTCCTCTCCTaGCTCGCTCCTTTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGLVFLS*LAPFSS
Trigger: AGAGGAGAAAGGAGCGAGGCAGGAGAGGAAAACAAG...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS-3UTR CCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAACATCTGTGCAGTAACTaGGTTAGTGAGCACGGCCGT +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLEHLCSN*VSEHGR
Trigger: ACGGCCGTGCTCACTAACCCAGTTACTGCACAGATG...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGTGCAGGCTTTCATCATaGGCCCTTTGTGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEECRLSS*ALCVPP
Trigger: AGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCA...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAGGACAAGGTTCACCTTaGACTGGATTAACACCTGTA +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGGQGSP*TGLTPV
Trigger: TACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCC...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp TCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAGGACAAGGTTCACCTTaGACTGGATTAACACCTGTA +
Preference number: 4 (lower is better)
Translates to: STMGSECPCILTGYVKNAGQGSP*TGLTPV
Trigger: TACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCC...TGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCCACACTGCCATTCACTaGGCCGATTACCAACCGCTT +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPHTAIH*ADYQPL
Trigger: AAGCGGTTGGTAATCGGCTCAGTGAATGGCAGTGTG...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCGTATATTGCCAGAGATaGAGCCAGCCAAGAGGAAGT +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGVYCQR*SQPRGS
Trigger: ACTTCCTCTTGGCTGGCTTCATCTCTGGCAATATAC...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCGCAGTTTGCGCATGTaGGAAGAGGGGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFRSLRM*EEGLLE
Trigger: CTCCAGAAGCCCCTCTTCGCACATGCGCAAACTGCG...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TATCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGTCTGCAGCAGGTATCTaGAAGCAGGCTGTTTTTCAG +
Preference number: 4 (lower is better)
Translates to: YPLWALSVPAYLLGMSRMSAAGI*KQAVFQ
Trigger: CTGAAAAACAGCCTGCTTGCAGATACCTGCTGCAGA...CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGCCTCTGCAAAAGCCTaGATCACACTGCCATTCACT +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTASAKA*ITLPFT
Trigger: AGTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCCAAGAGGAAGTATTATaGAGCCACCCTGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTQEEVL*SHPEQA
Trigger: TGCCTGCTCAGGGTGGCTGCATAATACTTCCTCTTG...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGGCTCTGAGTGTCCCTaGATACTTACTGGGTATGTC +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTGSECP*ILTGYV
Trigger: GACATACCCAGTAAGTATGCAGGGACACTCAGAGCC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTCCACGCCTCAATCTTTaGTGTAACAACGTCATAAAC +
Preference number: 4 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCPRLNL*CNNVIN
Trigger: GTTTATGACGTTGTTACACCAAAGATTGAGGCGTGG...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTGCAGGCTTTCATCATaGGCCCTTTGTGTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTCRLSS*ALCVPP
Trigger: AGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCA...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTCTATTGGTCCTCCCTTaGAACTTAGAGTTGATTGAG +
Preference number: 4 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCLLVLP*NLELIE
Trigger: CTCAATCAACTCTAAGTTCCAAGGGAGGACCAATAG...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp ATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACGAAATGGTCAGTGTTTaGGAGGCAACATCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: IQVWPRTSQAEEQTVGRDEMVSV*EATSLR
Trigger: TCTCAAAGATGTTGCCTCTCAAACACTGACCATTTC...GTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGTGCACACAAGCATTCTaGTATTGCAGCTGTACTGCT +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEECTQAF*YCSCTA
Trigger: AGCAGTACAGCTGCAATATCAGAATGCTTGTGTGCA...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAATTCTTCAACTGCACTaGTCCAAGCACCAACAAGAA +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGILQLH*SKHQQE
Trigger: TTCTTGTTGGTGCTTGGAGCAGTGCAGTTGAAGAAT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTCTACTAACTTCATaGTGCTGTGATCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGLLLTS*CCDLHD
Trigger: GTCATGGAGATCACAGCAGCATGAAGTTAGTAGAAG...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTATGGTTTTGTACAGTTaGCTTGTTGCACACAAGCAT +
Preference number: 4 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCMVLYS*LVAHKH
Trigger: ATGCTTGTGTGCAACAAGGCAACTGTACAAAACCAT...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAAAGCCTGCATCACACTaGCATTCACTGAGCCGATTA +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLEKPASH*HSLSRL
Trigger: TAATCGGCTCAGTGAATGGCAGTGTGATGCAGGCTT...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCAGACGCGATTCTGGCTaGGACAGCAACACCAAAAAC +
Preference number: 4 (lower is better)
Translates to: KQLITQAYNITHCVQAFIRRDSG*DSNTKN
Trigger: GTTTTTGGTGTTGCTGTCCCAGCCAGAATCGCGTCT...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGATTCTGATGAGTAATTaGCAGTGTTATATAGGAGAG +
Preference number: 4 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWILMSN*QCYIGE
Trigger: CTCTCCTATATAACACTGCCAATTACTCATCAGAAT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAATACTGACACAACAGTaGTATATCCTGGACAAACAC +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGILTQQ*YILDKH
Trigger: GTGTTTGTCCAGGATATATCACTGTTGTGTCAGTAT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAACTATTCGCACAGGCTaGTTCTGCAATTCCTTGATC +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLETIRTG*FCNSLI
Trigger: GATCAAGGAATTGCAGAATCAGCCTGTGCGAATAGT...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGTCTGAGCTGTCTTCTTaGAGCCGCATGCTATCTAAT +
Preference number: 4 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLSELSS*SRMLSN
Trigger: ATTAGATAGCATGCGGCTTCAAGAAGACAGCTCAGA...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp TCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCATGCTCTGCAAGAATATaGAGACAGCTAAGACACAAA +
Preference number: 4 (lower is better)
Translates to: STMGSECPCILTGYVKNACSARI*RQLRHK
Trigger: TTTGTGTCTTAGCTGTCTTCATATTCTTGCAGAGCA...TGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCGTATATTGCCAGAGATaGAGCCAGCCAAGAGGAAGT +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPVYCQR*SQPRGS
Trigger: ACTTCCTCTTGGCTGGCTTCATCTCTGGCAATATAC...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp ATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACCATCACCATGTATCATaGTCTATTTTCCAGAAGCCT +
Preference number: 4 (lower is better)
Translates to: IQVWPRTSQAEEQTVGRDHHHVS*SIFQKP
Trigger: AGGCTTCTGGAAAATAGATCATGATACATGGTGATG...GTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS-3UTR GCA 90 bp ATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACGTTTTGTGCTTGAACTaGTTCATTGAGAAGTTGTCC +
Preference number: 4 (lower is better)
Translates to: IQVWPRTSQAEEQTVGRDVLCLN*FIEKLS
Trigger: GGACAACTTCTCAATGAAGCAGTTCAAGCACAAAAC...GTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCTCTGCAGCAGGTATCTaGAAGCAGGCTGTTTTTCAG +
Preference number: 4 (lower is better)
Translates to: KQLITQAYNITHCVQAFISAAGI*KQAVFQ
Trigger: CTGAAAAACAGCCTGCTTGCAGATACCTGCTGCAGA...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGTTAGTATTGACTGTCTaGAGCAGGTATCTGCAAGCA +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEELVLTV*SRYLQA
Trigger: TGCTTGCAGATACCTGCTGCAGACAGTCAATACTAA...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCACACAAAAATTCAACTaGACCACCTCCAAGGAAGAC +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGTQKFN*TTSKED
Trigger: GTCTTCCTTGGAGGTGGTGCAGTTGAATTTTTGTGT...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAAGTGATTTGACAGAGTaGTTCAAGAATGCACTTTGC +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGSDLTE*FKNALC
Trigger: GCAAAGTGCATTCTTGAAGCACTCTGTCAAATCACT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS-3UTR CCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGAGACGCGATTCTGGCTaGGACAGCAACACCAAAAAC +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWRRDSG*DSNTKN
Trigger: GTTTTTGGTGTTGCTGTCCCAGCCAGAATCGCGTCT...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGCAGAAAGGTTGGAAATaGTCAGTGTTTGAGAGGCAA +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEQKGWK*SVFERQ
Trigger: TTGCCTCTCAAACACTGACCATTTCCAACCTTTCTG...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAGTCTCCCAGAAAGGTTaGAAATGGTCAGTGTTTGAG +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLEVSQKG*KWSVFE
Trigger: CTCAAACACTGACCATTTCCAACCTTTCTGGGAGAC...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGTCTCCCAGAAAGGTTaGAAATGGTCAGTGTTTGAG +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTVSQKG*KWSVFE
Trigger: CTCAAACACTGACCATTTCCAACCTTTCTGGGAGAC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAGAGCCAGAGTCTGTaGCATTTTGCAGATGATGTT +
Preference number: 4 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLESQSL*HFADDV
Trigger: AACATCATCTGCAAAATGCCACAGACTCTGGCTCTC...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGAGAGACTATCCACTATaGGCTCTGAGTGTCCCTGCA +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWRDYPL*ALSVPA
Trigger: TGCAGGGACACTCAGAGCCCATAGTGGATAGTCTCT...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAAATGATGAAAGTTGTTaGAGTCCCATGTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGNDESC*SPMCLL
Trigger: AAGAAGACACATGGGACTTCAACAACTTTCATCATT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTGGTAGACAGCAAGTaGAAATTCTTGAAATGTCAA +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGLVDSK*KFLKCQ
Trigger: TTGACATTTCAAGAATTTTCACTTGCTGTCTACCAG...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTATATGTGTTGTTTTGTaGTTGAACTGCTTCATTGAG +
Preference number: 4 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCICVVL*LNCFIE
Trigger: CTCAATGAAGCAGTTCAAGCACAAAACAACACATAT...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGATTCTTCAACTGCACTaGTCCAAGCACCAACAAGAA +
Preference number: 4 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLILQLH*SKHQQE
Trigger: TTCTTGTTGGTGCTTGGAGCAGTGCAGTTGAAGAAT...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTGAAATCCATCTGGTTTaGTTACCCCTTCAGTATTAT +
Preference number: 4 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPEIHLV*LPLQYY
Trigger: ATAATACTGAAGGGGTAAGCAAACCAGATGGATTTC...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCAAAGCCTGCATCACACTaGCATTCACTGAGCCGATTA +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNARTLSLPSPKPASH*HSLSRL
Trigger: TAATCGGCTCAGTGAATGGCAGTGTGATGCAGGCTT...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCTTTGATTTGCATCTGTaGAGTAACTGGGTTAGTGAG +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGFDLHL*SNWVSE
Trigger: CTCACTAACCCAGTTACTGCACAGATGCAAATCAAA...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGTGGGTATGTCAAGAATaGAAGGACTTTGTCTTTACC +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEWVCQE*KDFVFT
Trigger: GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCA...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TATCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGGTTGTCCCACTGCACTaGTTAAATCCAAACTTTCAA +
Preference number: 4 (lower is better)
Translates to: YPLWALSVPAYLLGMSRMVVPLH*LNPNFQ
Trigger: TTGAAAGTTTGGATTTAACCAGTGCAGTGGGACAAC...CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCTTCTTGAAATCCATCTaGTTTGCTTACCCCTTCAGT +
Preference number: 4 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGFLKSI*FAYPFS
Trigger: ACTGAAGGGGTAAGCAAACCAGATGGATTTCAAGAA...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp ACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGAGGTTCACCTTGAACTaGATTAACACCTGTAACACG +
Preference number: 4 (lower is better)
Translates to: TGYVKNARTLSLPSPCPRRFTLN*INTCNT
Trigger: CGTGTTACAGGTGTTAATCCAGTTCAAGGTGAACCT...CCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp ATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACGTTGAATGTATGTGCTaGCTTCAAATTCTGATGAGT +
Preference number: 4 (lower is better)
Translates to: IQVWPRTSQAEEQTVGRDVECMC*LQILMS
Trigger: ACTCATCAGAATTTGAAGCCAGCACATACATTCAAC...GTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAGTTGAATGTATGTGCTaGCTTCAAATTCTGATGAGT +
Preference number: 4 (lower is better)
Translates to: STMGSECPCILTGYVKNAVECMC*LQILMS
Trigger: ACTCATCAGAATTTGAAGCCAGCACATACATTCAAC...TGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGATGGGGACACCAAGATaGAGACATTCTTCAACTGCA +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWMGTPR*RHSSTA
Trigger: TGCAGTTGAAGAATGTCTTCATCTTGGTGTCCCCAT...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGGAGAGGCAACATCTTTaGGACCATGCAATTCCTCTA +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWERQHL*DHAIPL
Trigger: TAGAGGAATTGCATGGTCTCAAAGATGTTGCCTCTC...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGTGCACACAAGCATTCTaGTATTGCAGCTGTACTGCT +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWCTQAF*YCSCTA
Trigger: AGCAGTACAGCTGCAATATCAGAATGCTTGTGTGCA...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCAACTATTCGCACAGGCTaGTTCTGCAATTCCTTGATC +
Preference number: 4 (lower is better)
Translates to: FILLLCLIIACINCYMRPTIRTG*FCNSLI
Trigger: GATCAAGGAATTGCAGAATCAGCCTGTGCGAATAGT...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGTCTGAGCTGTCTTCTTaGAGCCGCATGCTATCTAAT +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWSELSS*SRMLSN
Trigger: ATTAGATAGCATGCGGCTTCAAGAAGACAGCTCAGA...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTATTATGCAGCCACCCTaGGCAGGCATGGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFIMQPP*AGMVFF
Trigger: AAAGAAAACCATGCCTGCTCAGGGTGGCTGCATAAT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGATGAAGCATGAAAAGTaGTTTGACAGAGTGCTTCAA +
Preference number: 4 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEMKHEK*FDRVLQ
Trigger: TTGAAGCACTCTGTCAAATCACTTTTCATGCTTCAT...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS-3UTR GCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGTTTTGTGCTTGAACTaGTTCATTGAGAAGTTGTCC +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTVLCLN*FIEKLS
Trigger: GGACAACTTCTCAATGAAGCAGTTCAAGCACAAAAC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGAACATCTTTGAGACCATaGAATTCCTCTATCAAATCA +
Preference number: 4 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGTSLRP*NSSIKS
Trigger: TGATTTGATAGAGGAATTGCATGGTCTCAAAGATGT...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAACATCTTTGAGACCATaGAATTCCTCTATCAAATCA +
Preference number: 4 (lower is better)
Translates to: STMGSECPCILTGYVKNATSLRP*NSSIKS
Trigger: TGATTTGATAGAGGAATTGCATGGTCTCAAAGATGT...TGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTTTGATTTGCATCTGTaGAGTAACTGGGTTAGTGAG +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTFDLHL*SNWVSE
Trigger: CTCACTAACCCAGTTACTGCACAGATGCAAATCAAA...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCCTATTGGTCCTCCCTTaGAACTTAGAGTTGATTGAG +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPLLVLP*NLELIE
Trigger: CTCAATCAACTCTAAGTTCCAAGGGAGGACCAATAG...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR CAA 72 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTaGTCTTTACCTAGTCCATGTCCTAGGCTTGTGTTT +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNART*SLPSPCPRLVF
Trigger: AAACACAAGCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGCCTTACTGTTGAACTaGTTAATACACTTTCATGAC +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTALLLN*LIHFHD
Trigger: GTCATGAAAGTGTATTAATCAGTTCAACAGTAAGGC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTATGGGGACACCAAGATaGAGACATTCTTCAACTGCA +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFMGTPR*RHSSTA
Trigger: TGCAGTTGAAGAATGTCTTCATCTTGGTGTCCCCAT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCAGAAATGGTCAGTGTTTaGGAGGCAACATCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNARTLSLPSPEMVSV*EATSLR
Trigger: TCTCAAAGATGTTGCCTCTCAAACACTGACCATTTC...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATACTGACACAACAGTaGTATATCCTGGACAAACAC +
Preference number: 4 (lower is better)
Translates to: KQLITQAYNITHCVQAFIILTQQ*YILDKH
Trigger: GTGTTTGTCCAGGATATATCACTGTTGTGTCAGTAT...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTAACACCTGTAACACGTaGTTTGCCCACAGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFNTCNT*FAHSSS
Trigger: AGAAGAACTGTGGGCAAATCACGTGTTACAGGTGTT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTGCTCTGCAAGAATATaGAGACAGCTAAGACACAAA +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPCSARI*RQLRHK
Trigger: TTTGTGTCTTAGCTGTCTTCATATTCTTGCAGAGCA...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAACCATGCACAGTTATTaGCAGACATCAACTATTTTC +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLETMHSY*QTSTIF
Trigger: GAAAATAGTTGATGTCTGTCAATAACTGTGCATGGT...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TATCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGATATGTGTTGTTTTGTaGTTGAACTGCTTCATTGAG +
Preference number: 4 (lower is better)
Translates to: YPLWALSVPAYLLGMSRMICVVL*LNCFIE
Trigger: CTCAATGAAGCAGTTCAAGCACAAAACAACACATAT...CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCATTAGTATTGACTGTCTaGAGCAGGTATCTGCAAGCA +
Preference number: 4 (lower is better)
Translates to: FILLLCLIIACINCYMRPLVLTV*SRYLQA
Trigger: TGCTTGCAGATACCTGCTGCAGACAGTCAATACTAA...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGAAATCCATCTGGTTTaGTTACCCCTTCAGTATTAT +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTEIHLV*LPLQYY
Trigger: ATAATACTGAAGGGGTAAGCAAACCAGATGGATTTC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGATGTTGAATGTATGTaGTGGCTTCAAATTCTGATG +
Preference number: 4 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLDVECM*WLQILM
Trigger: CATCAGAATTTGAAGCCAGCACATACATTCAACATC...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCATACTATTATGGAAATaGGGACACCAAGATGAAGAC +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTILLWK*GHQDED
Trigger: GTCTTCATCTTGGTGTCCCCATTTCCATAATAGTAT...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCACCACGCCTCAATCTTTaGTGTAACAACGTCATAAAC +
Preference number: 4 (lower is better)
Translates to: FILLLCLIIACINCYMRPPRLNL*CNNVIN
Trigger: GTTTATGACGTTGTTACACCAAAGATTGAGGCGTGG...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCAATGATGAAAGTTGTTaGAGTCCCATGTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: KQLITQAYNITHCVQAFINDESC*SPMCLL
Trigger: AAGAAGACACATGGGACTTCAACAACTTTCATCATT...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCGCCTTACTGTTGAACTaGTTAATACACTTTCATGAC +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPALLLN*LIHFHD
Trigger: GTCATGAAAGTGTATTAATCAGTTCAACAGTAAGGC...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR TCA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCCTGGTAGACAGCAAGTaGAAATTCTTGAAATGTCAA +
Preference number: 4 (lower is better)
Translates to: KQLITQAYNITHCVQAFILVDSK*KFLKCQ
Trigger: TTGACATTTCAAGAATTTTCACTTGCTGTCTACCAG...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCATTTTGTTTACGACTCTaGAAGCCATCACCATGTATC +
Preference number: 4 (lower is better)
Translates to: FILLLCLIIACINCYMRPFCLRL*KPSPCI
Trigger: GATACATGGTGATGGCTTGCAGAGTCGTAAACAAAA...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCAATGACTCAAGCCTACTaGCAACTCTACCAAATCATT +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNARTLSLPSPMTQAY*QLYQII
Trigger: AATGATTTGGTAGAGTTGGCAGTAGGCTTGAGTCAT...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCTTCTACTAACTTCATaGTGCTGTGATCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFLLLTS*CCDLHD
Trigger: GTCATGGAGATCACAGCAGCATGAAGTTAGTAGAAG...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGATGGTTTTGTACAGTTaGCTTGTTGCACACAAGCAT +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWMVLYS*LVAHKH
Trigger: ATGCTTGTGTGCAACAAGGCAACTGTACAAAACCAT...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTACACAAAAATTCAACTaGACCACCTCCAAGGAAGAC +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFTQKFN*TTSKED
Trigger: GTCTTCCTTGGAGGTGGTGCAGTTGAATTTTTGTGT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTTCAGAGATTGCTCTaGAAGAATATGAAGACAGCT +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPFQRLL*KNMKTA
Trigger: AGCTGTCTTCATATTCTTGCAGAGCAATCTCTGAAA...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATTTCTGCCATCCATTTaGCAGGAATTTAAGCACAGT +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNARTLSLPSPFLPSI*QEFKHS
Trigger: ACTGTGCTTAAATTCCTGGCAAATGGATGGCAGAAA...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCGATGTTGAATGTATGTaGTGGCTTCAAATTCTGATG +
Preference number: 4 (lower is better)
Translates to: KQLITQAYNITHCVQAFIDVECM*WLQILM
Trigger: CATCAGAATTTGAAGCCAGCACATACATTCAACATC...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGTGGGTATGTCAAGAATaGAAGGACTTTGTCTTTACC +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWWVCQE*KDFVFT
Trigger: GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCA...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCAAGAGTGCTTCAAGAATaGACTTTGCACTTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: FILLLCLIIACINCYMRPRVLQE*TLHLFS
Trigger: GGAAAACAAGTGCAAAGTGCATTCTTGAAGCACTCT...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS-3UTR GCA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAAATGATTACAATACTTaGGTGTCTGTCTGGGATATA +
Preference number: 4 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLENDYNT*VSVWDI
Trigger: TATATCCCAGACAGACACGCAAGTATTGTAATCATT...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS-3UTR CCA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCAGTTGTCCCACTGCACTaGTTAAATCCAAACTTTCAA +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNARTLSLPSPVVPLH*LNPNFQ
Trigger: TTGAAAGTTTGGATTTAACCAGTGCAGTGGGACAAC...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGTTACTGATACTATTATaGAAATGGGGACACCAAGAT +
Preference number: 4 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLLLILL*KWGHQD
Trigger: ATCTTGGTGTCCCCATTTCCATAATAGTATCAGTAA...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGTTCTTGAAATCCATCTaGTTTGCTTACCCCTTCAGT +
Preference number: 4 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWFLKSI*FAYPFS
Trigger: ACTGAAGGGGTAAGCAAACCAGATGGATTTCAAGAA...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCAACAGTGATATATCCTaGACAAACACAAGAAGAAGT +
Preference number: 4 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTNSDIS*TNTRRS
Trigger: ACTTCTTCTTGTGTTTGTCCAGGATATATCACTGTT...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTATGACTCAAGCCTACTaGCAACTCTACCAAATCATT +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFMTQAY*QLYQII
Trigger: AATGATTTGGTAGAGTTGGCAGTAGGCTTGAGTCAT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR GCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTTTTCTGCCATCCATTTaGCAGGAATTTAAGCACAGT +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFFLPSI*QEFKHS
Trigger: ACTGTGCTTAAATTCCTGGCAAATGGATGGCAGAAA...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCATTCTGATGAGTAATTaGCAGTGTTATATAGGAGAG +
Preference number: 4 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPILMSN*QCYIGE
Trigger: CTCTCCTATATAACACTGCCAATTACTCATCAGAAT...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTATACTATTATGGAAATaGGGACACCAAGATGAAGAC +
Preference number: 4 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFILLWK*GHQDED
Trigger: GTCTTCATCTTGGTGTCCCCATTTCCATAATAGTAT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CCA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATTACTGATACTATTATaGAAATGGGGACACCAAGAT +
Preference number: 4 (lower is better)
Translates to: CILTGYVKNARTLSLPSPLLILL*KWGHQD
Trigger: ATCTTGGTGTCCCCATTTCCATAATAGTATCAGTAA...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
3UTR CAA 72 bp CAAAGCTCCCTTTATTGGGTCATAAAGTATAATAAATaGTCCTTCACTACATTCTGGCTGCCTAATAAAAAG +
Preference number: 4 (lower is better)
Translates to: QSSLYWVIKYNK*SFTTFWLPNKK
Trigger: CTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATTTATTATACTTTATGACCCAATAAAGGGAGCTTTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 90 bp GGGGCTGGAGTTCCCGGCTTCCCACCGGCCAGACGCGATTCTGGCTaGGACAGCAACACCAAAAACGCCAGGGCTAGGGAGCCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: GAGVPGFPPARRDSG*DSNTKNARAREPSS
Trigger: GGAACTGGGCTCCCTAGCCCTGGCGTTTTTGGTGTTGCTGTCCCAGCCAGAATCGCGTCTGGCCGGTGGGAAGCCGGGAACTCCAGCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 90 bp ACCATGTATCATGATCTCGCTCCTTTCTCCTCTCCTACAGGGGGCTaGAGTTCCCGGCTTCCCACCGGCCAGACGCGATTCTGGCTGGGA +
Preference number: 5 (lower is better)
Translates to: TMYHDLAPFSSPTGG*SSRLPTGQTRFWLG
Trigger: TCCCAGCCAGAATCGCGTCTGGCCGGTGGGAAGCCGGGAACTCCAGCCCCCTGTAGGAGAGGAGAAAGGAGCGAGATCATGATACATGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000314218.8
CDS-3UTR CAA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGTTCCCCGTCCGCAGTTaGCGCATGTGCGAAGAGGGG +
Preference number: 5 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEFPVRS*RMCEEG
Trigger: CCCCTCTTCGCACATGCGCAAACTGCGGACGGGGAA...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGTTCCCCGTCCGCAGTTaGCGCATGTGCGAAGAGGGG +
Preference number: 5 (lower is better)
Translates to: TGYVKNARTLSLPSPCPRFPVRS*RMCEEG
Trigger: CCCCTCTTCGCACATGCGCAAACTGCGGACGGGGAA...CCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGGAACTCCCATGTGTCTTCTTTaGTTTACGACTCTGCAAGCC +
Preference number: 5 (lower is better)
Translates to: PTVCRLSSWALCVPPVGTPMCLL*FTTLQA
Trigger: GGCTTGCAGAGTCGTAAACAAAAGAAGACACATGGG...AGTTCCCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp GCCCACACAATCTTCATTCACTTGTGTAATGTAGGCCACCTGTACTaGTCCTGCAGCCTCTGCAAAAGCCTGCATCACACTGCCATTCAC +
Preference number: 5 (lower is better)
Translates to: AHTIFIHLCNVGHLY*SCSLCKSLHHTAIH
Trigger: GTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTACATTACACAAGTGAATGAAGATTGTGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp CCACCTGTACTGCTCCTGCAGCCTCTGCAAAAGCCTGCATCACACTaGCATTCACTGAGCCGATTACCAACCGCTTACTGTTTATACATT +
Preference number: 5 (lower is better)
Translates to: PPVLLLQPLQKPASH*HSLSRLPTAYCLYI
Trigger: AATGTATAAACAGTAAGCGGTTGGTAATCGGCTCAGTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp ATAAGATTGCGATTCTGTTGTTCCTATCTACAACATCCAAAGGGCTaGTTCTCCAGAAGGTCACGCAGACCCCGTCGCCCACACAATCTT +
Preference number: 5 (lower is better)
Translates to: IRLRFCCSYLQHPKG*FSRRSRRPRRPHNL
Trigger: AAGATTGTGTGGGCGACGGGGTCTGCGTGACCTTCTGGAGAAGCAGCCCTTTGGATGTTGTAGATAGGAACAACAGAATCGCAATCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGACAATCTTCATTCACTaGTGTAATGTAGGCCACCTG +
Preference number: 5 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWTIFIH*CNVGHL
Trigger: CAGGTGGCCTACATTACACAAGTGAATGAAGATTGT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTCAGTTGGTCTGTATATaGCCAGAGATGAAGCCAGCC +
Preference number: 5 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPQLVCI*PEMKPA
Trigger: GGCTGGCTTCATCTCTGGCAATATACAGACCAACTG...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACCCATGTGTCTTCTTTaGTTTACGACTCTGCAAGCC +
Preference number: 5 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGPMCLL*FTTLQA
Trigger: GGCTTGCAGAGTCGTAAACAAAAGAAGACACATGGG...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGAAGATTGCGATTCTGTaGTTCCTATCTACAACATCC +
Preference number: 5 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWKIAIL*FLSTTS
Trigger: GGATGTTGTAGATAGGAACAACAGAATCGCAATCTT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTGGAAGAATGCAAGGACTTaGTCTTTACCTAGTCCATGT +
Preference number: 5 (lower is better)
Translates to: HNPLCAGFHHGPFVFLLWKNART*SLPSPC
Trigger: ACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTT...CCACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTGAGGAGCAGACTGTaGGAAGAGACTATCCACTAT +
Preference number: 5 (lower is better)
Translates to: LWALSVPAYLLGMSRMQGLRSRL*EETIHY
Trigger: ATAGTGGATAGTCTCTTCCAACAGTCTGCTCCTCAG...TCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAGGAAATGGTCAGTGTTaGAGAGGCAACATCTTTGAG +
Preference number: 5 (lower is better)
Translates to: STMGSECPCILTGYVKNAGNGQC*RGNIFE
Trigger: CTCAAAGATGTTGCCTCTCAAACACTGACCATTTCC...TGCATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAACCTGTAACACGTGATTaGCCCACAGTTCTTCTGAGC +
Preference number: 5 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLEPVTRD*PTVLLS
Trigger: GCTCAGAAGAACTGTGGGCAAATCACGTGTTACAGG...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCAGTTGGTCTGTATATaGCCAGAGATGAAGCCAGCC +
Preference number: 5 (lower is better)
Translates to: TGYVKNARTLSLPSPCPRQLVCI*PEMKPA
Trigger: GGCTGGCTTCATCTCTGGCAATATACAGACCAACTG...CCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 90 bp GGGCCTAGGAAAGTTCTTCCTGTTTCCGCGAATGATGAAAGTTGTTaGAGTCCCATGTGTCTTCTTTTGTTTACGACTCTGCAAGCCATC +
Preference number: 5 (lower is better)
Translates to: GPRKVLPVSANDESC*SPMCLLLFTTLQAI
Trigger: GATGGCTTGCAGAGTCGTAAACAAAAGAAGACACATGGGACTTCAACAACTTTCATCATTCGCGGAAACAGGAAGAACTTTCCTAGGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS-3UTR CAA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTAATGGTTTTGTACAGTaGCCTTGTTGCACACAAGCA +
Preference number: 5 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPNGFVQ*PCCTQA
Trigger: TGCTTGTGTGCAACAAGGCAACTGTACAAAACCATT...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTAAGATTGCGATTCTGTaGTTCCTATCTACAACATCC +
Preference number: 5 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCKIAIL*FLSTTS
Trigger: GGATGTTGTAGATAGGAACAACAGAATCGCAATCTT...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTAGAGTCTGTGGCATTTaGCAGATGATGTTGAATGTA +
Preference number: 5 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCRVCGI*QMMLNV
Trigger: TACATTCAACATCATCTGCAAAATGCCACAGACTCT...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TATCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCCTTGGAACTTAGAGTaGATTGAGTCAAGACCTTGG +
Preference number: 5 (lower is better)
Translates to: YPLWALSVPAYLLGMSRMPWNLE*IESRPW
Trigger: CCAAGGTCTTGACTCAATCAACTCTAAGTTCCAAGG...CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGCCTTGGAACTTAGAGTaGATTGAGTCAAGACCTTGG +
Preference number: 5 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEEPWNLE*IESRPW
Trigger: CCAAGGTCTTGACTCAATCAACTCTAAGTTCCAAGG...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCGAATGCACTTTGCACTaGTTTTCCTCTCCTGCCTCG +
Preference number: 5 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPECTLH*FSSPAS
Trigger: CGAGGCAGGAGAGGAAAACAAGTGCAAAGTGCATTC...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS TCA 90 bp TTAAGCGTTCGGACACATTTCCTTGTACCAGGACAAGGTTCACCTTaGACTGGATTAACACCTGTAACACGTGATTTGCCCACAGTTCTT +
Preference number: 5 (lower is better)
Translates to: LSVRTHFLVPGQGSP*TGLTPVTRDLPTVL
Trigger: AAGAACTGTGGGCAAATCACGTGTTACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCCTGGTACAAGGAAATGTGTCCGAACGCTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp AAGCATTCTGATATTGCAGCTGTACTGCTTCTTCTACTAACTTCATaGTGCTGTGATCTCCATGACTCAAGCCTACTGCCAACTCTACCA +
Preference number: 5 (lower is better)
Translates to: KHSDIAAVLLLLLTS*CCDLHDSSLLPTLP
Trigger: TGGTAGAGTTGGCAGTAGGCTTGAGTCATGGAGATCACAGCAGCATGAAGTTAGTAGAAGAAGCAGTACAGCTGCAATATCAGAATGCTT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp ACGATAGGCACATGTCCAGAACCTATCTTCTTTGATTTGCATCTGTaGAGTAACTGGGTTAGTGAGCACGGCCGTAACCAAATTAATTCC +
Preference number: 5 (lower is better)
Translates to: TIGTCPEPIFFDLHL*SNWVSEHGRNQINS
Trigger: GGAATTAATTTGGTTACGGCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAATCAAAGAAGATAGGTTCTGGACATGTGCCTATCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCGGAAATGGTCAGTGTTaGAGAGGCAACATCTTTGAG +
Preference number: 5 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTGNGQC*RGNIFE
Trigger: CTCAAAGATGTTGCCTCTCAAACACTGACCATTTCC...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTAGAGTTCGTGATGTGTaGTTATCTGCTTCAACCTTT +
Preference number: 5 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPRVRDV*LSASTF
Trigger: AAAGGTTGAAGCAGATAACAACACATCACGAACTCT...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AAATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGTGTACAGTTGCCTTGTaGCACACAAGCATTCTGATA +
Preference number: 5 (lower is better)
Translates to: KFKFGQEHLRLRSRLLEECTVAL*HTSILI
Trigger: TATCAGAATGCTTGTGTGCAACAAGGCAACTGTACA...CTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGCCTGTAACACGTGATTaGCCCACAGTTCTTCTGAGC +
Preference number: 5 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWPVTRD*PTVLLS
Trigger: GCTCAGAAGAACTGTGGGCAAATCACGTGTTACAGG...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TATCCACTATGGGCTCTGAGTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCCTATCTTCTTTGATTaGCATCTGTGCAGTAACTGG +
Preference number: 5 (lower is better)
Translates to: YPLWALSVPAYLLGMSRMPIFFD*HLCSNW
Trigger: CCAGTTACTGCACAGATGCAAATCAAAGAAGATAGG...CATTCTTGACATACCCAGTAAGTATGCAGGGACACTCAGAGCCCATAGTGGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ATTCAAGTTTGGCCAAGAACATCTCAGGCTGAGGAGCAGACTGTTGGAAGAGACCAGAACCTATCTTCTTaGATTTGCATCTGTGCAGTA +
Preference number: 5 (lower is better)
Translates to: IQVWPRTSQAEEQTVGRDQNLSS*ICICAV
Trigger: TACTGCACAGATGCAAATCAAAGAAGATAGGTTCTG...GTCTCTTCCAACAGTCTGCTCCTCAGCCTGAGATGTTCTTGGCCAAACTTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTTTGTGTTCCTCCTGTTGTTATATAGGAGAGTaGAAAGGTATTTCTGCCATC +
Preference number: 5 (lower is better)
Translates to: NITHCVQAFIMGPLCSSCCYIGE*KGISAI
Trigger: GATGGCAGAAATACCTTTCAACTCTCCTATATAACA...ACAGGAGGAACACAAAGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGCCTTCAAGAATGCACTTaGCACTTGTTTTCCTCTCCT +
Preference number: 5 (lower is better)
Translates to: LGMSRMQGLCLYLVHVLGLQECT*HLFSSP
Trigger: AGGAGAGGAAAACAAGTGCAAAGTGCATTCTTGAAG...GCCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542236.5
CDS TCA 90 bp TCCCAGAAAGGTTGGAAATGGTCAGTGTTTGAGAGGCAACATCTTTaGGACCATGCAATTCCTCTATCAAATCAGTATCTGAAGGGACCT +
Preference number: 5 (lower is better)
Translates to: SQKGWKWSVFERQHL*DHAIPLSNQYLKGP
Trigger: AGGTCCCTTCAGATACTGATTTGATAGAGGAATTGCATGGTCTCAAAGATGTTGCCTCTCAAACACTGACCATTTCCAACCTTTCTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp ATGAAAGTTGTTGAAGTCCCATGTGTCTTCTTTTGTTTACGACTCTaGAAGCCATCACCATGTATCATGATCTCGCTCCTTTCTCCTCTC +
Preference number: 5 (lower is better)
Translates to: MKVVEVPCVFFCLRL*KPSPCIMISLLSPL
Trigger: GAGAGGAGAAAGGAGCGAGATCATGATACATGGTGATGGCTTGCAGAGTCGTAAACAAAAGAAGACACATGGGACTTCAACAACTTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000314218.8
CDS CCA 90 bp TTGCTTACCCCTTCAGTATTATCTGTCCTATTAAAATGCCTACTGTaGATTAGTATTGACTGTCTGCAGCAGGTATCTGCAAGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: LLTPSVLSVLLKCLL*ISIDCLQQVSASRL
Trigger: CAGCCTGCTTGCAGATACCTGCTGCAGACAGTCAATACTAATCCACAGTAGGCATTTTAATAGGACAGATAATACTGAAGGGGTAAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp GTGTCCCTGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTACTGTGGATTAGTATaGACTGTCTGCAGCAGGTAT +
Preference number: 5 (lower is better)
Translates to: VSLHTYWVCQECKDFVFTYCGLV*TVCSRY
Trigger: ATACCTGCTGCAGACAGTCAATACTAATCCACAGTA...GGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCAGGGACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAACAAGCATTCTGATATaGCAGCTGTACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLETSILI*QLYCFF
Trigger: GAAGAAGCAGTACAGCTGCAATATCAGAATGCTTGT...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAATTTTGTACAGTTGCCTaGTTGCACACAAGCATTCTG +
Preference number: 5 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLEFCTVA*LHTSIL
Trigger: CAGAATGCTTGTGTGCAACAAGGCAACTGTACAAAA...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCATGTCCTAGGTTTTGTACAGTTGCCTaGTTGCACACAAGCATTCTG +
Preference number: 5 (lower is better)
Translates to: TGYVKNARTLSLPSPCPRFCTVA*LHTSIL
Trigger: CAGAATGCTTGTGTGCAACAAGGCAACTGTACAAAA...CCTAGGACATGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCAGGACAAGGTTCACCTaGAACTGGATTAACACCTGT +
Preference number: 5 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPRTRFT*NWINTC
Trigger: ACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCCT...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGACAATCTTCATTCACTaGTGTAATGTAGGCCACCTG +
Preference number: 5 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLTIFIH*CNVGHL
Trigger: CAGGTGGCCTACATTACACAAGTGAATGAAGATTGT...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCATGGGCCCTGACCATGCACAGTTATaGACAGACATCAACTATTTT +
Preference number: 5 (lower is better)
Translates to: ITQAYNITHCVQAFIMGPDHAQL*TDINYF
Trigger: AAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC...AGGGCCCATGATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 90 bp TTTATCTGTGTGTGTCCATGTCCAGTAATTATTTCACTGTCTGTCTaGAGTACTAACAATACTAAATCCAATGCTCGGCGCCACGCCTCA +
Preference number: 5 (lower is better)
Translates to: FICVCPCPVIISLSV*STNNTKSNARRHAS
Trigger: TGAGGCGTGGCGCCGAGCATTGGATTTAGTATTGTTAGTACTTCAGACAGACAGTGAAATAATTACTGGACATGGACACACACAGATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 90 bp CCATCTGGTTTGCTTACCCCTTCAGTATTATCTGTCCTATTAAAATaGCTACTGTGGATTAGTATTGACTGTCTGCAGCAGGTATCTGCA +
Preference number: 5 (lower is better)
Translates to: PSGLLTPSVLSVLLK*LLWISIDCLQQVSA
Trigger: TGCAGATACCTGCTGCAGACAGTCAATACTAATCCACAGTAGGCATTTTAATAGGACAGATAATACTGAAGGGGTAAGCAAACCAGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGTGTGTTGTTTTGTGCTaGAACTGCTTCATTGAGAAG +
Preference number: 5 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLCVVLC*NCFIEK
Trigger: CTTCTCAATGAAGCAGTTCAAGCACAAAACAACACA...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCTACTGTGGATTAGTATaGACTGTCTGCAGCAGGTAT +
Preference number: 5 (lower is better)
Translates to: KQLITQAYNITHCVQAFIYCGLV*TVCSRY
Trigger: ATACCTGCTGCAGACAGTCAATACTAATCCACAGTA...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp CCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGGAAAGCTGTAACATGTTCTaGAAATCCATCTGGTTTGCT +
Preference number: 5 (lower is better)
Translates to: PSLHSGCLIKRPIGPPLESCNMF*KSIWFA
Trigger: AGCAAACCAGATGGATTTCAAGAACATGTTACAGCT...TTCCAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCACAAGCATTCTGATATaGCAGCTGTACTGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPTSILI*QLYCFF
Trigger: GAAGAAGCAGTACAGCTGCAATATCAGAATGCTTGT...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTGTACAGTTGCCTTGTaGCACACAAGCATTCTGATA +
Preference number: 5 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPCTVAL*HTSILI
Trigger: TATCAGAATGCTTGTGTGCAACAAGGCAACTGTACA...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGAGGACAAGGTTCACCTaGAACTGGATTAACACCTGT +
Preference number: 5 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWRTRFT*NWINTC
Trigger: ACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCCT...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCCCTATCTTCTTTGATTaGCATCTGTGCAGTAACTGG +
Preference number: 5 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPPIFFD*HLCSNW
Trigger: CCAGTTACTGCACAGATGCAAATCAAAGAAGATAGG...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCTTGCAGAACCTATCTTCTTaGATTTGCATCTGTGCAGTA +
Preference number: 5 (lower is better)
Translates to: CPSLHSGCLIKRPIGPPLQNLSS*ICICAV
Trigger: TACTGCACAGATGCAAATCAAAGAAGATAGGTTCTG...CAAGGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCTGTGAAAATTCAAGTTaGGCCAAGAACATCTCAGGC +
Preference number: 5 (lower is better)
Translates to: KQLITQAYNITHCVQAFICENSS*AKNISG
Trigger: GCCTGAGATGTTCTTGGCCAAACTTGAATTTTCACA...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 90 bp ACATGTCCAGAACCTATCTTCTTTGATTTGCATCTGTGCAGTAACTaGGTTAGTGAGCACGGCCGTAACCAAATTAATTCCTTCTGTTTT +
Preference number: 5 (lower is better)
Translates to: TCPEPIFFDLHLCSN*VSEHGRNQINSFCF
Trigger: AAAACAGAAGGAATTAATTTGGTTACGGCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAATCAAAGAAGATAGGTTCTGGACATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 90 bp AGCCAGAGTCTGTGGCATTTTGCAGATGATGTTGAATGTATGTGCTaGCTTCAAATTCTGATGAGTAATTGGCAGTGTTATATAGGAGAG +
Preference number: 5 (lower is better)
Translates to: SQSLWHFADDVECMC*LQILMSNWQCYIGE
Trigger: CTCTCCTATATAACACTGCCAATTACTCATCAGAATTTGAAGCCAGCACATACATTCAACATCATCTGCAAAATGCCACAGACTCTGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTCATCAGAGTTCGTGATGTGTaGTTATCTGCTTCAACCTTT +
Preference number: 5 (lower is better)
Translates to: KQLITQAYNITHCVQAFIRVRDV*LSASTF
Trigger: AAAGGTTGAAGCAGATAACAACACATCACGAACTCT...GATGAAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp AATTGTCCTTCACTACATTCTGGCTGCCTAATAAAAAGACCTATTGGTCCTCCCAGCTGTAACATGTTCTaGAAATCCATCTGGTTTGCT +
Preference number: 5 (lower is better)
Translates to: NCPSLHSGCLIKRPIGPPSCNMF*KSIWFA
Trigger: AGCAAACCAGATGGATTTCAAGAACATGTTACAGCT...GGGAGGACCAATAGGTCTTTTTATTAGGCAGCCAGAATGTAGTGAAGGACAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCATGTGAAAATTCAAGTTaGGCCAAGAACATCTCAGGC +
Preference number: 5 (lower is better)
Translates to: FILLLCLIIACINCYMRPCENSS*AKNISG
Trigger: GCCTGAGATGTTCTTGGCCAAACTTGAATTTTCACA...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 90 bp AACATAAATGGTTTTGTACAGTTGCCTTGTTGCACACAAGCATTCTaGTATTGCAGCTGTACTGCTTCTTCTACTAACTTCATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: NINGFVQLPCCTQAF*YCSCTASSTNFMLL
Trigger: CAGCAGCATGAAGTTAGTAGAAGAAGCAGTACAGCTGCAATATCAGAATGCTTGTGTGCAACAAGGCAACTGTACAAAACCATTTATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp ATAAAAGCAGTTAATAACCCAAGCTTACAACATAACCCACTGTGTGCAGGCTTTAATGGTTTTGTACAGTaGCCTTGTTGCACACAAGCA +
Preference number: 5 (lower is better)
Translates to: IKAVNNPSLQHNPLCAGFNGFVQ*PCCTQA
Trigger: TGCTTGTGTGCAACAAGGCAACTGTACAAAACCATT...AAAGCCTGCACACAGTGGGTTATGTTGTAAGCTTGGGTTATTAACTGCTTTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TGCATACTTACTGGGTATGTCAAGAATGCAAGGACTTTGTCTTTACCTAGTCCAAGAGTCTGTGGCATTTaGCAGATGATGTTGAATGTA +
Preference number: 5 (lower is better)
Translates to: CILTGYVKNARTLSLPSPRVCGI*QMMLNV
Trigger: TACATTCAACATCATCTGCAAAATGCCACAGACTCT...TGGACTAGGTAAAGACAAAGTCCTTGCATTCTTGACATACCCAGTAAGTATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 90 bp AACAAAAGAGTACTGATTCCAGTTCTATATGTGTTGTTTTGTGCTTaGACTGCTTCATTGAGAAGTTGTCCCACTGCACTGGTTAAATCC +
Preference number: 5 (lower is better)
Translates to: NKRVLIPVLYVLFCA*TASLRSCPTALVKS
Trigger: GGATTTAACCAGTGCAGTGGGACAACTTCTCAATGAAGCAGTTCAAGCACAAAACAACACATATAGAACTGGAATCAGTACTCTTTTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS TCA 90 bp CACAGGCTGATTCTGCAATTCCTTGATCACAGGATTATTAGATACTaGCACAACAGTGATATATCCTGGACAAACACAAGAAGAAGTTTC +
Preference number: 5 (lower is better)
Translates to: HRLILQFLDHRIIRY*HNSDISWTNTRRSF
Trigger: GAAACTTCTTCTTGTGTTTGTCCAGGATATATCACTGTTGTGTCAGTATCTAATAATCCTGTGATCAAGGAATTGCAGAATCAGCCTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp GACCATGCACAGTTATTGACAGACATCAACTATTTTCTTCTTGGCAATAGCTGGTGTTATATAGGAGAGTaGAAAGGTATTTCTGCCATC +
Preference number: 5 (lower is better)
Translates to: DHAQLLTDINYFLLGNSWCYIGE*KGISAI
Trigger: GATGGCAGAAATACCTTTCAACTCTCCTATATAACA...CCAGCTATTGCCAAGAAGAAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS-3UTR CAA 90 bp TTCATCCTGCTGCTGTGTCTGATAATAGCCTGCATTAATTGCTATATGAGACCAGACCATGCACAGTTATaGACAGACATCAACTATTTT +
Preference number: 5 (lower is better)
Translates to: FILLLCLIIACINCYMRPDHAQL*TDINYF
Trigger: AAAATAGTTGATGTCTGTCAATAACTGTGCATGGTC...TGGTCTCATATAGCAATTAATGCAGGCTATTATCAGACACAGCAGCAGGATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 90 bp GATGATGTTGAATGTATGTGCTGGCTTCAAATTCTGATGAGTAATTaGCAGTGTTATATAGGAGAGTTGAAAGGTATTTCTGCCATCCAT +
Preference number: 5 (lower is better)
Translates to: DDVECMCWLQILMSN*QCYIGELKGISAIH
Trigger: ATGGATGGCAGAAATACCTTTCAACTCTCCTATATAACACTGCCAATTACTCATCAGAATTTGAAGCCAGCACATACATTCAACATCATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 90 bp TACTATATTCATTCAAGATGTAAGATGAAGGAGAGCCAGAGTCTGTaGCATTTTGCAGATGATGTTGAATGTATGTGCTGGCTTCAAATT +
Preference number: 5 (lower is better)
Translates to: YYIHSRCKMKESQSL*HFADDVECMCWLQI
Trigger: AATTTGAAGCCAGCACATACATTCAACATCATCTGCAAAATGCCACAGACTCTGGCTCTCCTTCATCTTACATCTTGAATGAATATAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 72 bp GTTCCCGGCTTCCCACCGGCCAGACGCGATTCTGGCTaGGACAGCAACACCAAAAACGCCAGGGCTAGGGAG +
Preference number: 6 (lower is better)
Translates to: VPGFPPARRDSG*DSNTKNARARE
Trigger: CTCCCTAGCCCTGGCGTTTTTGGTGTTGCTGTCCCAGCCAGAATCGCGTCTGGCCGGTGGGAAGCCGGGAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 72 bp CATGATCTCGCTCCTTTCTCCTCTCCTACAGGGGGCTaGAGTTCCCGGCTTCCCACCGGCCAGACGCGATTC +
Preference number: 6 (lower is better)
Translates to: HDLAPFSSPTGG*SSRLPTGQTRF
Trigger: GAATCGCGTCTGGCCGGTGGGAAGCCGGGAACTCCAGCCCCCTGTAGGAGAGGAGAAAGGAGCGAGATCATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000314218.8
CDS GCA 72 bp GCCACCTGTACTGCTCCTGCAGCCTCTGCAAAAGCCTaGATCACACTGCCATTCACTGAGCCGATTACCAAC +
Preference number: 6 (lower is better)
Translates to: ATCTAPAASAKA*ITLPFTEPITN
Trigger: GTTGGTAATCGGCTCAGTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CAA 72 bp CACGCAGACCCCGTCGCCCACACAATCTTCATTCACTaGTGTAATGTAGGCCACCTGTACTGCTCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: HADPVAHTIFIH*CNVGHLYCSCS
Trigger: GCTGCAGGAGCAGTACAGGTGGCCTACATTACACAAGTGAATGAAGATTGTGTGGGCGACGGGGTCTGCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CAA 90 bp CCAGAAGGTCACGCAGACCCCGTCGCCCACACAATCTTCATTCACTaGTGTAATGTAGGCCACCTGTACTGCTCCTGCAGCCTCTGCAAA +
Preference number: 6 (lower is better)
Translates to: PEGHADPVAHTIFIH*CNVGHLYCSCSLCK
Trigger: TTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTACATTACACAAGTGAATGAAGATTGTGTGGGCGACGGGGTCTGCGTGACCTTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 72 bp CTGCTCCTGCAGCCTCTGCAAAAGCCTGCATCACACTaGCATTCACTGAGCCGATTACCAACCGCTTACTGT +
Preference number: 6 (lower is better)
Translates to: LLLQPLQKPASH*HSLSRLPTAYC
Trigger: ACAGTAAGCGGTTGGTAATCGGCTCAGTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGCTGCAGGAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 72 bp ATTCACTTGTGTAATGTAGGCCACCTGTACTGCTCCTaGAGCCTCTGCAAAAGCCTGCATCACACTGCCATT +
Preference number: 6 (lower is better)
Translates to: IHLCNVGHLYCS*SLCKSLHHTAI
Trigger: AATGGCAGTGTGATGCAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTACATTACACAAGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 72 bp ATCTTCATTCACTTGTGTAATGTAGGCCACCTGTACTaGTCCTGCAGCCTCTGCAAAAGCCTGCATCACACT +
Preference number: 6 (lower is better)
Translates to: IFIHLCNVGHLY*SCSLCKSLHHT
Trigger: AGTGTGATGCAGGCTTTTGCAGAGGCTGCAGGAGCAGTACAGGTGGCCTACATTACACAAGTGAATGAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp CGGACACATTTCCTTGTACCAGGACAAGGTTCACCTTaGACTGGATTAACACCTGTAACACGTGATTTGCCC +
Preference number: 6 (lower is better)
Translates to: RTHFLVPGQGSP*TGLTPVTRDLP
Trigger: GGGCAAATCACGTGTTACAGGTGTTAATCCAGTTCAAGGTGAACCTTGTCCTGGTACAAGGAAATGTGTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CAA 72 bp ACGATAGGCACATGTCCAGAACCTATCTTCTTTGATTaGCATCTGTGCAGTAACTGGGTTAGTGAGCACGGC +
Preference number: 6 (lower is better)
Translates to: TIGTCPEPIFFD*HLCSNWVSEHG
Trigger: GCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAATCAAAGAAGATAGGTTCTGGACATGTGCCTATCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp GCAGGTATCTGCAAGCAGGCTGTTTTTCAGAGTTCGTaGTGTGTTGTTATCTGCTTCAACCTTTGTCTGAGG +
Preference number: 6 (lower is better)
Translates to: AGICKQAVFQSS*CVVICFNLCLR
Trigger: CCTCAGACAAAGGTTGAAGCAGATAACAACACATCACGAACTCTGAAAAACAGCCTGCTTGCAGATACCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp AGCCTCTGCAAAAGCCTGCATCACACTGCCATTCACTaGGCCGATTACCAACCGCTTACTGTTTATACATTT +
Preference number: 6 (lower is better)
Translates to: SLCKSLHHTAIH*ADYQPLTVYTF
Trigger: AAATGTATAAACAGTAAGCGGTTGGTAATCGGCTCAGTGAATGGCAGTGTGATGCAGGCTTTTGCAGAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp GAATTTAAGCACAGTTGGTCTGTATATTGCCAGAGATaGAGCCAGCCAAGAGGAAGTATTATGCAGCCACCC +
Preference number: 6 (lower is better)
Translates to: EFKHSWSVYCQR*SQPRGSIMQPP
Trigger: GGGTGGCTGCATAATACTTCCTCTTGGCTGGCTTCATCTCTGGCAATATACAGACCAACTGTGCTTAAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS GCA 72 bp ACATGTCCAGAACCTATCTTCTTTGATTTGCATCTGTaGAGTAACTGGGTTAGTGAGCACGGCCGTAACCAA +
Preference number: 6 (lower is better)
Translates to: TCPEPIFFDLHL*SNWVSEHGRNQ
Trigger: TTGGTTACGGCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAATCAAAGAAGATAGGTTCTGGACATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CAA 90 bp ATAATACAAACGATAGGCACATGTCCAGAACCTATCTTCTTTGATTaGCATCTGTGCAGTAACTGGGTTAGTGAGCACGGCCGTAACCAA +
Preference number: 6 (lower is better)
Translates to: IIQTIGTCPEPIFFD*HLCSNWVSEHGRNQ
Trigger: TTGGTTACGGCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAATCAAAGAAGATAGGTTCTGGACATGTGCCTATCGTTTGTATTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp GTGAGGTCACCCTCAATGAGAACTATTCGCACAGGCTaGTTCTGCAATTCCTTGATCACAGGATTATTAGAT +
Preference number: 6 (lower is better)
Translates to: VRSPSMRTIRTG*FCNSLITGLLD
Trigger: ATCTAATAATCCTGTGATCAAGGAATTGCAGAATCAGCCTGTGCGAATAGTTCTCATTGAGGGTGACCTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 72 bp GAACCTATCTTCTTTGATTTGCATCTGTGCAGTAACTaGGTTAGTGAGCACGGCCGTAACCAAATTAATTCC +
Preference number: 6 (lower is better)
Translates to: EPIFFDLHLCSN*VSEHGRNQINS
Trigger: GGAATTAATTTGGTTACGGCCGTGCTCACTAACCCAGTTACTGCACAGATGCAAATCAAAGAAGATAGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CCA 72 bp CATTCAAGATGTAAGATGAAGGAGAGCCAGAGTCTGTaGCATTTTGCAGATGATGTTGAATGTATGTGCTGG +
Preference number: 6 (lower is better)
Translates to: HSRCKMKESQSL*HFADDVECMCW
Trigger: CCAGCACATACATTCAACATCATCTGCAAAATGCCACAGACTCTGGCTCTCCTTCATCTTACATCTTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp GGTTGGAAATGGTCAGTGTTTGAGAGGCAACATCTTTaGGACCATGCAATTCCTCTATCAAATCAGTATCTG +
Preference number: 6 (lower is better)
Translates to: GWKWSVFERQHL*DHAIPLSNQYL
Trigger: CAGATACTGATTTGATAGAGGAATTGCATGGTCTCAAAGATGTTGCCTCTCAAACACTGACCATTTCCAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS TCA 72 bp GGTTTTGTACAGTTGCCTTGTTGCACACAAGCATTCTaGTATTGCAGCTGTACTGCTTCTTCTACTAACTTC +
Preference number: 6 (lower is better)
Translates to: GFVQLPCCTQAF*YCSCTASSTNF
Trigger: GAAGTTAGTAGAAGAAGCAGTACAGCTGCAATATCAGAATGCTTGTGTGCAACAAGGCAACTGTACAAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp GTGTGTCCATGTCCAGTAATTATTTCACTGTCTGTCTaGAGTACTAACAATACTAAATCCAATGCTCGGCGC +
Preference number: 6 (lower is better)
Translates to: VCPCPVIISLSV*STNNTKSNARR
Trigger: GCGCCGAGCATTGGATTTAGTATTGTTAGTACTTCAGACAGACAGTGAAATAATTACTGGACATGGACACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp CGTGTCTGTCTGGGATATAATATGAACAAGACAGGCTaGTGGCTTTGGAAAATGTGCCATGTTTCTACTCAA +
Preference number: 6 (lower is better)
Translates to: RVCLGYNMNKTG*WLWKMCHVSTQ
Trigger: TTGAGTAGAAACATGGCACATTTTCCAAAGCCATCAGCCTGTCTTGTTCATATTATATCCCAGACAGACACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000433287.1
ENST00000542236.5
CDS TCA 72 bp AAAGTTCTTCCTGTTTCCGCGAATGATGAAAGTTGTTaGAGTCCCATGTGTCTTCTTTTGTTTACGACTCTG +
Preference number: 6 (lower is better)
Translates to: KVLPVSANDESC*SPMCLLLFTTL
Trigger: CAGAGTCGTAAACAAAAGAAGACACATGGGACTTCAACAACTTTCATCATTCGCGGAAACAGGAAGAACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS CCA 72 bp CCTTCAGTATTATCTGTCCTATTAAAATGCCTACTGTaGATTAGTATTGACTGTCTGCAGCAGGTATCTGCA +
Preference number: 6 (lower is better)
Translates to: PSVLSVLLKCLL*ISIDCLQQVSA
Trigger: TGCAGATACCTGCTGCAGACAGTCAATACTAATCCACAGTAGGCATTTTAATAGGACAGATAATACTGAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CAA 72 bp AGTACTGATTCCAGTTCTATATGTGTTGTTTTGTGCTaGAACTGCTTCATTGAGAAGTTGTCCCACTGCACT +
Preference number: 6 (lower is better)
Translates to: STDSSSICVVLC*NCFIEKLSHCT
Trigger: AGTGCAGTGGGACAACTTCTCAATGAAGCAGTTCAAGCACAAAACAACACATATAGAACTGGAATCAGTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS CAA 90 bp AACAAGAAACAAAAGAGTACTGATTCCAGTTCTATATGTGTTGTTTaGTGCTTGAACTGCTTCATTGAGAAGTTGTCCCACTGCACTGGT +
Preference number: 6 (lower is better)
Translates to: NKKQKSTDSSSICVV*CLNCFIEKLSHCTG
Trigger: ACCAGTGCAGTGGGACAACTTCTCAATGAAGCAGTTCAAGCACAAAACAACACATATAGAACTGGAATCAGTACTCTTTTGTTTCTTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS CAA 72 bp CAAAAGAGTACTGATTCCAGTTCTATATGTGTTGTTTaGTGCTTGAACTGCTTCATTGAGAAGTTGTCCCAC +
Preference number: 6 (lower is better)
Translates to: QKSTDSSSICVV*CLNCFIEKLSH
Trigger: GTGGGACAACTTCTCAATGAAGCAGTTCAAGCACAAAACAACACATATAGAACTGGAATCAGTACTCTTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000314218.8
ENST00000433287.1
ENST00000542236.5
CDS CAA 72 bp ACATCTGTAAGTTTTGTGAGTAGCTGTAACATGTTCTaGAAATCCATCTGGTTTGCTTACCCCTTCAGTATT +
Preference number: 6 (lower is better)
Translates to: TSVSFVSSCNMF*KSIWFAYPFSI
Trigger: AATACTGAAGGGGTAAGCAAACCAGATGGATTTCAAGAACATGTTACAGCTACTCACAAAACTTACAGATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS CAA 90 bp CAAATCATTACATCTGTAAGTTTTGTGAGTAGCTGTAACATGTTCTaGAAATCCATCTGGTTTGCTTACCCCTTCAGTATTATCTGTCCT +
Preference number: 6 (lower is better)
Translates to: QIITSVSFVSSCNMF*KSIWFAYPFSIICP
Trigger: AGGACAGATAATACTGAAGGGGTAAGCAAACCAGATGGATTTCAAGAACATGTTACAGCTACTCACAAAACTTACAGATGTAATGATTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5
CDS TCA 72 bp ATTCTGCAATTCCTTGATCACAGGATTATTAGATACTaGCACAACAGTGATATATCCTGGACAAACACAAGA +
Preference number: 6 (lower is better)
Translates to: ILQFLDHRIIRY*HNSDISWTNTR
Trigger: TCTTGTGTTTGTCCAGGATATATCACTGTTGTGTCAGTATCTAATAATCCTGTGATCAAGGAATTGCAGAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000314218.8
ENST00000542236.5