Pregenerated sensors for ATXN3L (Homo sapiens)
Ensembl gene IDs: ENSG00000123594Ensembl transcript IDs: ENST00000380622.4, ENST00000622204.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCTGTTCTGAAGCAGGAGTTACACATGATGTCTTTGGAAGATCTTaGGATGTGTTTCCGGAACTACCTTGCATGCTTAACTCAATAGTA | + |
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Preference number: 1 (lower is better) Translates to: GCSEAGVTHDVFGRS*DVFPELPCMLNSIV Trigger: TACTATTGAGTTAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATGTGTAACTCCTGCTTCAGAACAGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR GCA 90 bp | CATGATGTCTTTGGAAGATCTTGCGATGTGTTTCCGGAACTACCTTaGATGCTTAACTCAATAGTACTGCGGAGATGTTCATCTTCTCTA | + |
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Preference number: 1 (lower is better) Translates to: HDVFGRSCDVFPELP*MLNSIVLRRCSSSL Trigger: TAGAGAAGATGAACATCTCCGCAGTACTATTGAGTTAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR-3UTR TCA 90 bp | CAATTGCTCTCGAACTTGTTGTTGGCCTTTCGTGTAGGTATGAACTGTGGCCCGCTCCTCATCTTGGTCTaGTGTTCCAGACTCATCACT | + |
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Preference number: 2 (lower is better) Translates to: QLLSNLLLAFRVGMNCGPLLILV*CSRLIT Trigger: AGTGATGAGTCTGGAACATCAGACCAAGATGAGGAG...CGGGCCACAGTTCATACCTACACGAAAGGCCAACAACAAGTTCGAGAGCAATTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR-3UTR GCA 90 bp | CAATTGCTCTCGAACTTGTTGTTGGCCTTTCGTGTAGGTATGAACTGTGGCCCGGTCTTTGGAAGATCTTaGGATGTGTTTCCGGAACTA | + |
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Preference number: 2 (lower is better) Translates to: QLLSNLLLAFRVGMNCGPVFGRS*DVFPEL Trigger: TAGTTCCGGAAACACATCGCAAGATCTTCCAAAGAC...CGGGCCACAGTTCATACCTACACGAAAGGCCAACAACAAGTTCGAGAGCAATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR-3UTR GCA 90 bp | GAACTTGTTGTTGGCCTTTCGTGTAGGTATGAACTGTGGCCCGGCAGATCTGACTTTCCGGAACTACCTTaGATGCTTAACTCAATAGTA | + |
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Preference number: 2 (lower is better) Translates to: ELVVGLSCRYELWPGRSDFPELP*MLNSIV Trigger: TACTATTGAGTTAAGCATGCAAGGTAGTTCCGGAAA...GTCAGATCTGCCGGGCCACAGTTCATACCTACACGAAAGGCCAACAACAAGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR CAA 90 bp | TTATTTTCTTCGGCTGTTCTGAAGCAGGAGTTACACATGATGTCTTaGGAAGATCTTGCGATGTGTTTCCGGAACTACCTTGCATGCTTA | + |
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Preference number: 2 (lower is better) Translates to: LFSSAVLKQELHMMS*EDLAMCFRNYLACL Trigger: TAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATGTGTAACTCCTGCTTCAGAACAGCCGAAGAAAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAAATAACATAAGAATATACTTAAGCGCACAGTACATAGTTGGAGGGAGACTAAAACCGTTACTATaGTCAACACAGACAAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: RGNNIRIYLSAQYIVGGRLKPLL*STQTRD Trigger: GTCTCTTGTCTGTGTTGATCATAGTAACGGTTTTAG...TCTCCCTCCAACTATGTACTGTGCGCTTAAGTATATTCTTATGTTATTTCCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380622.4 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAAATAACATAAGAATATACTTAAGCGCACAGTACATAGTTGGAGGGAGACAAGAGACACTTCCCTaGAAGGTTAAATTGTTTCAT | + |
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Preference number: 2 (lower is better) Translates to: RGNNIRIYLSAQYIVGGRQETLP*KVKLFH Trigger: ATGAAACAATTTAACCTTTCAGGGAAGTGTCTCTTG...TCTCCCTCCAACTATGTACTGTGCGCTTAAGTATATTCTTATGTTATTTCCTCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380622.4 |
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| 3UTR-3UTR CCA 90 bp | AGAGGAAATAACATAAGAATATACTTAAGCGCACAGTACATAGTTGGAGGGAGAATGGAAAAAGTTCTATaGCAAGAGCTAATTCGTTGG | + |
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Preference number: 2 (lower is better) Translates to: RGNNIRIYLSAQYIVGGRMEKVL*QELIRW Trigger: CCAACGAATTAGCTCTTGCCATAGAACTTTTTCCAT...TCTCCCTCCAACTATGTACTGTGCGCTTAAGTATATTCTTATGTTATTTCCTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380622.4 |
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| 3UTR-3UTR GCA 90 bp | GGAAATAACATAAGAATATACTTAAGCGCACAGTACATAGTTGGAGGGAGAACTTCTCGTCATTTTGTTTaGAAACTGTCTAAAAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: GNNIRIYLSAQYIVGGRTSRHFV*KLSKSL Trigger: AAGGCTTTTAGACAGTTTGCAAACAAAATGACGAGA...AGTTCTCCCTCCAACTATGTACTGTGCGCTTAAGTATATTCTTATGTTATTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380622.4 |
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| 3UTR-3UTR GCA 90 bp | GGAAATAACATAAGAATATACTTAAGCGCACAGTACATAGTTGGAGGGAGAACTAGACACATTAGATATTaGAGGCTCAAAAATCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: GNNIRIYLSAQYIVGGRTRHIRY*RLKNQR Trigger: CCTTTGATTTTTGAGCCTGCAATATCTAATGTGTCT...AGTTCTCCCTCCAACTATGTACTGTGCGCTTAAGTATATTCTTATGTTATTTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380622.4 |
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| 3UTR-3UTR CAA 90 bp | TTTCGTGTAGGTATGAACTGTGGCCCGGCAGATCTGACTGTTGTTGCTGCTGCTTGTCTTTGGAAGATCTaGCGATGTGTTTCCGGAACT | + |
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Preference number: 3 (lower is better) Translates to: FRVGMNCGPADLTVVAAACLWKI*RCVSGT Trigger: AGTTCCGGAAACACATCGCAAGATCTTCCAAAGACA...AGCAGCAGCAACAACAGTCAGATCTGCCGGGCCACAGTTCATACCTACACGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR GCA 72 bp | GAAGCAGGAGTTACACATGATGTCTTTGGAAGATCTTaGGATGTGTTTCCGGAACTACCTTGCATGCTTAAC | + |
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Preference number: 3 (lower is better) Translates to: EAGVTHDVFGRS*DVFPELPCMLN Trigger: GTTAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATGTGTAACTCCTGCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR GCA 72 bp | TTTGGAAGATCTTGCGATGTGTTTCCGGAACTACCTTaGATGCTTAACTCAATAGTACTGCGGAGATGTTCA | + |
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Preference number: 3 (lower is better) Translates to: FGRSCDVFPELP*MLNSIVLRRCS Trigger: TGAACATCTCCGCAGTACTATTGAGTTAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| 3UTR-3UTR CAA 90 bp | GGAAATAACATAAGAATATACTTAAGCGCACAGTACATAGTTGGAGGGAGAACTGCAAGAGCTAATTCGTaGGTATACAAAAAGATCCAT | + |
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Preference number: 3 (lower is better) Translates to: GNNIRIYLSAQYIVGGRTARANS*VYKKIH Trigger: ATGGATCTTTTTGTATACCAACGAATTAGCTCTTGC...AGTTCTCCCTCCAACTATGTACTGTGCGCTTAAGTATATTCTTATGTTATTTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380622.4 |
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| CDS-3UTR TCA 90 bp | CGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGGGCCCTCGTGGCCCGGCAGATCTaGCTGTTGTTGCTGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: RRCSSSLLVSWRLSSRALVARQI*LLLLLL Trigger: AAGCAGCAGCAACAACAGTCAGATCTGCCGGGCCAC...GAGGGCCCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CCA 90 bp | CGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGGGCCCTCTCTCTATTGGTTTCTTaGCGGCTTAGTTCAAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: RRCSSSLLVSWRLSSRALSLLVS*RLSSRA Trigger: GGCCCTTGAACTAAGCCGCCAAGAAACCAATAGAGA...GAGGGCCCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CCA 90 bp | TACTGCGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGGGTGTAGGTATGAACTGTaGCCCGGCAGATCTGACTGT | + |
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Preference number: 4 (lower is better) Translates to: YCGDVHLLYWFLGGLVQGCRYEL*PGRSDC Trigger: ACAGTCAGATCTGCCGGGCCACAGTTCATACCTACA...CCCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR GCA 90 bp | CTGCGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGGGCCGTCTTTGGAAGATCTTaGGATGTGTTTCCGGAACTA | + |
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Preference number: 4 (lower is better) Translates to: LRRCSSSLLVSWRLSSRAVFGRS*DVFPEL Trigger: TAGTTCCGGAAACACATCGCAAGATCTTCCAAAGAC...GGCCCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR TCA 90 bp | ATAGTACTGCGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCATTGTTCAGACAGTGCTaGGCACACAGGAAACCTTCC | + |
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Preference number: 4 (lower is better) Translates to: IVLRRCSSSLLVSWRLSSLFRQC*AHRKPS Trigger: GGAAGGTTTCCTGTGTGCTCAGCACTGTCTGAACAA...TGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAGTACTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR TCA 90 bp | CGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGGGCCCTCTTCAAGTTAAACCACTaGATGGAGAAGAAACCGGTA | + |
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Preference number: 4 (lower is better) Translates to: RRCSSSLLVSWRLSSRALFKLNH*MEKKPV Trigger: TACCGGTTTCTTCTCCATTCAGTGGTTTAACTTGAA...GAGGGCCCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR GCA 90 bp | ACACATGATGTCTTTGGAAGATCTTGCGATGTGTTTCCGGAACTACCTTGCATGAGATCTGACTGTTGTTaGTGCTGCTTCTGTTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: THDVFGRSCDVFPELPCMRSDCC*CCFCSC Trigger: GCAGGAACAGAAGCAGCAGCAACAACAGTCAGATCT...CATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR TCA 90 bp | ATAGTACTGCGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCACTCCTCATCTTGGTCTaGTGTTCCAGACTCATCACT | + |
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Preference number: 4 (lower is better) Translates to: IVLRRCSSSLLVSWRLSSLLILV*CSRLIT Trigger: AGTGATGAGTCTGGAACATCAGACCAAGATGAGGAG...TGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAGTACTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CCA 90 bp | CTCTCGAACTTGTTGTTGGCCTTTCGTGTAGGTATGAACTGTGGCCCGGCAGATTTTTCCATTAAGTTTTaGTGTATCCATCTCTTCGAC | + |
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Preference number: 4 (lower is better) Translates to: LSNLLLAFRVGMNCGPADFSIKF*CIHLFD Trigger: GTCGAAGAGATGGATACACCAAAACTTAATGGAAAA...ATCTGCCGGGCCACAGTTCATACCTACACGAAAGGCCAACAACAAGTTCGAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR TCA 90 bp | ATAGTACTGCGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGCAGGAGTTACACATaGTGTCTTTGGAAGATCTTG | + |
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Preference number: 4 (lower is better) Translates to: IVLRRCSSSLLVSWRLSSSRSYT*CLWKIL Trigger: CAAGATCTTCCAAAGACATCATGTGTAACTCCTGCT...TGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAGTACTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CCA 90 bp | GGAAGATCTTGCGATGTGTTTCCGGAACTACCTTGCATGCTTAACTCAATAGTAGTTCATCTTCTCTATTaGTTTCTTGGCGGCTTAGTT | + |
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Preference number: 4 (lower is better) Translates to: GRSCDVFPELPCMLNSIVVHLLY*FLGGLV Trigger: AACTAAGCCGCCAAGAAACCAATAGAGAAGATGAAC...TACTATTGAGTTAAGCATGCAAGGTAGTTCCGGAAACACATCGCAAGATCTTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR GCA 90 bp | ATAGTACTGCGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCATTTCCGGAACTACCTTaGATGCTTAACTCAATAGTA | + |
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Preference number: 4 (lower is better) Translates to: IVLRRCSSSLLVSWRLSSFPELP*MLNSIV Trigger: TACTATTGAGTTAAGCATGCAAGGTAGTTCCGGAAA...TGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCGCAGTACTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CAA 90 bp | CGGAGATGTTCATCTTCTCTATTGGTTTCTTGGCGGCTTAGTTCAAGGGCCCTCCTCTCGAACTTGTTGTaGGCCTTTCGTGTAGGTATG | + |
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Preference number: 5 (lower is better) Translates to: RRCSSSLLVSWRLSSRALLSNLL*AFRVGM Trigger: CATACCTACACGAAAGGCCAACAACAAGTTCGAGAG...GAGGGCCCTTGAACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACATCTCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CAA 90 bp | TCTCAATTGCTCTCGAACTTGTTGTTGGCCTTTCGTGTAGGTATGAACTGTGGCTTGCTCTCGAACTTGTaGTTGGCCTTTCGTGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: SQLLSNLLLAFRVGMNCGLLSNL*LAFRVG Trigger: ACCTACACGAAAGGCCAACAACAAGTTCGAGAGCAA...GCCACAGTTCATACCTACACGAAAGGCCAACAACAAGTTCGAGAGCAATTGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CAA 90 bp | GCAGGAGTTACACATGATGTCTTTGGAAGATCTTGCGATGTGTTTCCGGAACTACAATTGCTCTCGAACTaGTTGTTGGCCTTTCGTGTA | + |
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Preference number: 5 (lower is better) Translates to: AGVTHDVFGRSCDVFPELQLLSN*LLAFRV Trigger: TACACGAAAGGCCAACAACAAGTTCGAGAGCAATTG...TAGTTCCGGAAACACATCGCAAGATCTTCCAAAGACATCATGTGTAACTCCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CAA 90 bp | CACTCTCAATTGCTCTCGAACTTGTTGTTGGCCTTTCGTGTAGGTATGAACTGTTGTTCATCTTCTCTATaGGTTTCTTGGCGGCTTAGT | + |
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Preference number: 5 (lower is better) Translates to: HSQLLSNLLLAFRVGMNCCSSSL*VSWRLS Trigger: ACTAAGCCGCCAAGAAACCAATAGAGAAGATGAACA...ACAGTTCATACCTACACGAAAGGCCAACAACAAGTTCGAGAGCAATTGAGAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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| CDS-3UTR CAA 90 bp | ATTTTCTTCGGCTGTTCTGAAGCAGGAGTTACACATGATGTCTTTGGAAGATCTTGTCTTTGGAAGATCTaGCGATGTGTTTCCGGAACT | + |
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Preference number: 5 (lower is better) Translates to: IFFGCSEAGVTHDVFGRSCLWKI*RCVSGT Trigger: AGTTCCGGAAACACATCGCAAGATCTTCCAAAGACA...AGATCTTCCAAAGACATCATGTGTAACTCCTGCTTCAGAACAGCCGAAGAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622204.1 |
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