RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP6V1A (Homo sapiens)

Ensembl gene IDs: ENSG00000114573

Ensembl transcript IDs: ENST00000273398.8, ENST00000461496.1, ENST00000462855.1, ENST00000470455.5, ENST00000475322.1, ENST00000496747.5

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGGGCATCAAGGACTCTCTGGCCAGTCAACAGAGGATGATTGGCTaGCAGCTTCTCAGTGACAGGTCGAACTTGACGTACAGGCCATAC +
Preference number: 1 (lower is better)
Translates to: KGIKDSLASQQRMIG*QLLSDRSNLTYRPY
Trigger: GTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAGCCAATCATCCTCTGTTGACTGGCCAGAGAGTCCTTGATGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR GCA 90 bp GACACTCCCTTCTCTTTCAGGATTTCCAAGACATTTCACCCTGCCTaGTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGG +
Preference number: 1 (lower is better)
Translates to: DTPFSFRISKTFHPA*SFIKRGQTGTKIGW
Trigger: CCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGGGTGAAATGTCTTGGAAATCCTGAAAGAGAAGGGAGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 90 bp ACACGTTTACTCCTCTGGGGATGTAGATGCTTTGGGTCTGACTGCTaGTATCCGACAAAGGTCTTTGAATACCATCAAAAATGGCTCCCA +
Preference number: 1 (lower is better)
Translates to: TRLLLWGCRCFGSDC*YPTKVFEYHQKWLP
Trigger: TGGGAGCCATTTTTGATGGTATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCCAGAGGAGTAAACGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 90 bp AGGCATATTGGAGGTATTGGCTACCAAAGCTGTCCTCTTCATAATTaGCTCTACCTTACCATCAACCTCCATTGTGAGCTCTGGGAAGTC +
Preference number: 1 (lower is better)
Translates to: RHIGGIGYQSCPLHN*LYLTINLHCELWEV
Trigger: GACTTCCCAGAGCTCACAATGGAGGTTGATGGTAAGGTAGAGTCAATTATGAAGAGGACAGCTTTGGTAGCCAATACCTCCAATATGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 90 bp AAGAAATACATACTATCAGTGACCGATCTGAAACTCTGTAACAGGTaGAGGGAGACTTACGATGAATATCTGAGCATAGGTTCGCTAGCA +
Preference number: 1 (lower is better)
Translates to: KKYILSVTDLKLCNR*RETYDEYLSIGSLA
Trigger: TGCTAGCGAACCTATGCTCAGATATTCATCGTAAGTCTCCCTTCACCTGTTACAGAGTTTCAGATCGGTCACTGATAGTATGTATTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR GCA 90 bp GATACAAAATTAATTTCATTCCTATTAGGATGGAAACTGGTATGCTaGTGTGGCCATAGATATTCTGAGAAACCTCTTAAGCCAGTGAAC +
Preference number: 1 (lower is better)
Translates to: DTKLISFLLGWKLVC*CGHRYSEKPLKPVN
Trigger: GTTCACTGGCTTAAGAGGTTTCTCAGAATATCTATGGCCACAGCAGCATACCAGTTTCCATCCTAATAGGAATGAAATTAATTTTGTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR GCA 90 bp GTAGATACAAAATTAATTTCATTCCTATTAGGATGGAAACTGGTATaGTGCTGTGGCCATAGATATTCTGAGAAACCTCTTAAGCCAGTG +
Preference number: 1 (lower is better)
Translates to: VDTKLISFLLGWKLV*CCGHRYSEKPLKPV
Trigger: CACTGGCTTAAGAGGTTTCTCAGAATATCTATGGCCACAGCAGCATACCAGTTTCCATCCTAATAGGAATGAAATTAATTTTGTATCTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR TCA 90 bp TATGCTGCTGTGGCCATAGATATTCTGAGAAACCTCTTAAGCCAGTaGACCAAAAACCATATGAAAGAAAGTAATACTTTCTATGATTGG +
Preference number: 1 (lower is better)
Translates to: YAAVAIDILRNLLSQ*TKNHMKESNTFYDW
Trigger: CCAATCATAGAAAGTATTACTTTCTTTCATATGGTTTTTGGTTCACTGGCTTAAGAGGTTTCTCAGAATATCTATGGCCACAGCAGCATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR TCA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATACCAGTCAACAGAGGATaGTTGGCTGGCAGCTTCTCA +
Preference number: 2 (lower is better)
Translates to: PACSFIKRGQTGTKIGWIPVNRG*LAGSFS
Trigger: TGAGAAGCTGCCAGCCAATCATCCTCTGTTGACTGG...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CCA 90 bp ACCAAGCTCTACAGAGAGGGGTTTACCAGTGCGAAGTACAGGATCTCCAACAGACCAACCAATTCGCTGTaGCCCACTCTCACCAGCTCA +
Preference number: 2 (lower is better)
Translates to: TKLYREGFTSAKYRISNRPTNSL*PTLTSS
Trigger: TGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGG...TCTGTTGGAGATCCTGTACTTCGCACTGGTAAACCCCTCTCTGTAGAGCTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 90 bp CAACAGAGGATGATTGGCTGGCAGCTTCTCAGTGACAGGTCGAACTaGACGTACAGGCCATACTTGCACCATGGTGAACTTCTCCTTTAC +
Preference number: 2 (lower is better)
Translates to: QQRMIGWQLLSDRSN*TYRPYLHHGELLLY
Trigger: GTAAAGGAGAAGTTCACCATGGTGCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAGCCAATCATCCTCTGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATAATACTTGCACCATGGTaGACTTCTCCTTTACACCTT +
Preference number: 2 (lower is better)
Translates to: PACSFIKRGQTGTKIGWIILAPW*TSPLHL
Trigger: AAGGTGTAAAGGAGAAGTTCACCATGGTGCAAGTAT...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAATGCTAAGCTGCCAATaGGCTTACCACAATAGAAAT +
Preference number: 2 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQMLSCQ*AYHNRN
Trigger: ATTTCTATTGTGGTAAGCTCATTGGCAGCTTAGCAT...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR TCA 90 bp GCAGGCATTTCAGCTAAACGACCAGAGATTTCTCTAAGGGCCTCAGCCCATCTAAAATGTCTCCGCCAGTaGTATGACTACCAACCCGTA +
Preference number: 2 (lower is better)
Translates to: AGISAKRPEISLRASAHLKCLRQ*YDYQPV
Trigger: TACGGGTTGGTAGTCATATCACTGGCGGAGACATTT...TAGATGGGCTGAGGCCCTTAGAGAAATCTCTGGTCGTTTAGCTGAAATGCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR GCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAACCATTCCAAATTCACTaGAAAGAGAGTACATGCAGT +
Preference number: 2 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQPFQIH*KESTCS
Trigger: ACTGCATGTACTCTCTTTGCAGTGAATTTGGAATGG...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCAAAGAGTATAGTCCCTaGCCAGGCGCGGTGGCTCAC +
Preference number: 2 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPKEYSP*PGAVAH
Trigger: GTGAGCCACCGCGCCTGGCCAGGGACTATACTCTTT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAGAGTATAGTTCCCAATaGTTTCTCACAAACATTCCT +
Preference number: 2 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQEYSSQ*FLTNIP
Trigger: AGGAATGTTTGTGAGAAACCATTGGGAACTATACTC...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CCA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATAATCATAATTCCCAGGTaGAGCAATGTAAGTTACAGT +
Preference number: 2 (lower is better)
Translates to: PACSFIKRGQTGTKIGWIIIIPR*SNVSYS
Trigger: ACTGTAACTTACATTGCTCCACCTGGGAATTATGAT...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 90 bp TCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGTAGATGCTTaGGGTCTGACTGCTGATATCCGACAAAGGTCTTTGAATACCATC +
Preference number: 2 (lower is better)
Translates to: SAKSRHVYSSGDVDA*GLTADIRQRSLNTI
Trigger: GATGGTATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 90 bp GATGTAGATGCTTTGGGTCTGACTGCTGATATCCGACAAAGGTCTTaGAATACCATCAAAAATGGCTCCCATAATGCCAGGACCAAGCTC +
Preference number: 2 (lower is better)
Translates to: DVDALGLTADIRQRS*NTIKNGSHNARTKL
Trigger: GAGCTTGGTCCTGGCATTATGGGAGCCATTTTTGATGGTATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 90 bp AGGATGTCTCCCATGTGCTCACGAATAATGGACCATGTGATTTTATaGTCACTCTGGGCAGTGGTTTCAACAGCTCTACGAGCCATATCA +
Preference number: 2 (lower is better)
Translates to: RMSPMCSRIMDHVIL*SLWAVVSTALRAIS
Trigger: TGATATGGCTCGTAGAGCTGTTGAAACCACTGCCCAGAGTGACAATAAAATCACATGGTCCATTATTCGTGAGCACATGGGAGACATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAGGCGAAGGCTGCAGTaGGCCAAGATCACGCCATTG +
Preference number: 2 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVRRRLQ*AKITPL
Trigger: CAATGGCGTGATCTTGGCTCACTGCAGCCTTCGCCT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR TCA 90 bp CTGGGCAGTGGTTTCAACAGCTCTACGAGCCATATCATAAAATGCAATCATGTTCTGCTCCTACAATGCTaGCACTCCCTTCTCTTTCAG +
Preference number: 2 (lower is better)
Translates to: LGSGFNSSTSHIIKCNHVLLLQC*HSLLFQ
Trigger: CTGAAAGAGAAGGGAGTGTCAGCATTGTAGGAGCAG...AACATGATTGCATTTTATGATATGGCTCGTAGAGCTGTTGAAACCACTGCCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR GCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCACTGCCCATCACACTTaGCACATGATTCTCAGAAGC +
Preference number: 2 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPTAHHT*HMILRS
Trigger: GCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR GCA 90 bp CTCTACGAGCCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTAGAGGGGTTTACCAGTaGGAAGTACAGGATCTCCAA +
Preference number: 2 (lower is better)
Translates to: LYEPYHKMQSCWTASLLSRGVYQ*EVQDLQ
Trigger: TTGGAGATCCTGTACTTCGCACTGGTAAACCCCTCT...AGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGGCTCGTAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CCA 90 bp CCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTTGTAGAATGGCAGTAGTTCCTCCCTaGACACACGGAAAAAGGGCA +
Preference number: 2 (lower is better)
Translates to: PYHKMQSCWTASLLSCRMAVVPP*THGKRA
Trigger: TGCCCTTTTTCCGTGTGTCCAGGGAGGAACTACTGC...CATTCTACAAGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 90 bp CTAATCTTCAAGGCTACGGAATGCATTCTGCATGTCTTCAAGAAGTaGTGCATAGTCGCTTTTGATCTTTGCCTCACCATCTTTCAGTGG +
Preference number: 2 (lower is better)
Translates to: LIFKATECILHVFKK*CIVAFDLCLTIFQW
Trigger: CCACTGAAAGATGGTGAGGCAAAGATCAAAAGCGACTATGCACAACTTCTTGAAGACATGCAGAATGCATTCCGTAGCCTTGAAGATTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp CTGGGCAGTGGTTTCAACAGCTCTACGAGCCATATCATAAAATGCAATCATGTTGTCACGGAAGTACTCTaGCAGTGTGATTCCAGTATA +
Preference number: 2 (lower is better)
Translates to: LGSGFNSSTSHIIKCNHVVTEVL*QCDSSI
Trigger: TATACTGGAATCACACTGTCAGAGTACTTCCGTGAC...AACATGATTGCATTTTATGATATGGCTCGTAGAGCTGTTGAAACCACTGCCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp CAGAATTTCCTTAGCTTTCGTCCTCAGAGGAACGAACTCTGTGAAGTGTTTGTCTCCGACAAAGGTCTTTaGATACCATCAAAAATGGCT +
Preference number: 2 (lower is better)
Translates to: QNFLSFRPQRNELCEVFVSDKGL*IPSKMA
Trigger: AGCCATTTTTGATGGTATTCAAAGACCTTTGTCGGA...GACAAACACTTCACAGAGTTCGTTCCTCTGAGGACGAAAGCTAAGGAAATTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR GCA 90 bp CCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTTGTAGAATGACATTTCACCCTGCCTaGTCGTTCATAAAACGAGGC +
Preference number: 2 (lower is better)
Translates to: PYHKMQSCWTASLLSCRMTFHPA*SFIKRG
Trigger: GCCTCGTTTTATGAACGAGCAGGCAGGGTGAAATGT...CATTCTACAAGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAAAATAAACAGGGTGTaGTGTGGATCAAGTTTTCAG +
Preference number: 2 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPKINRV*CGSSFQ
Trigger: CTGAAAACTTGATCCACATCACACCCTGTTTATTTT...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR TCA 90 bp AGAATGGGCAGAACCTGTCATAAGGAGTATATCCATTTTGTTGTAGGAAATCATAGTCAGCCATCATACTaGCATGATAGCCCATGTCAC +
Preference number: 2 (lower is better)
Translates to: RMGRTCHKEYIHFVVGNHSQPSY*HDSPCH
Trigger: GTGACATGGGCTATCATGTCAGTATGATGGCTGACT...ATGATTTCCTACAACAAAATGGATATACTCCTTATGACAGGTTCTGCCCATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CCA 90 bp AATTTCCTTAGCTTTCGTCCTCAGAGGAACGAACTCTGTGAAGTGTTTGTCATAAGTGGCAGATGTAACTaGATCAGAAAAATCACCACC +
Preference number: 2 (lower is better)
Translates to: NFLSFRPQRNELCEVFVISGRCN*IRKITT
Trigger: GGTGGTGATTTTTCTGATCCAGTTACATCTGCCACT...TATGACAAACACTTCACAGAGTTCGTTCCTCTGAGGACGAAAGCTAAGGAAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATATCTCACAAACATTCCTaGTTTATACTGGGGGAAGTG +
Preference number: 2 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKISHKHS*FILGEV
Trigger: CACTTCCCCCAGTATAAATCAGGAATGTTTGTGAGA...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR TCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCAACCTCTTAAGCCAGTaGACCAAAAACCATATGAAA +
Preference number: 2 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPNLLSQ*TKNHMK
Trigger: TTTCATATGGTTTTTGGTTCACTGGCTTAAGAGGTT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCAAACAGGGTGTGATGTaGATCAAGTTTTCAGTGATT +
Preference number: 2 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPKQGVM*IKFSVI
Trigger: AATCACTGAAAACTTGATCCACATCACACCCTGTTT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR TCA 90 bp CCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTTGTAGAATGAAGAAGCAAAGGGTTTaGGATGAGAAATTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: PYHKMQSCWTASLLSCRMKKQRV*DEKFRK
Trigger: TTTCCTGAATTTCTCATCTCAAACCCTTTGCTTCTT...CATTCTACAAGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp TTTGATAAGTTTTGCTACCTCCAGAGTGATTTTATCTGTTTCTGCCAAAGAAGCGGGAAATGCTTACGTTaGGCTAGTTTCTTATCTAAG +
Preference number: 2 (lower is better)
Translates to: FDKFCYLQSDFICFCQRSGKCLR*ASFLSK
Trigger: CTTAGATAAGAAACTAGCTCAACGTAAGCATTTCCC...GCTTCTTTGGCAGAAACAGATAAAATCACTCTGGAGGTAGCAAAACTTATCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR TCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAAAGAAGCAAAGGGTTTaGGATGAGAAATTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: HQVRISTNHCIISVNVLKKKQRV*DEKFRK
Trigger: TTTCCTGAATTTCTCATCTCAAACCCTTTGCTTCTT...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAACTAAACATCTTCTCTaGTATTTTACTGCCCATCAC +
Preference number: 2 (lower is better)
Translates to: HQVRISTNHCIISVNVLKTKHLL*YFTAHH
Trigger: GTGATGGGCAGTAAAATACCAGAGAAGATGTTTAGT...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR CCA 72 bp CCCTCCAATCGAATAATCTCTCCAACCAATTCGCTGTaGCCCACTCTCACCAGCTCATACATGGCTGCACCC +
Preference number: 3 (lower is better)
Translates to: PSNRIISPTNSL*PTLTSSYMAAP
Trigger: GGGTGCAGCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTGGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR GCA 72 bp TGCCAGGACCAAGCTCTACAGAGAGGGGTTTACCAGTaGGAAGTACAGGATCTCCAACAGACACACCAGAAG +
Preference number: 3 (lower is better)
Translates to: CQDQALQRGVYQ*EVQDLQQTHQK
Trigger: CTTCTGGTGTGTCTGTTGGAGATCCTGTACTTCGCACTGGTAAACCCCTCTCTGTAGAGCTTGGTCCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CCA 72 bp AAGGACTCTCTGGCCAGTCAACAGAGGATGATTGGCTaGCAGCTTCTCAGTGACAGGTCGAACTTGACGTAC +
Preference number: 3 (lower is better)
Translates to: KDSLASQQRMIG*QLLSDRSNLTY
Trigger: GTACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAGCCAATCATCCTCTGTTGACTGGCCAGAGAGTCCTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp CAGTCAACAGAGGATGATTGGCTGGCAGCTTCTCAGTaGCAGGTCGAACTTGACGTACAGGCCATACTTGCA +
Preference number: 3 (lower is better)
Translates to: QSTEDDWLAASQ*QVELDVQAILA
Trigger: TGCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAGCCAATCATCCTCTGTTGACTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR GCA 72 bp TCCCTTCTCTTTCAGGATTTCCAAGACATTTCACCCTaGCTGCTCGTTCATAAAACGAGGCCAGACGGGCAC +
Preference number: 3 (lower is better)
Translates to: SLLFQDFQDISP*LLVHKTRPDGH
Trigger: GTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGGGTGAAATGTCTTGGAAATCCTGAAAGAGAAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CCA 72 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTaGTCCTTAAAGGTGCAAACAGCCTTTAATTGCTAC +
Preference number: 3 (lower is better)
Translates to: MPLWPQESLQPS*SLKVQTAFNCY
Trigger: GTAGCAATTAAAGGCTGTTTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CAA 90 bp CTTCTCAGTGACAGGTCGAACTTGACGTACAGGCCATACTTGCACCATGGTGAAGGGGATGTAGATGCTTaGGGTCTGACTGCTGATATC +
Preference number: 3 (lower is better)
Translates to: LLSDRSNLTYRPYLHHGEGDVDA*GLTADI
Trigger: GATATCAGCAGTCAGACCCAAAGCATCTACATCCCC...TTCACCATGGTGCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CAA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAGTACTATTTCATATATaGTGTGAGCCCCACAAATGT +
Preference number: 3 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQVLFHI*CEPHKC
Trigger: ACATTTGTGGGGCTCACACAATATATGAAATAGTAC...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CAA 90 bp CTTCTCAGTGACAGGTCGAACTTGACGTACAGGCCATACTTGCACCATGGTGAAGGGGGTAACATGATTTaGTGTTTGATAAGCGAGTTC +
Preference number: 3 (lower is better)
Translates to: LLSDRSNLTYRPYLHHGEGGNMI*CLISEF
Trigger: GAACTCGCTTATCAAACACAAAATCATGTTACCCCC...TTCACCATGGTGCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp GTCGAACTTGACGTACAGGCCATACTTGCACCATGGTaGACTTCTCCTTTACACCTTCAAATTCAAGCTCCA +
Preference number: 3 (lower is better)
Translates to: VELDVQAILAPW*TSPLHLQIQAP
Trigger: TGGAGCTTGAATTTGAAGGTGTAAAGGAGAAGTTCACCATGGTGCAAGTATGGCCTGTACGTCAAGTTCGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp GGAGGTATTGGCTACCAAAGCTGTCCTCTTCATAATTaGCTCTACCTTACCATCAACCTCCATTGTGAGCTC +
Preference number: 3 (lower is better)
Translates to: GGIGYQSCPLHN*LYLTINLHCEL
Trigger: GAGCTCACAATGGAGGTTGATGGTAAGGTAGAGTCAATTATGAAGAGGACAGCTTTGGTAGCCAATACCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp CTCCTCTGGGGATGTAGATGCTTTGGGTCTGACTGCTaGTATCCGACAAAGGTCTTTGAATACCATCAAAAA +
Preference number: 3 (lower is better)
Translates to: LLWGCRCFGSDC*YPTKVFEYHQK
Trigger: TTTTTGATGGTATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCCAGAGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CAA 90 bp GATATCTCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGTAGATGCTTTGATCCGACAAAGGTCTTaGAATACCATCAAAAATGGC +
Preference number: 3 (lower is better)
Translates to: DISAKSRHVYSSGDVDALIRQRS*NTIKNG
Trigger: GCCATTTTTGATGGTATTCAAAGACCTTTGTCGGAT...CAAAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGAGATATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp TCTCCAACAGACACACCAGAAGTTTCTTCATACACCTaGATAGTAGCCATGTCACCCTCCAATCGAATAATC +
Preference number: 3 (lower is better)
Translates to: SPTDTPEVSSYT*IVAMSPSNRII
Trigger: GATTATTCGATTGGAGGGTGACATGGCTACTATTCAGGTGTATGAAGAAACTTCTGGTGTGTCTGTTGGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp CATACTGACATGATAGCCCATGTCACGGAAGTACTCTaGCAGTGTGATTCCAGTATAAATAGAGGCTTCTCT +
Preference number: 3 (lower is better)
Translates to: HTDMIAHVTEVL*QCDSSINRGFS
Trigger: AGAGAAGCCTCTATTTATACTGGAATCACACTGTCAGAGTACTTCCGTGACATGGGCTATCATGTCAGTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CAA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCTGCAAAGCAATTCCTTaGCAAAATGCTAAGCTGCCA +
Preference number: 3 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPCKAIP*QNAKLP
Trigger: TGGCAGCTTAGCATTTTGCAAAGGAATTGCTTTGCA...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR TCA 72 bp ATACTATCAGTGACCGATCTGAAACTCTGTAACAGGTaGAGGGAGACTTACGATGAATATCTGAGCATAGGT +
Preference number: 3 (lower is better)
Translates to: ILSVTDLKLCNR*RETYDEYLSIG
Trigger: ACCTATGCTCAGATATTCATCGTAAGTCTCCCTTCACCTGTTACAGAGTTTCAGATCGGTCACTGATAGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR-3UTR CAA 90 bp TTTGTGTTTGATAAGCGAGTTCTCACTGACAATTCCATAAATGTCTCCGCCAGTTATACACATAGGAGCTaGCTGAGGAAAAGGAAATCA +
Preference number: 3 (lower is better)
Translates to: FVFDKRVLTDNSINVSASYTHRS*LRKRKS
Trigger: TGATTTCCTTTTCCTCAGCAAGCTCCTATGTGTATA...ACTGGCGGAGACATTTATGGAATTGTCAGTGAGAACTCGCTTATCAAACACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR TCA 72 bp GAAATCCTTTTAATTTCTACCAGTCTTAGGGCCTCTTaGGTAGGCCACTTTGGAAGCAAACTGATTAAACAG +
Preference number: 3 (lower is better)
Translates to: EILLISTSLRAS*VGHFGSKLIKQ
Trigger: CTGTTTAATCAGTTTGCTTCCAAAGTGGCCTACTCAAGAGGCCCTAAGACTGGTAGAAATTAAAAGGATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR GCA 72 bp GTCTTCAAGAAGTTGTGCATAGTCGCTTTTGATCTTTaGCTCACCATCTTTCAGTGGATCCTTGAATTTCAT +
Preference number: 3 (lower is better)
Translates to: VFKKLCIVAFDL*LTIFQWILEFH
Trigger: ATGAAATTCAAGGATCCACTGAAAGATGGTGAGGCAAAGATCAAAAGCGACTATGCACAACTTCTTGAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR-3UTR CAA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATATATACACATAGGAGCTaGCTGAGGAAAAGGAAATCA +
Preference number: 3 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIYTHRS*LRKRKS
Trigger: TGATTTCCTTTTCCTCAGCAAGCTCCTATGTGTATA...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
3UTR TCA 72 bp GTGGCCATAGATATTCTGAGAAACCTCTTAAGCCAGTaGACCAAAAACCATATGAAAGAAAGTAATACTTTC +
Preference number: 3 (lower is better)
Translates to: VAIDILRNLLSQ*TKNHMKESNTF
Trigger: GAAAGTATTACTTTCTTTCATATGGTTTTTGGTTCACTGGCTTAAGAGGTTTCTCAGAATATCTATGGCCAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR GCA 72 bp AAATTAATTTCATTCCTATTAGGATGGAAACTGGTATaGTGCTGTGGCCATAGATATTCTGAGAAACCTCTT +
Preference number: 3 (lower is better)
Translates to: KLISFLLGWKLV*CCGHRYSEKPL
Trigger: AAGAGGTTTCTCAGAATATCTATGGCCACAGCAGCATACCAGTTTCCATCCTAATAGGAATGAAATTAATTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAACTGGCAGCTTCTCAGTaGCAGGTCGAACTTGACGTA +
Preference number: 4 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQLAASQ*QVELDV
Trigger: TACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAG...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AATGCCAGGACCAAGCTCTACAGAGAGGGGTTTACCAGTGCGAAGTACAGGATCCAGCTCATACATGGCTaGACCCGCCATGTCACAGGC +
Preference number: 4 (lower is better)
Translates to: NARTKLYREGFTSAKYRIQLIHG*TRHVTG
Trigger: GCCTGTGACATGGCGGGTGCAGCCATGTATGAGCTG...GATCCTGTACTTCGCACTGGTAAACCCCTCTCTGTAGAGCTTGGTCCTGGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp TCCAATCGAATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCAAGTGAAGGCAGGTCCTaGGACCCCATGCACATAACC +
Preference number: 4 (lower is better)
Translates to: SNRIISPTNSLWPTLTSSSEGRS*DPMHIT
Trigger: GGTTATGTGCATGGGGTCTCAGGACCTGCCTTCACT...TGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp AGCCATGTCACCCTCCAATCGAATAATCTCTCCAACCAATTCGCTGTGGCCCACCAGAGGATGATTGGCTaGCAGCTTCTCAGTGACAGG +
Preference number: 4 (lower is better)
Translates to: SHVTLQSNNLSNQFAVAHQRMIG*QLLSDR
Trigger: CCTGTCACTGAGAAGCTGCCAGCCAATCATCCTCTG...GTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTGGAGGGTGACATGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAATCACTACAGCCCAGCTaGTCCTTAAAGGTGCAAACA +
Preference number: 4 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQSLQPS*SLKVQT
Trigger: TGTTTGCACCTTTAAGGACCAGCTGGGCTGTAGTGA...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAGTTTCTTCATACACCTaGATAGTAGCCATGTCACCC +
Preference number: 4 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQVSSYT*IVAMSP
Trigger: GGGTGACATGGCTACTATTCAGGTGTATGAAGAAAC...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAATTTGGGTCTGACTGCTaGTATCCGACAAAGGTCTTT +
Preference number: 4 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQFGSDC*YPTKVF
Trigger: AAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAA...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TCCAATCGAATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCACTGGCAGCTTCTCAGTaGCAGGTCGAACTTGACGTA +
Preference number: 4 (lower is better)
Translates to: SNRIISPTNSLWPTLTSSLAASQ*QVELDV
Trigger: TACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAG...TGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATACAAGACATTTCACCCTaGCTGCTCGTTCATAAAACG +
Preference number: 4 (lower is better)
Translates to: PACSFIKRGQTGTKIGWIQDISP*LLVHKT
Trigger: CGTTTTATGAACGAGCAGGCAGGGTGAAATGTCTTG...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp AGTGGCAGATGTAACTGGATCAGAAAAATCACCACCAGGTGGAGAAACTGCTCCTCACCAGCTCATACATaGCTGCACCCGCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: SGRCNWIRKITTRWRNCSSPAHT*LHPPCH
Trigger: GTGACATGGCGGGTGCAGCCATGTATGAGCTGGTGA...GGAGCAGTTTCTCCACCTGGTGGTGATTTTTCTGATCCAGTTACATCTGCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATATTGCTACCTCCAGAGTaGTTTTATCTGTTTCTGCCA +
Preference number: 4 (lower is better)
Translates to: PACSFIKRGQTGTKIGWILLPPE*FYLFLP
Trigger: TGGCAGAAACAGATAAAATCACTCTGGAGGTAGCAA...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAAAGGGAGACTTACGATaGATATCTGAGCATAGGTTC +
Preference number: 4 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQKGDLR*ISEHRF
Trigger: GAACCTATGCTCAGATATTCATCGTAAGTCTCCCTT...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR CAA 72 bp ATGATTGGCTGGCAGCTTCTCAGTGACAGGTCGAACTaGACGTACAGGCCATACTTGCACCATGGTGAACTT +
Preference number: 4 (lower is better)
Translates to: MIGWQLLSDRSN*TYRPYLHHGEL
Trigger: AAGTTCACCATGGTGCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAGAAGCTGCCAGCCAATCAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp ACCAAGAGTGGCAGATGTAACTGGATCAGAAAAATCACCACCAGGTGGAGAAACAAGCCCCAGAACACCTaGACGATACCAAGAGTGGCA +
Preference number: 4 (lower is better)
Translates to: TKSGRCNWIRKITTRWRNKPQNT*TIPRVA
Trigger: TGCCACTCTTGGTATCGTTCAGGTGTTCTGGGGCTT...GTTTCTCCACCTGGTGGTGATTTTTCTGATCCAGTTACATCTGCCACTCTTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAACTTTGGAAGCAAACTaGTTAAACAGCACCATCAAG +
Preference number: 4 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQTLEAN*LNSTIK
Trigger: CTTGATGGTGCTGTTTAATCAGTTTGCTTCCAAAGT...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCCAGCTCATACATGGCTaGACCCGCCATGTCACAGGC +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPQLIHG*TRHVTG
Trigger: GCCTGTGACATGGCGGGTGCAGCCATGTATGAGCTG...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCACCAACCAATTCGCTGTaGCCCACTCTCACCAGCTCA +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPPTNSL*PTLTSS
Trigger: TGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGG...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp GCTGGATATCCACTATCTGCAGGCATTTCAGCTAAACGACCAGAGATTTCTCTACTCCATTGTGAGCTCTaGGAAGTCCCGGAGGACTTC +
Preference number: 4 (lower is better)
Translates to: AGYPLSAGISAKRPEISLLHCEL*EVPEDF
Trigger: GAAGTCCTCCGGGACTTCCCAGAGCTCACAATGGAG...TAGAGAAATCTCTGGTCGTTTAGCTGAAATGCCTGCAGATAGTGGATATCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 72 bp AGCAGACACGTTTACTCCTCTGGGGATGTAGATGCTTaGGGTCTGACTGCTGATATCCGACAAAGGTCTTTG +
Preference number: 4 (lower is better)
Translates to: SRHVYSSGDVDA*GLTADIRQRSL
Trigger: CAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATGTAACCACAGGTCCTaGGACCCCATGCACATAACC +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPCNHRS*DPMHIT
Trigger: GGTTATGTGCATGGGGTCTCAGGACCTGTGGTTACA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp GCTGGATATCCACTATCTGCAGGCATTTCAGCTAAACGACCAGAGATTTCTCTAGTGACAGGTCGAACTTaGCGTACAGGCCATACTTGC +
Preference number: 4 (lower is better)
Translates to: AGYPLSAGISAKRPEISLVTGRT*RTGHTC
Trigger: GCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCAC...TAGAGAAATCTCTGGTCGTTTAGCTGAAATGCCTGCAGATAGTGGATATCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCACCAGTCAACAGAGGATaGTTGGCTGGCAGCTTCTCA +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPPVNRG*LAGSFS
Trigger: TGAGAAGCTGCCAGCCAATCATCCTCTGTTGACTGG...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATACTTCATCGAGTATTTTaGGTAGCTTGGAAAAATCCA +
Preference number: 4 (lower is better)
Translates to: PACSFIKRGQTGTKIGWILHRVF*VAWKNP
Trigger: TGGATTTTTCCAAGCTACCCAAAATACTCGATGAAG...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATCTCCGCCAGTGATATaGCTACCAACCCGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPSPPVI*LPTRRF
Trigger: AAACCTACGGGTTGGTAGTCATATCACTGGCGGAGA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TCCAATCGAATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCAATACTTGCACCATGGTaGACTTCTCCTTTACACCTT +
Preference number: 4 (lower is better)
Translates to: SNRIISPTNSLWPTLTSSILAPW*TSPLHL
Trigger: AAGGTGTAAAGGAGAAGTTCACCATGGTGCAAGTAT...TGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CTGGGCAGTGGTTTCAACAGCTCTACGAGCCATATCATAAAATGCAATCATGTTCCAGTCAACAGAGGATaGTTGGCTGGCAGCTTCTCA +
Preference number: 4 (lower is better)
Translates to: LGSGFNSSTSHIIKCNHVPVNRG*LAGSFS
Trigger: TGAGAAGCTGCCAGCCAATCATCCTCTGTTGACTGG...AACATGATTGCATTTTATGATATGGCTCGTAGAGCTGTTGAAACCACTGCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCAAGCCCCAGAACACCTaGACGATACCAAGAGTGGCA +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPKPQNT*TIPRVA
Trigger: TGCCACTCTTGGTATCGTTCAGGTGTTCTGGGGCTT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp AATGCCAGGACCAAGCTCTACAGAGAGGGGTTTACCAGTGCGAAGTACAGGATCGAGGAACGAACTCTGTaGAGTGTTTGTCATAGTATT +
Preference number: 4 (lower is better)
Translates to: NARTKLYREGFTSAKYRIEERTL*SVCHSI
Trigger: AATACTATGACAAACACTTCACAGAGTTCGTTCCTC...GATCCTGTACTTCGCACTGGTAAACCCCTCTCTGTAGAGCTTGGTCCTGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAGGTGGGCGGATCACCTaGGGTCTGGAGTTCGAGACC +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKGGRIT*GLEFET
Trigger: GGTCTCGAACTCCAGACCTCAGGTGATCCGCCCACC...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AATTCCCAGGTGGAGCAATGTAAGTTACAGTTCCTCTGTTTCGTGGGGGTAACAACATTTCACCCTGCCTaGTCGTTCATAAAACGAGGC +
Preference number: 4 (lower is better)
Translates to: NSQVEQCKLQFLCFVGVTTFHPA*SFIKRG
Trigger: GCCTCGTTTTATGAACGAGCAGGCAGGGTGAAATGT...TGTTACCCCCACGAAACAGAGGAACTGTAACTTACATTGCTCCACCTGGGAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp AATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCATACATGGCAAGCTGTACAATTTCTaGCAGGTCTTCTTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: NNLSNQFAVAHSHQLIHGKLYNF*QVFFFL
Trigger: CAGGAAGAAGAAGACCTGGCAGAAATTGTACAGCTT...GCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp GGGGATGTAGATGCTTTGGGTCTGACTGCTGATATCCGACAAAGGTCTTTGAATACACGTTTACTCCTCTaGGGATGTAGATGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: GDVDALGLTADIRQRSLNTRLLL*GCRCFG
Trigger: CCCAAAGCATCTACATCCCCAGAGGAGTAAACGTGT...ATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp GGAAATGCTTACGTTGAGCTAGTTTCTTATCTAAGCCCCAGAACACCTGAACGAGGCACCAAGATAGGCTaGATATCCACTATCTGCAGG +
Preference number: 4 (lower is better)
Translates to: GNAYVELVSYLSPRTPERGTKIG*ISTICR
Trigger: CCTGCAGATAGTGGATATCCAGCCTATCTTGGTGCC...TCGTTCAGGTGTTCTGGGGCTTAGATAAGAAACTAGCTCAACGTAAGCATTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATGTCACTCTGGGCAGTaGTTTCAACAGCTCTACGAG +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPCHSGQ*FQQLYE
Trigger: CTCGTAGAGCTGTTGAAACCACTGCCCAGAGTGACA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR CAA 72 bp CTCAGTGACAGGTCGAACTTGACGTACAGGCCATACTaGCACCATGGTGAACTTCTCCTTTACACCTTCAAA +
Preference number: 4 (lower is better)
Translates to: LSDRSNLTYRPY*HHGELLLYTFK
Trigger: TTTGAAGGTGTAAAGGAGAAGTTCACCATGGTGCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp AATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCATACATGGCGGGAAATGCTTACGTTaGGCTAGTTTCTTATCTAAG +
Preference number: 4 (lower is better)
Translates to: NNLSNQFAVAHSHQLIHGGKCLR*ASFLSK
Trigger: CTTAGATAAGAAACTAGCTCAACGTAAGCATTTCCC...GCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp CAAAGGTCTTTGAATACCATCAAAAATGGCTCCCATAATGCCAGGACCAAGCTCAGAGGGGTTTACCAGTaGGAAGTACAGGATCTCCAA +
Preference number: 4 (lower is better)
Translates to: QRSLNTIKNGSHNARTKLRGVYQ*EVQDLQ
Trigger: TTGGAGATCCTGTACTTCGCACTGGTAAACCCCTCT...GAGCTTGGTCCTGGCATTATGGGAGCCATTTTTGATGGTATTCAAAGACCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp AAGTCCCATTTGATATCTCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGAGGATGTCTCCCATGTaGTCACGAATAATGGACCAT +
Preference number: 4 (lower is better)
Translates to: KSHLISLLRADTFTPLGMRMSPM*SRIMDH
Trigger: ATGGTCCATTATTCGTGAGCACATGGGAGACATCCT...CATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGAGATATCAAATGGGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp GCAGGCATTTCAGCTAAACGACCAGAGATTTCTCTAAGGGCCTCAGCCCATCTACTACGGAATGCATTCTaGATGTCTTCAAGAAGTTGT +
Preference number: 4 (lower is better)
Translates to: AGISAKRPEISLRASAHLLRNAF*MSSRSC
Trigger: ACAACTTCTTGAAGACATGCAGAATGCATTCCGTAG...TAGATGGGCTGAGGCCCTTAGAGAAATCTCTGGTCGTTTAGCTGAAATGCCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp GATATCTCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGTAGATGCTTTGCAGCAACAGGCATATTaGAGGTATTGGCTACCAAAG +
Preference number: 4 (lower is better)
Translates to: DISAKSRHVYSSGDVDALQQQAY*RYWLPK
Trigger: CTTTGGTAGCCAATACCTCCAATATGCCTGTTGCTG...CAAAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGAGATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 72 bp GCTTTGGGTCTGACTGCTGATATCCGACAAAGGTCTTaGAATACCATCAAAAATGGCTCCCATAATGCCAGG +
Preference number: 4 (lower is better)
Translates to: ALGLTADIRQRS*NTIKNGSHNAR
Trigger: CCTGGCATTATGGGAGCCATTTTTGATGGTATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 72 bp CCCATGTGCTCACGAATAATGGACCATGTGATTTTATaGTCACTCTGGGCAGTGGTTTCAACAGCTCTACGA +
Preference number: 4 (lower is better)
Translates to: PMCSRIMDHVIL*SLWAVVSTALR
Trigger: TCGTAGAGCTGTTGAAACCACTGCCCAGAGTGACAATAAAATCACATGGTCCATTATTCGTGAGCACATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp GGAAATGCTTACGTTGAGCTAGTTTCTTATCTAAGCCCCAGAACACCTGAACGAGTTTCTTCATACACCTaGATAGTAGCCATGTCACCC +
Preference number: 4 (lower is better)
Translates to: GNAYVELVSYLSPRTPERVSSYT*IVAMSP
Trigger: GGGTGACATGGCTACTATTCAGGTGTATGAAGAAAC...TCGTTCAGGTGTTCTGGGGCTTAGATAAGAAACTAGCTCAACGTAAGCATTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp GGAAATGCTTACGTTGAGCTAGTTTCTTATCTAAGCCCCAGAACACCTGAACGATTTGGGTCTGACTGCTaGTATCCGACAAAGGTCTTT +
Preference number: 4 (lower is better)
Translates to: GNAYVELVSYLSPRTPERFGSDC*YPTKVF
Trigger: AAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAA...TCGTTCAGGTGTTCTGGGGCTTAGATAAGAAACTAGCTCAACGTAAGCATTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAGTGACAGGTCGAACTTaGCGTACAGGCCATACTTGC +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIVTGRT*RTGHTC
Trigger: GCAAGTATGGCCTGTACGTCAAGTTCGACCTGTCAC...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAGTCACGGAAGTACTCTaGCAGTGTGATTCCAGTATA +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPVTEVL*QCDSSI
Trigger: TATACTGGAATCACACTGTCAGAGTACTTCCGTGAC...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCACAAGACATTTCACCCTaGCTGCTCGTTCATAAAACG +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPQDISP*LLVHKT
Trigger: CGTTTTATGAACGAGCAGGCAGGGTGAAATGTCTTG...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGTCACCAGCTCATACATaGCTGCACCCGCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVSPAHT*LHPPCH
Trigger: GTGACATGGCGGGTGCAGCCATGTATGAGCTGGTGA...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAGCAGTAGTTCCTCCCTaGACACACGGAAAAAGGGCA +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIAVVPP*THGKRA
Trigger: TGCCCTTTTTCCGTGTGTCCAGGGAGGAACTACTGC...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR CCA 90 bp GATATCTCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGTAGATGCTTTGAAAATCACCACCAGGTaGAGAAACTGCTCCTACAAT +
Preference number: 4 (lower is better)
Translates to: DISAKSRHVYSSGDVDALKITTR*RNCSYN
Trigger: ATTGTAGGAGCAGTTTCTCCACCTGGTGGTGATTTT...CAAAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGAGATATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp AAGAGTGGCAGATGTAACTGGATCAGAAAAATCACCACCAGGTGGAGAAACTGCAGTGGCAGATGTAACTaGATCAGAAAAATCACCACC +
Preference number: 4 (lower is better)
Translates to: KSGRCNWIRKITTRWRNCSGRCN*IRKITT
Trigger: GGTGGTGATTTTTCTGATCCAGTTACATCTGCCACT...GCAGTTTCTCCACCTGGTGGTGATTTTTCTGATCCAGTTACATCTGCCACTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAAAAGAGTATAGTCCCTaGCCAGGCGCGGTGGCTCAC +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKKEYSP*PGAVAH
Trigger: GTGAGCCACCGCGCCTGGCCAGGGACTATACTCTTT...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR CAA 72 bp CCAACCCGTAGGTTTTTGCAAGGTGTAAAGTCCCATTaGATATCTCTGCTAAGAGCAGACACGTTTACTCCT +
Preference number: 4 (lower is better)
Translates to: PTRRFLQGVKSH*ISLLRADTFTP
Trigger: AGGAGTAAACGTGTCTGCTCTTAGCAGAGATATCAAATGGGACTTTACACCTTGCAAAAACCTACGGGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
3UTR CAA 72 bp AAGGCTACGGAATGCATTCTGCATGTCTTCAAGAAGTaGTGCATAGTCGCTTTTGATCTTTGCCTCACCATC +
Preference number: 4 (lower is better)
Translates to: KATECILHVFKK*CIVAFDLCLTI
Trigger: GATGGTGAGGCAAAGATCAAAAGCGACTATGCACAACTTCTTGAAGACATGCAGAATGCATTCCGTAGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp TTTGTGTTTGATAAGCGAGTTCTCACTGACAATTCCATAAATGTCTCCGCCAGTAAATGTCTCCGCCAGTaGTATGACTACCAACCCGTA +
Preference number: 4 (lower is better)
Translates to: FVFDKRVLTDNSINVSASKCLRQ*YDYQPV
Trigger: TACGGGTTGGTAGTCATATCACTGGCGGAGACATTT...ACTGGCGGAGACATTTATGGAATTGTCAGTGAGAACTCGCTTATCAAACACAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CTCTACGAGCCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTGTCACGGAAGTACTCTaGCAGTGTGATTCCAGTATA +
Preference number: 4 (lower is better)
Translates to: LYEPYHKMQSCWTASLLSVTEVL*QCDSSI
Trigger: TATACTGGAATCACACTGTCAGAGTACTTCCGTGAC...AGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGGCTCGTAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATACTGCTCCTACAATGCTaGCACTCCCTTCTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKILLLQC*HSLLFQ
Trigger: CTGAAAGAGAAGGGAGTGTCAGCATTGTAGGAGCAG...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATACTGCTCCTACAATGCTaGCACTCCCTTCTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFILLLQC*HSLLFQ
Trigger: CTGAAAGAGAAGGGAGTGTCAGCATTGTAGGAGCAG...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR TCA 90 bp AATTCCCAGGTGGAGCAATGTAAGTTACAGTTCCTCTGTTTCGTGGGGGTAACACTTTCAGTGGATCCTTaGATTTCATGGAGGAAAGTT +
Preference number: 4 (lower is better)
Translates to: NSQVEQCKLQFLCFVGVTLSVDP*ISWRKV
Trigger: AACTTTCCTCCATGAAATTCAAGGATCCACTGAAAG...TGTTACCCCCACGAAACAGAGGAACTGTAACTTACATTGCTCCACCTGGGAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp AGTGGCAGATGTAACTGGATCAGAAAAATCACCACCAGGTGGAGAAACTGCTCCAAGAAGCAAAGGGTTTaGGATGAGAAATTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SGRCNWIRKITTRWRNCSKKQRV*DEKFRK
Trigger: TTTCCTGAATTTCTCATCTCAAACCCTTTGCTTCTT...GGAGCAGTTTCTCCACCTGGTGGTGATTTTTCTGATCCAGTTACATCTGCCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATCTCACAAACATTCCTaGTTTATACTGGGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPSHKHS*FILGEV
Trigger: CACTTCCCCCAGTATAAATCAGGAATGTTTGTGAGA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAGTCTTAGGGCCTCTTaGGTAGGCCACTTTGGAAGC +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVSLRAS*VGHFGS
Trigger: GCTTCCAAAGTGGCCTACTCAAGAGGCCCTAAGACT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATACGTACAGGCCATACTTaGACCATGGTGAACTTCTCC +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIRTGHT*TMVNFS
Trigger: GGAGAAGTTCACCATGGTGCAAGTATGGCCTGTACG...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR GCA 90 bp ACCCGTAGGTTTTTGCAAGGTGTAAAGTCCCATTTGATATCTCTGCTAAGAGCAGTCGCTTTTGATCTTTaGCTCACCATCTTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: TRRFLQGVKSHLISLLRAVAFDL*LTIFQW
Trigger: CCACTGAAAGATGGTGAGGCAAAGATCAAAAGCGAC...TGCTCTTAGCAGAGATATCAAATGGGACTTTACACCTTGCAAAAACCTACGGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATGGAAACTGGTATGCTaGTGTGGCCATAGATATTCT +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPWKLVC*CGHRYS
Trigger: AGAATATCTATGGCCACAGCAGCATACCAGTTTCCA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGCAGAGGATGATTGGCTaGCAGCTTCTCAGTGACAGG +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVQRMIG*QLLSDR
Trigger: CCTGTCACTGAGAAGCTGCCAGCCAATCATCCTCTG...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAACTCCATTGTGAGCTCTaGGAAGTCCCGGAGGACTTC +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKLHCEL*EVPEDF
Trigger: GAAGTCCTCCGGGACTTCCCAGAGCTCACAATGGAG...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCCAGCAACAGGCATATTaGAGGTATTGGCTACCAAAG +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPQQQAY*RYWLPK
Trigger: CTTTGGTAGCCAATACCTCCAATATGCCTGTTGCTG...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp GGGGATGTAGATGCTTTGGGTCTGACTGCTGATATCCGACAAAGGTCTTTGAATAAAATGCAATCATGTTaGACAGCATCCCTACTGTCT +
Preference number: 4 (lower is better)
Translates to: GDVDALGLTADIRQRSLNKMQSC*TASLLS
Trigger: AGACAGTAGGGATGCTGTCCAACATGATTGCATTTT...ATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp CCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTTGTAGAATGTGTCACTCTGGGCAGTaGTTTCAACAGCTCTACGAG +
Preference number: 4 (lower is better)
Translates to: PYHKMQSCWTASLLSCRMCHSGQ*FQQLYE
Trigger: CTCGTAGAGCTGTTGAAACCACTGCCCAGAGTGACA...CATTCTACAAGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp AATTCCCAGGTGGAGCAATGTAAGTTACAGTTCCTCTGTTTCGTGGGGGTAACAATTTTATTGTCACTCTaGGCAGTGGTTTCAACAGCT +
Preference number: 4 (lower is better)
Translates to: NSQVEQCKLQFLCFVGVTILLSL*AVVSTA
Trigger: AGCTGTTGAAACCACTGCCCAGAGTGACAATAAAAT...TGTTACCCCCACGAAACAGAGGAACTGTAACTTACATTGCTCCACCTGGGAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp GATATCTCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGTAGATGCTTTGCTCACCATCTTTCAGTaGATCCTTGAATTTCATGGA +
Preference number: 4 (lower is better)
Translates to: DISAKSRHVYSSGDVDALLTIFQ*ILEFHG
Trigger: TCCATGAAATTCAAGGATCCACTGAAAGATGGTGAG...CAAAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGAGATATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp TTTGATAAGTTTTGCTACCTCCAGAGTGATTTTATCTGTTTCTGCCAAAGAAGCTCTCCGCCAGTGATATaGCTACCAACCCGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: FDKFCYLQSDFICFCQRSSPPVI*LPTRRF
Trigger: AAACCTACGGGTTGGTAGTCATATCACTGGCGGAGA...GCTTCTTTGGCAGAAACAGATAAAATCACTCTGGAGGTAGCAAAACTTATCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAAAATGTCTCCGCCAGTaGTATGACTACCAACCCGTA +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIKCLRQ*YDYQPV
Trigger: TACGGGTTGGTAGTCATATCACTGGCGGAGACATTT...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR TCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAAGTCAGCCATCATACTaGCATGATAGCCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFISQPSY*HDSPCH
Trigger: GTGACATGGGCTATCATGTCAGTATGATGGCTGACT...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAGGGAAATGCTTACGTTaGGCTAGTTTCTTATCTAAG +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPGKCLR*ASFLSK
Trigger: CTTAGATAAGAAACTAGCTCAACGTAAGCATTTCCC...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp AATTTCCTTAGCTTTCGTCCTCAGAGGAACGAACTCTGTGAAGTGTTTGTCATAGTGCATAGTCGCTTTTaGTCTTTGCCTCACCATCTT +
Preference number: 4 (lower is better)
Translates to: NFLSFRPQRNELCEVFVIVHSRF*SLPHHL
Trigger: AAGATGGTGAGGCAAAGATCAAAAGCGACTATGCAC...TATGACAAACACTTCACAGAGTTCGTTCCTCTGAGGACGAAAGCTAAGGAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCAAGCTGTACAATTTCTaGCAGGTCTTCTTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPKLYNF*QVFFFL
Trigger: CAGGAAGAAGAAGACCTGGCAGAAATTGTACAGCTT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAACACGTTTACTCCTCTaGGGATGTAGATGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKITRLLL*GCRCFG
Trigger: CCCAAAGCATCTACATCCCCAGAGGAGTAAACGTGT...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp GGGGATGTAGATGCTTTGGGTCTGACTGCTGATATCCGACAAAGGTCTTTGAATATCATAATTCCCAGGTaGAGCAATGTAAGTTACAGT +
Preference number: 4 (lower is better)
Translates to: GDVDALGLTADIRQRSLNIIIPR*SNVSYS
Trigger: ACTGTAACTTACATTGCTCCACCTGGGAATTATGAT...ATTCAAAGACCTTTGTCGGATATCAGCAGTCAGACCCAAAGCATCTACATCCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAAACATAATGCCACTCTaGCCCCAGGAATCACTACAG +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFINIMPL*PQESLQ
Trigger: CTGTAGTGATTCCTGGGGCCAGAGTGGCATTATGTT...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
3UTR CAA 72 bp GTTACAGTTCCTCTGTTTCGTGGGGGTAACATGATTTaGTGTTTGATAAGCGAGTTCTCACTGACAATTCCA +
Preference number: 4 (lower is better)
Translates to: VTVPLFRGGNMI*CLISEFSLTIP
Trigger: TGGAATTGTCAGTGAGAACTCGCTTATCAAACACAAAATCATGTTACCCCCACGAAACAGAGGAACTGTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCTCCGACAAAGGTCTTTaGATACCATCAAAAATGGCT +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPSDKGL*IPSKMA
Trigger: AGCCATTTTTGATGGTATTCAAAGACCTTTGTCGGA...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCACACAATTTGGGTATTTaGAGATTGTTAGCCATGTTC +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPHNLGI*RLLAMF
Trigger: GAACATGGCTAACAATCTTCAAATACCCAAATTGTG...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATCAAAGTACAGTGTGTaGGATTCAACACTGGAAAAA +
Preference number: 4 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPSKYSV*DSTLEK
Trigger: TTTTTCCAGTGTTGAATCTCACACACTGTACTTTGA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAGAGGGGTTTACCAGTaGGAAGTACAGGATCTCCAA +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVRGVYQ*EVQDLQ
Trigger: TTGGAGATCCTGTACTTCGCACTGGTAAACCCCTCT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGACATTTCACCCTGCCTaGTCGTTCATAAAACGAGGC +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVTFHPA*SFIKRG
Trigger: GCCTCGTTTTATGAACGAGCAGGCAGGGTGAAATGT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAAGGATGTCTCCCATGTaGTCACGAATAATGGACCAT +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIRMSPM*SRIMDH
Trigger: ATGGTCCATTATTCGTGAGCACATGGGAGACATCCT...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR GCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAGTCGCTTTTGATCTTTaGCTCACCATCTTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIVAFDL*LTIFQW
Trigger: CCACTGAAAGATGGTGAGGCAAAGATCAAAAGCGAC...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AATTTCCTTAGCTTTCGTCCTCAGAGGAACGAACTCTGTGAAGTGTTTGTCATATTCAAGGCTACGGAATaGATTCTGCATGTCTTCAAG +
Preference number: 4 (lower is better)
Translates to: NFLSFRPQRNELCEVFVIFKATE*ILHVFK
Trigger: CTTGAAGACATGCAGAATGCATTCCGTAGCCTTGAA...TATGACAAACACTTCACAGAGTTCGTTCCTCTGAGGACGAAAGCTAAGGAAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGACTGCCCATCACACTTaGCACATGATTCTCAGAAGC +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVTAHHT*HMILRS
Trigger: GCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAGGATGGAAACTGGTATaGTGCTGTGGCCATAGATAT +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIGWKLV*CCGHRY
Trigger: ATATCTATGGCCACAGCAGCATACCAGTTTCCATCC...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAGGCACCAAGATAGGCTaGATATCCACTATCTGCAGG +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKGTKIG*ISTICR
Trigger: CCTGCAGATAGTGGATATCCAGCCTATCTTGGTGCC...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TTTGTGTTTGATAAGCGAGTTCTCACTGACAATTCCATAAATGTCTCCGCCAGTTCCGACAAAGGTCTTTaGATACCATCAAAAATGGCT +
Preference number: 4 (lower is better)
Translates to: FVFDKRVLTDNSINVSASSDKGL*IPSKMA
Trigger: AGCCATTTTTGATGGTATTCAAAGACCTTTGTCGGA...ACTGGCGGAGACATTTATGGAATTGTCAGTGAGAACTCGCTTATCAAACACAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAATACTTGCACCATGGTaGACTTCTCCTTTACACCTT +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIILAPW*TSPLHL
Trigger: AAGGTGTAAAGGAGAAGTTCACCATGGTGCAAGTAT...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TTTGTGTTTGATAAGCGAGTTCTCACTGACAATTCCATAAATGTCTCCGCCAGTTGTCCTCTTCATAATTaGCTCTACCTTACCATCAAC +
Preference number: 4 (lower is better)
Translates to: FVFDKRVLTDNSINVSASCPLHN*LYLTIN
Trigger: GTTGATGGTAAGGTAGAGTCAATTATGAAGAGGACA...ACTGGCGGAGACATTTATGGAATTGTCAGTGAGAACTCGCTTATCAAACACAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR TCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAAAACTCTGTAACAGGTaGAGGGAGACTTACGATGAA +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIKLCNR*RETYDE
Trigger: TTCATCGTAAGTCTCCCTTCACCTGTTACAGAGTTT...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCGTCTTCAAGAAGTTGTaGATAGTCGCTTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPVFKKL*IVAFDL
Trigger: AAGATCAAAAGCGACTATGCACAACTTCTTGAAGAC...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATATTCAAGGCTACGGAATaGATTCTGCATGTCTTCAAG +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIFKATE*ILHVFK
Trigger: CTTGAAGACATGCAGAATGCATTCCGTAGCCTTGAA...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR GCA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCTGCAAAGAGAGTACATaGAGTAGTCCTGTTTACAAT +
Preference number: 4 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPCKEST*SSPVYN
Trigger: ATTGTAAACAGGACTACTGCATGTACTCTCTTTGCA...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp AACGAACTCTGTGAAGTGTTTGTCATAGTATTCATCCAAGGCACGCATATACTTTACTGTCTTGTAGAATaGGCAGAACCTGTCATAAGG +
Preference number: 4 (lower is better)
Translates to: NELCEVFVIVFIQGTHILYCLVE*AEPVIR
Trigger: CCTTATGACAGGTTCTGCCCATTCTACAAGACAGTA...AAGTATATGCGTGCCTTGGATGAATACTATGACAAACACTTCACAGAGTTCGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAAAATACAAAATTAGCTaGGCATGGTGGAGCATGCCT +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIKYKIS*AWWSMP
Trigger: AGGCATGCTCCACCATGCCCAGCTAATTTTGTATTT...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATATGTCCTCTTCATAATTaGCTCTACCTTACCATCAAC +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKICPLHN*LYLTIN
Trigger: GTTGATGGTAAGGTAGAGTCAATTATGAAGAGGACA...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATACTTTCAGTGGATCCTTaGATTTCATGGAGGAAAGTT +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKILSVDP*ISWRKV
Trigger: AACTTTCCTCCATGAAATTCAAGGATCCACTGAAAG...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAGTGCATAGTCGCTTTTaGTCTTTGCCTCACCATCTT +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKVHSRF*SLPHHL
Trigger: AAGATGGTGAGGCAAAGATCAAAAGCGACTATGCAC...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATACCATTCCAAATTCACTaGAAAGAGAGTACATGCAGT +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIPFQIH*KESTCS
Trigger: ACTGCATGTACTCTCTTTGCAGTGAATTTGGAATGG...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGTCTCTGGTATTTTACTaGCCATCACACTTGCCACAT +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVSLVFY*PSHLPH
Trigger: ATGTGGCAAGTGTGATGGGCAGTAAAATACCAGAGA...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAAAATCACCACCAGGTaGAGAAACTGCTCCTACAAT +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVKITTR*RNCSYN
Trigger: ATTGTAGGAGCAGTTTCTCCACCTGGTGGTGATTTT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAGTGGCAGATGTAACTaGATCAGAAAAATCACCACC +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVSGRCN*IRKITT
Trigger: GGTGGTGATTTTTCTGATCCAGTTACATCTGCCACT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAATTTTATTGTCACTCTaGGCAGTGGTTTCAACAGCT +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIILLSL*AVVSTA
Trigger: AGCTGTTGAAACCACTGCCCAGAGTGACAATAAAAT...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGGAGGAACGAACTCTGTaGAGTGTTTGTCATAGTATT +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVEERTL*SVCHSI
Trigger: AATACTATGACAAACACTTCACAGAGTTCGTTCCTC...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAATTGCTACCTCCAGAGTaGTTTTATCTGTTTCTGCCA +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKLLPPE*FYLFLP
Trigger: TGGCAGAAACAGATAAAATCACTCTGGAGGTAGCAA...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGATGCTAAGCTGCCAATaGGCTTACCACAATAGAAAT +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVMLSCQ*AYHNRN
Trigger: ATTTCTATTGTGGTAAGCTCATTGGCAGCTTAGCAT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAAACCTCTTAAGCCAGTaGACCAAAAACCATATGAAA +
Preference number: 4 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFINLLSQ*TKNHMK
Trigger: TTTCATATGGTTTTTGGTTCACTGGCTTAAGAGGTT...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp CCATATCATAAAATGCAATCATGTTGGACAGCATCCCTACTGTCTTGTAGAATGGTCTTCAAGAAGTTGTaGATAGTCGCTTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: PYHKMQSCWTASLLSCRMVFKKL*IVAFDL
Trigger: AAGATCAAAAGCGACTATGCACAACTTCTTGAAGAC...CATTCTACAAGACAGTAGGGATGCTGTCCAACATGATTGCATTTTATGATATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR GCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGCTCTCAGAGCTGTTCTaGAATATGCAGACACATAAA +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVLSELF*NMQTHK
Trigger: TTTATGTGTCTGCATATTGCAGAACAGCTCTGAGAG...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAATCATAATTCCCAGGTaGAGCAATGTAAGTTACAGT +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIIIIPR*SNVSYS
Trigger: ACTGTAACTTACATTGCTCCACCTGGGAATTATGAT...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAATACTGTCTTGTAGAATaGGCAGAACCTGTCATAAGG +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKYCLVE*AEPVIR
Trigger: CCTTATGACAGGTTCTGCCCATTCTACAAGACAGTA...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR TCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAAAATAAACAGGGTGTaGTGTGGATCAAGTTTTCAG +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVKINRV*CGSSFQ
Trigger: CTGAAAACTTGATCCACATCACACCCTGTTTATTTT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAACTACGGAATGCATTCTaGATGTCTTCAAGAAGTTGT +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKLRNAF*MSSRSC
Trigger: ACAACTTCTTGAAGACATGCAGAATGCATTCCGTAG...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATACATCATACCATTCATTaGTATCACAATCCTAGTTTG +
Preference number: 4 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIHHTIH*YHNPSL
Trigger: CAAACTAGGATTGTGATAGCAATGAATGGTATGATG...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR GCA 90 bp AGAATGGGCAGAACCTGTCATAAGGAGTATATCCATTTTGTTGTAGGAAATCATGTATGTTCTGAGAGTTaGTATGATACATGGAGTGAA +
Preference number: 4 (lower is better)
Translates to: RMGRTCHKEYIHFVVGNHVCSES*YDTWSE
Trigger: TTCACTCCATGTATCATAGCAACTCTCAGAACATAC...ATGATTTCCTACAACAAAATGGATATACTCCTTATGACAGGTTCTGCCCATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGCTTCATCGAGTATTTTaGGTAGCTTGGAAAAATCCA +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVLHRVF*VAWKNP
Trigger: TGGATTTTTCCAAGCTACCCAAAATACTCGATGAAG...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAAAAATGCAATCATGTTaGACAGCATCCCTACTGTCT +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKKMQSC*TASLLS
Trigger: AGACAGTAGGGATGCTGTCCAACATGATTGCATTTT...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
37% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAACTCACCATCTTTCAGTaGATCCTTGAATTTCATGGA +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKLTIFQ*ILEFHG
Trigger: TCCATGAAATTCAAGGATCCACTGAAAGATGGTGAG...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGGAGTATAGTTCCCAATaGTTTCTCACAAACATTCCT +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVEYSSQ*FLTNIP
Trigger: AGGAATGTTTGTGAGAAACCATTGGGAACTATACTC...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGACTAAACATCTTCTCTaGTATTTTACTGCCCATCAC +
Preference number: 4 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVTKHLL*YFTAHH
Trigger: GTGATGGGCAGTAAAATACCAGAGAAGATGTTTAGT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAAAACAGGGTGTGATGTaGATCAAGTTTTCAGTGATT +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKKQGVM*IKFSVI
Trigger: AATCACTGAAAACTTGATCCACATCACACCCTGTTT...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CCA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAAGGAGGCAATATATATaGCCTCTTCTATTCGTTATT +
Preference number: 4 (lower is better)
Translates to: HQVRISTNHCIISVNVLKRRQYI*PLLFVI
Trigger: AATAACGAATAGAAGAGGCCATATATATTGCCTCCT...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS GCA 90 bp ATAATGTTAGTTTACCGGTCGCCGCTCACCTGCTGGGGCGCGAGGTaGAGAGACTGTACCGACCGAGGACCCAGAGGCTGTCACCACGGA +
Preference number: 5 (lower is better)
Translates to: IMLVYRSPLTCWGAR*RDCTDRGPRGCHHG
Trigger: TCCGTGGTGACAGCCTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCGGTAAACTAACATTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000475322.1
CDS CCA 90 bp GCCATGTCACCCTCCAATCGAATAATCTCTCCAACCAATTCGCTGTaGCCCACTCTCACCAGCTCATACATGGCTGCACCCGCCATGTCA +
Preference number: 5 (lower is better)
Translates to: AMSPSNRIISPTNSL*PTLTSSYMAAPAMS
Trigger: TGACATGGCGGGTGCAGCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTGGAGGGTGACATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000273398.8
ENST00000470455.5
ENST00000475322.1
ENST00000496747.5
CDS-3UTR CAA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATAAGTGACAGGTCGAACTaGACGTACAGGCCATACTTG +
Preference number: 5 (lower is better)
Translates to: PACSFIKRGQTGTKIGWISDRSN*TYRPYL
Trigger: CAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACT...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp GCTCCAGGGATAGCAGTAGTTCCTCCCTGGACACACGGAAAAAGGGCATCAAGGGACCATGTGATTTTATaGTCACTCTGGGCAGTGGTT +
Preference number: 5 (lower is better)
Translates to: APGIAVVPPWTHGKRASRDHVIL*SLWAVV
Trigger: AACCACTGCCCAGAGTGACAATAAAATCACATGGTC...CCTTGATGCCCTTTTTCCGTGTGTCCAGGGAGGAACTACTGCTATCCCTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAAGGGGGTAACATGATTTaGTGTTTGATAAGCGAGTTC +
Preference number: 5 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQGGNMI*CLISEF
Trigger: GAACTCGCTTATCAAACACAAAATCATGTTACCCCC...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CCTGCCTGCTCGTTCATAAAACGAGGCCAGACGGGCACCAAGATAGGCTGGATAAACATGATTTTGTGTTaGATAAGCGAGTTCTCACTG +
Preference number: 5 (lower is better)
Translates to: PACSFIKRGQTGTKIGWINMILC*ISEFSL
Trigger: CAGTGAGAACTCGCTTATCAAACACAAAATCATGTT...TATCCAGCCTATCTTGGTGCCCGTCTGGCCTCGTTTTATGAACGAGCAGGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp ATGCCACTCTGGCCCCAGGAATCACTACAGCCCAGCTGGTCCTTAAAGGTGCAATCACTGTTAGAATACTaGGATAGAGACTGTGATATC +
Preference number: 5 (lower is better)
Translates to: MPLWPQESLQPSWSLKVQSLLEY*DRDCDI
Trigger: GATATCACAGTCTCTATCCAAGTATTCTAACAGTGA...TTGCACCTTTAAGGACCAGCTGGGCTGTAGTGATTCCTGGGGCCAGAGTGGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp AATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCATACATGGCGGGGGTAACATGATTTaGTGTTTGATAAGCGAGTTC +
Preference number: 5 (lower is better)
Translates to: NNLSNQFAVAHSHQLIHGGGNMI*CLISEF
Trigger: GAACTCGCTTATCAAACACAAAATCATGTTACCCCC...GCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp AATGCCAGGACCAAGCTCTACAGAGAGGGGTTTACCAGTGCGAAGTACAGGATCCATGTCTTCAAGAAGTaGTGCATAGTCGCTTTTGAT +
Preference number: 5 (lower is better)
Translates to: NARTKLYREGFTSAKYRIHVFKK*CIVAFD
Trigger: ATCAAAAGCGACTATGCACAACTTCTTGAAGACATG...GATCCTGTACTTCGCACTGGTAAACCCCTCTCTGTAGAGCTTGGTCCTGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp AATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCATACATGGCTCTTCATCGAGTATTTaGGGTAGCTTGGAAAAATCC +
Preference number: 5 (lower is better)
Translates to: NNLSNQFAVAHSHQLIHGSSSSI*GSLEKS
Trigger: GGATTTTTCCAAGCTACCCAAAATACTCGATGAAGA...GCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp AATAATCTCTCCAACCAATTCGCTGTGGCCCACTCTCACCAGCTCATACATGGCATCCGACAAAGGTCTTaGAATACCATCAAAAATGGC +
Preference number: 5 (lower is better)
Translates to: NNLSNQFAVAHSHQLIHGIRQRS*NTIKNG
Trigger: GCCATTTTTGATGGTATTCAAAGACCTTTGTCGGAT...GCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAATTGGTTGGAGAGATTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp GCTGGATATCCACTATCTGCAGGCATTTCAGCTAAACGACCAGAGATTTCTCTACCAACCCGTAGGTTTTaGCAAGGTGTAAAGTCCCAT +
Preference number: 5 (lower is better)
Translates to: AGYPLSAGISAKRPEISLPTRRF*QGVKSH
Trigger: ATGGGACTTTACACCTTGCAAAAACCTACGGGTTGG...TAGAGAAATCTCTGGTCGTTTAGCTGAAATGCCTGCAGATAGTGGATATCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCACGTACAGGCCATACTaGCACCATGGTGAACTTCTC +
Preference number: 5 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPTYRPY*HHGELL
Trigger: GAGAAGTTCACCATGGTGCAAGTATGGCCTGTACGT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAGCAGCAACAGGCATATaGGAGGTATTGGCTACCAAA +
Preference number: 5 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPAATGI*EVLATK
Trigger: TTTGGTAGCCAATACCTCCAATATGCCTGTTGCTGC...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CAGAATTTCCTTAGCTTTCGTCCTCAGAGGAACGAACTCTGTGAAGTGTTTGTCGCAGCAACAGGCATATaGGAGGTATTGGCTACCAAA +
Preference number: 5 (lower is better)
Translates to: QNFLSFRPQRNELCEVFVAATGI*EVLATK
Trigger: TTTGGTAGCCAATACCTCCAATATGCCTGTTGCTGC...GACAAACACTTCACAGAGTTCGTTCCTCTGAGGACGAAAGCTAAGGAAATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATAGGGGATGTAGATGCTTaGGGTCTGACTGCTGATATC +
Preference number: 5 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIGDVDA*GLTADI
Trigger: GATATCAGCAGTCAGACCCAAAGCATCTACATCCCC...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp ACCAAGAGTGGCAGATGTAACTGGATCAGAAAAATCACCACCAGGTGGAGAAACTCTTTCAGTGGATCCTaGAATTTCATGGAGGAAAGT +
Preference number: 5 (lower is better)
Translates to: TKSGRCNWIRKITTRWRNSFSGS*NFMEES
Trigger: ACTTTCCTCCATGAAATTCAAGGATCCACTGAAAGA...GTTTCTCCACCTGGTGGTGATTTTTCTGATCCAGTTACATCTGCCACTCTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp AAGTCCCATTTGATATCTCTGCTAAGAGCAGACACGTTTACTCCTCTGGGGATGTATACACATAGGAGCTaGCTGAGGAAAAGGAAATCA +
Preference number: 5 (lower is better)
Translates to: KSHLISLLRADTFTPLGMYTHRS*LRKRKS
Trigger: TGATTTCCTTTTCCTCAGCAAGCTCCTATGTGTATA...CATCCCCAGAGGAGTAAACGTGTCTGCTCTTAGCAGAGATATCAAATGGGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS TCA 90 bp ACCTCCAGAGTGATTTTATCTGTTTCTGCCAAAGAAGCATTACTGTaGAACAAATCTCTAGAGCTTTTCCATCTTGCAAGTCCAGGCGTG +
Preference number: 5 (lower is better)
Translates to: TSRVILSVSAKEALL*NKSLELFHLASPGV
Trigger: CACGCCTGGACTTGCAAGATGGAAAAGCTCTAGAGATTTGTTTCACAGTAATGCTTCTTTGGCAGAAACAGATAAAATCACTCTGGAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000461496.1
CDS-3UTR CAA 90 bp GTATTTTACTGCCCATCACACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCATCTTCATCGAGTATTTaGGGTAGCTTGGAAAAATCC +
Preference number: 5 (lower is better)
Translates to: VFYCPSHLPHDSQKLRLPSSSSI*GSLEKS
Trigger: GGATTTTTCCAAGCTACCCAAAATACTCGATGAAGA...TGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTAAAATAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp TTTGATAAGTTTTGCTACCTCCAGAGTGATTTTATCTGTTTCTGCCAAAGAAGCACGTACAGGCCATACTaGCACCATGGTGAACTTCTC +
Preference number: 5 (lower is better)
Translates to: FDKFCYLQSDFICFCQRSTYRPY*HHGELL
Trigger: GAGAAGTTCACCATGGTGCAAGTATGGCCTGTACGT...GCTTCTTTGGCAGAAACAGATAAAATCACTCTGGAGGTAGCAAAACTTATCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGAGTGACAGGTCGAACTaGACGTACAGGCCATACTTG +
Preference number: 5 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVSDRSN*TYRPYL
Trigger: CAAGTATGGCCTGTACGTCAAGTTCGACCTGTCACT...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCATCCGACAAAGGTCTTaGAATACCATCAAAAATGGC +
Preference number: 5 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPIRQRS*NTIKNG
Trigger: GCCATTTTTGATGGTATTCAAAGACCTTTGTCGGAT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAGACCATGTGATTTTATaGTCACTCTGGGCAGTGGTT +
Preference number: 5 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIDHVIL*SLWAVV
Trigger: AACCACTGCCCAGAGTGACAATAAAATCACATGGTC...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR CAA 90 bp TCCAAGATGTTTAAGGAAAATAAACAGGGTGTGATGTGGATCAAGTTTTCAGTGTACTGCCCATCACACTaGCCACATGATTCTCAGAAG +
Preference number: 5 (lower is better)
Translates to: SKMFKENKQGVMWIKFSVYCPSH*PHDSQK
Trigger: CTTCTGAGAATCATGTGGCAAGTGTGATGGGCAGTA...CACTGAAAACTTGATCCACATCACACCCTGTTTATTTTCCTTAAACATCTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATAGGTGTAAAGTCCCATTaGATATCTCTGCTAAGAGCA +
Preference number: 5 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFIGVKSH*ISLLRA
Trigger: TGCTCTTAGCAGAGATATCAAATGGGACTTTACACC...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR CAA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAACCAACCCGTAGGTTTTaGCAAGGTGTAAAGTCCCAT +
Preference number: 5 (lower is better)
Translates to: HQVRISTNHCIISVNVLKPTRRF*QGVKSH
Trigger: ATGGGACTTTACACCTTGCAAAAACCTACGGGTTGG...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCAACATGATTTTGTGTTaGATAAGCGAGTTCTCACTG +
Preference number: 5 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPNMILC*ISEFSL
Trigger: CAGTGAGAACTCGCTTATCAAACACAAAATCATGTT...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CAATTTGGGTATTTGAAGATTGTTAGCCATGTTCACACACCCTTTCCTCTTCCCGTACTATTTCATATATaGTGTGAGCCCCACAAATGT +
Preference number: 5 (lower is better)
Translates to: QFGYLKIVSHVHTPFPLPVLFHI*CEPHKC
Trigger: ACATTTGTGGGGCTCACACAATATATGAAATAGTAC...GGGAAGAGGAAAGGGTGTGTGAACATGGCTAACAATCTTCAAATACCCAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAAGTTAATGGGAAACTGTaGCTCTCAGAGCTGTTCTGC +
Preference number: 5 (lower is better)
Translates to: HQVRISTNHCIISVNVLKVNGKL*LSELFC
Trigger: GCAGAACAGCTCTGAGAGCAACAGTTTCCCATTAAC...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp AATTTCCTTAGCTTTCGTCCTCAGAGGAACGAACTCTGTGAAGTGTTTGTCATATCACTGTTAGAATACTaGGATAGAGACTGTGATATC +
Preference number: 5 (lower is better)
Translates to: NFLSFRPQRNELCEVFVISLLEY*DRDCDI
Trigger: GATATCACAGTCTCTATCCAAGTATTCTAACAGTGA...TATGACAAACACTTCACAGAGTTCGTTCCTCTGAGGACGAAAGCTAAGGAAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000470455.5
CDS-3UTR CAA 90 bp AAAGGAAGAGGGAGGCCCTTCACAACACTAGAACAAAGGAATGTTTGTTTTATATCTTTCAGTGGATCCTaGAATTTCATGGAGGAAAGT +
Preference number: 5 (lower is better)
Translates to: KGRGRPFTTLEQRNVCFISFSGS*NFMEES
Trigger: ACTTTCCTCCATGAAATTCAAGGATCCACTGAAAGA...TATAAAACAAACATTCCTTTGTTCTAGTGTTGTGAAGGGCCTCCCTCTTCCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000273398.8
ENST00000470455.5
CDS-3UTR CAA 90 bp CACTTGCCACATGATTCTCAGAAGCTTAGGCTTCCAAGATGTTTAAGGAAAATATATACACATAGGAGCTaGCTGAGGAAAAGGAAATCA +
Preference number: 5 (lower is better)
Translates to: HLPHDSQKLRLPRCLRKIYTHRS*LRKRKS
Trigger: TGATTTCCTTTTCCTCAGCAAGCTCCTATGTGTATA...TATTTTCCTTAAACATCTTGGAAGCCTAAGCTTCTGAGAATCATGTGGCAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAATGCAAAGCAATTCCTTaGCAAAATGCTAAGCTGCCA +
Preference number: 5 (lower is better)
Translates to: HQVRISTNHCIISVNVLKCKAIP*QNAKLP
Trigger: TGGCAGCTTAGCATTTTGCAAAGGAATTGCTTTGCA...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAACATGTCTTCAAGAAGTaGTGCATAGTCGCTTTTGAT +
Preference number: 5 (lower is better)
Translates to: HQVRISTNHCIISVNVLKHVFKK*CIVAFD
Trigger: ATCAAAAGCGACTATGCACAACTTCTTGAAGACATG...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS-3UTR CAA 90 bp CATCAAGTCCGTATCTCAACAAACCATTGCATAATTTCTGTCAATGTTCTCAAATATCACAATCCTAGTTaGCTGGTAGGTTTAAGAAAG +
Preference number: 5 (lower is better)
Translates to: HQVRISTNHCIISVNVLKYHNPS*LVGLRK
Trigger: CTTTCTTAAACCTACCAGCAAACTAGGATTGTGATA...TTTGAGAACATTGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000273398.8
CDS GCA 72 bp GTTTACCGGTCGCCGCTCACCTGCTGGGGCGCGAGGTaGAGAGACTGTACCGACCGAGGACCCAGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: VYRSPLTCWGAR*RDCTDRGPRGC
Trigger: ACAGCCTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCGGTAAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000475322.1
CDS GCA 72 bp TTCGCTGTGGCCCACTCTCACCAGCTCATACATGGCTaGACCCGCCATGTCACAGGCTGTAACCACAGGTCC +
Preference number: 6 (lower is better)
Translates to: FAVAHSHQLIHG*TRHVTGCNHRS
Trigger: GGACCTGTGGTTACAGCCTGTGACATGGCGGGTGCAGCCATGTATGAGCTGGTGAGAGTGGGCCACAGCGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000273398.8
ENST00000475322.1
ENST00000496747.5
CDS GCA 72 bp TCATCGAGTATTTTGGGTAGCTGCTGGGGCGCGAGGTaGAGAGACTGTACCGACCGAGGACCCAGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: SSSILGSCWGAR*RDCTDRGPRGC
Trigger: ACAGCCTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGCTACCCAAAATACTCGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000496747.5
CDS CCA 72 bp TCCATAATGTTAGTTTACCGGTCGCCGCTCACCTGCTaGGGCGCGAGGTGCAGAGACTGTACCGACCGAGGA +
Preference number: 6 (lower is better)
Translates to: SIMLVYRSPLTC*GARCRDCTDRG
Trigger: TCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCGGTAAACTAACATTATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000475322.1
CDS GCA 72 bp AAATCCATAATGTTAGTTTACCGGTCGCCGCTCACCTaGTGGGGCGCGAGGTGCAGAGACTGTACCGACCGA +
Preference number: 6 (lower is better)
Translates to: KSIMLVYRSPLT*WGARCRDCTDR
Trigger: TCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCGGTAAACTAACATTATGGATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000475322.1
CDS CAA 72 bp GTGCTTTCTTTATCTTCATCGAGTATTTTGGGTAGCTaGGAAAAATCCATAATGTTAGTTTACCGGTCGCCG +
Preference number: 6 (lower is better)
Translates to: VLSLSSSSILGS*EKSIMLVYRSP
Trigger: CGGCGACCGGTAAACTAACATTATGGATTTTTCCAAGCTACCCAAAATACTCGATGAAGATAAAGAAAGCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000475322.1
CDS CAA 72 bp GTGCTTTCTTTATCTTCATCGAGTATTTTGGGTAGCTaGGAAAAATCCATAATGTTAGTTTACCTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: VLSLSSSSILGS*EKSIMLVYLLG
Trigger: CCCCAGCAGGTAAACTAACATTATGGATTTTTCCAAGCTACCCAAAATACTCGATGAAGATAAAGAAAGCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000273398.8
ENST00000462855.1
ENST00000470455.5