RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP2B2-IT2 (Homo sapiens)

Ensembl gene IDs: ENSG00000224771

Ensembl transcript IDs: ENST00000419591.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGAAATATGCGGTACTGCACAGACTGCAGAAGGCACCCCTGCTTATaGGACGAGCTTGAAGCAGGAAGGCAGAGCGTCACCTGGCTCGAC +
Preference number: 5 (lower is better)
Translates to: GNMRYCTDCRRHPCL*DELEAGRQSVTWLD
Trigger: GTCGAGCCAGGTGACGCTCTGCCTTCCTGCTTCAAGCTCGTCCCATAAGCAGGGGTGCCTTCTGCAGTCTGTGCAGTACCGCATATTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS CCA 90 bp TGTGAATGTCTCTCTTGGTGTGATCCTCACAAGCAGGGGGAAATGTaGGCTCATAGATCTGCTGCTGCCAGGGTCCTGGGGGATCTGCAG +
Preference number: 5 (lower is better)
Translates to: CECLSWCDPHKQGEM*AHRSAAARVLGDLQ
Trigger: CTGCAGATCCCCCAGGACCCTGGCAGCAGCAGATCTATGAGCCCACATTTCCCCCTGCTTGTGAGGATCACACCAAGAGAGACATTCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS TCA 90 bp GGGTTGGGGACTCCGGCCTTTTTCCACTTTGCCATCTCTTCTTTGTaGGGCCAGGATGTGAATGTCTCTCTTGGTGTGATCCTCACAAGC +
Preference number: 5 (lower is better)
Translates to: GLGTPAFFHFAISSL*GQDVNVSLGVILTS
Trigger: GCTTGTGAGGATCACACCAAGAGAGACATTCACATCCTGGCCTCACAAAGAAGAGATGGCAAAGTGGAAAAAGGCCGGAGTCCCCAACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS CCA 90 bp CTTTGCCATCTCTTCTTTGTGAGGCCAGGATGTGAATGTCTCTCTTaGTGTGATCCTCACAAGCAGGGGGAAATGTGGGCTCATAGATCT +
Preference number: 5 (lower is better)
Translates to: LCHLFFVRPGCECLS*CDPHKQGEMWAHRS
Trigger: AGATCTATGAGCCCACATTTCCCCCTGCTTGTGAGGATCACACCAAGAGAGACATTCACATCCTGGCCTCACAAAGAAGAGATGGCAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS TCA 90 bp GCTCATTTGAATAAAGATTTTCAGTACTTTTTAGTACAGGTGTTCTaGTCTCCAGGTGTGGAGGGAGGGAAAGAAACAACTGGAGTTTGG +
Preference number: 5 (lower is better)
Translates to: AHLNKDFQYFLVQVF*SPGVEGGKETTGVW
Trigger: CCAAACTCCAGTTGTTTCTTTCCCTCCCTCCACACCTGGAGATCAGAACACCTGTACTAAAAAGTACTGAAAATCTTTATTCAAATGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS TCA 72 bp AGACTGCAGAAGGCACCCCTGCTTATGGGACGAGCTTaGAGCAGGAAGGCAGAGCGTCACCTGGCTCGACCT +
Preference number: 6 (lower is better)
Translates to: RLQKAPLLMGRA*SRKAERHLARP
Trigger: AGGTCGAGCCAGGTGACGCTCTGCCTTCCTGCTTCAAGCTCGTCCCATAAGCAGGGGTGCCTTCTGCAGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS CCA 72 bp CGGTACTGCACAGACTGCAGAAGGCACCCCTGCTTATaGGACGAGCTTGAAGCAGGAAGGCAGAGCGTCACC +
Preference number: 6 (lower is better)
Translates to: RYCTDCRRHPCL*DELEAGRQSVT
Trigger: GGTGACGCTCTGCCTTCCTGCTTCAAGCTCGTCCCATAAGCAGGGGTGCCTTCTGCAGTCTGTGCAGTACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS CCA 72 bp CTCTCTTGGTGTGATCCTCACAAGCAGGGGGAAATGTaGGCTCATAGATCTGCTGCTGCCAGGGTCCTGGGG +
Preference number: 6 (lower is better)
Translates to: LSWCDPHKQGEM*AHRSAAARVLG
Trigger: CCCCAGGACCCTGGCAGCAGCAGATCTATGAGCCCACATTTCCCCCTGCTTGTGAGGATCACACCAAGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS TCA 72 bp TCTAGTCCAACCTCCCCACAGCAGAGATGGGTACACTaGGTCCCAGAAGAGAGAGGCATTGCCCAAGCACAC +
Preference number: 6 (lower is better)
Translates to: SSPTSPQQRWVH*VPEERGIAQAH
Trigger: GTGTGCTTGGGCAATGCCTCTCTCTTCTGGGACTCAGTGTACCCATCTCTGCTGTGGGGAGGTTGGACTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS GCA 72 bp CAACAGAAAGCACACAGATGGGGAAATATGCGGTACTaGACAGACTGCAGAAGGCACCCCTGCTTATGGGAC +
Preference number: 6 (lower is better)
Translates to: QQKAHRWGNMRY*TDCRRHPCLWD
Trigger: GTCCCATAAGCAGGGGTGCCTTCTGCAGTCTGTGCAGTACCGCATATTTCCCCATCTGTGTGCTTTCTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS CAA 90 bp GTTCTGATCTCCAGGTGTGGAGGGAGGGAAAGAAACAACTGGAGTTaGGGAAACTCTCATCTAGTCCAACCTCCCCACAGCAGAGATGGG +
Preference number: 6 (lower is better)
Translates to: VLISRCGGRERNNWS*GNSHLVQPPHSRDG
Trigger: CCCATCTCTGCTGTGGGGAGGTTGGACTAGATGAGAGTTTCCCAAACTCCAGTTGTTTCTTTCCCTCCCTCCACACCTGGAGATCAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS CCA 72 bp CTCTTCTTTGTGAGGCCAGGATGTGAATGTCTCTCTTaGTGTGATCCTCACAAGCAGGGGGAAATGTGGGCT +
Preference number: 6 (lower is better)
Translates to: LFFVRPGCECLS*CDPHKQGEMWA
Trigger: AGCCCACATTTCCCCCTGCTTGTGAGGATCACACCAAGAGAGACATTCACATCCTGGCCTCACAAAGAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS TCA 72 bp ACTCCGGCCTTTTTCCACTTTGCCATCTCTTCTTTGTaGGGCCAGGATGTGAATGTCTCTCTTGGTGTGATC +
Preference number: 6 (lower is better)
Translates to: TPAFFHFAISSL*GQDVNVSLGVI
Trigger: GATCACACCAAGAGAGACATTCACATCCTGGCCTCACAAAGAAGAGATGGCAAAGTGGAAAAAGGCCGGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000419591.2
CDS TCA 72 bp AATAAAGATTTTCAGTACTTTTTAGTACAGGTGTTCTaGTCTCCAGGTGTGGAGGGAGGGAAAGAAACAACT +
Preference number: 6 (lower is better)
Translates to: NKDFQYFLVQVF*SPGVEGGKETT
Trigger: AGTTGTTTCTTTCCCTCCCTCCACACCTGGAGATCAGAACACCTGTACTAAAAAGTACTGAAAATCTTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000419591.2