Pregenerated sensors for ATF1 (Homo sapiens)
Ensembl gene IDs: ENSG00000123268Ensembl transcript IDs: ENST00000262053.8, ENST00000549612.5, ENST00000551831.5, ENST00000552487.1, ENST00000552510.5
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCCGACCACCTGATTGCTaGGCACAAGTATCTGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSRPPDC*AQVSAV Trigger: GACAGCAGATACTTGTGCCCAGCAATCAGGTGGTCG...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCGTTTGTACGACCACCTaGTTGCTGGGCACAAGTATC | + |
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Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSVCTTT*LLGTSI Trigger: GATACTTGTGCCCAGCAATCAGGTGGTCGTACAAAC...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCTGGCAGAGAAGTAGCTaGAGGTGTAGTTCGGATCTG | + |
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Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSWQRSS*RCSSDL Trigger: CAGATCCGAACTACACCTTCAGCTACTTCTCTGCCA...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR GCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCCTGGGCACAAGTATCTaGTGTCCATCAGAGGTCTGT | + |
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Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSLGTSI*CPSEVC Trigger: ACAGACCTCTGATGGACAGCAGATACTTGTGCCCAG...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR GCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCGTACGACCACCTGATTaGTGGGCACAAGTATCTGCT | + |
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Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSVRPPD*WAQVSA Trigger: AGCAGATACTTGTGCCCAGCAATCAGGTGGTCGTAC...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCTGTTTGCATATCTCCTaGTGCAGTTTGTACGACCAC | + |
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Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSCLHIS*CSLYDH Trigger: GTGGTCGTACAAACTGCATCAGGAGATATGCAAACA...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCGAAAATTTAGACTGCTaGAAGTTCATTTCTTGCTCC | + |
|
Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSENLDC*KFISCS Trigger: GGAGCAAGAAATGAACTTTCAGCAGTCTAAATTTTC...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCATTTCTCTTTTCAATTaGGGGTCATCTGTCTTAGTT | + |
|
Preference number: 2 (lower is better) Translates to: TKLPVVPVASLRSFSTFSISLFN*GSSVLV Trigger: AACTAAGACAGATGACCCCCAATTGAAAAGAGAAAT...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR TCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGGTGTAGTTCGGATCTaGTATGTTTGCATATCTCCT | + |
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Preference number: 2 (lower is better) Translates to: LSPLSLDIVRKIFILDLEGVVRI*YVCISP Trigger: AGGAGATATGCAAACATATCAGATCCGAACTACACC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR GCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAATCCATCAGAGGTCTGTaGATACTGAAGAATAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: LSPLSLDIVRKIFILDLESIRGL*ILKNSC Trigger: ACAACTATTCTTCAGTATGCACAGACCTCTGATGGA...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR CAA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCTATTTCTCTTTTCAATaGGGGGTCATCTGTCTTAGT | + |
|
Preference number: 3 (lower is better) Translates to: TKLPVVPVASLRSFSTFSYFSFQ*GVICLS Trigger: ACTAAGACAGATGACCCCCAATTGAAAAGAGAAATA...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGTGCCCGTAGCTTCCTaGAGGTCATTTTCCACTTTC | + |
|
Preference number: 3 (lower is better) Translates to: LSPLSLDIVRKIFILDLEVPVAS*RSFSTF Trigger: GAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCAC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR GCA 90 bp | GCTAGGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGATAATCAACTGTGGCTaGCGCCTCGCCGCTCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: ARIPWAFCEEPMLSDESWIINCG*RLAALR Trigger: CCGGAGAGCGGCGAGGCGGCAGCCACAGTTGATTAT...CCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCTAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR CCA 90 bp | AGGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACGTGGTCCCTGCTACTTaGGGAGCTGAGGCAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: RIPWAFCEEPMLSDESWDVVPAT*GAEAGG Trigger: TCCTCCTGCCTCAGCTCCCCAAGTAGCAGGGACCAC...GTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR TCA 90 bp | GGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACTGCCTATGCTGTCGGATaGGTCCTGGGACTCCTCACT | + |
|
Preference number: 4 (lower is better) Translates to: GSRGLSVRSLCCRMSPGTAYAVG*VLGLLT Trigger: AGTGAGGAGTCCCAGGACTCATCCGACAGCATAGGC...AGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR GCA 90 bp | AGGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACTCTGTGAGGAGCCTATaGTGTCGGATGAGTCCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RIPWAFCEEPMLSDESWDSVRSL*CRMSPG Trigger: CCCAGGACTCATCCGACAGCATAGGCTCCTCACAGA...GTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR CCA 90 bp | GGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACTTTCCATAATCAACTGTaGCTGCCGCCTCGCCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: GSRGLSVRSLCCRMSPGTFHNQL*LPPRRS Trigger: AGAGCGGCGAGGCGGCAGCCACAGTTGATTATGGAA...AGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR CCA 90 bp | ATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACTCCAGTCAGGGCCGCTACTaGCGGCATGATCTACACAAG | + |
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Preference number: 4 (lower is better) Translates to: IPWAFCEEPMLSDESWDSSQGRY*RHDLHK Trigger: CTTGTGTAGATCATGCCGCCAGTAGCGGCCCTGACT...GGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR TCA 90 bp | GGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACTTTGAGGTGCTGTCTCTaGCGTGGTACTCTTGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: GSRGLSVRSLCCRMSPGTLRCCL*RGTLVG Trigger: TCCCACAAGAGTACCACGTCAGAGACAGCACCTCAA...AGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR TCA 90 bp | GCTAGGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGTCTGGGTGACAGAGTaGGACCCTGTTGAGCAATAT | + |
|
Preference number: 4 (lower is better) Translates to: ARIPWAFCEEPMLSDESWVWVTE*DPVEQY Trigger: ATATTGCTCAACAGGGTCTCACTCTGTCACCCAGAC...CCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR TCA 90 bp | AGGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACAGGTCAAGGCTGCAGTaGGCTATGTTCACACTACTG | + |
|
Preference number: 4 (lower is better) Translates to: RIPWAFCEEPMLSDESWDRSRLQ*AMFTLL Trigger: CAGTAGTGTGAACATAGCTCACTGCAGCCTTGACCT...GTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR GCA 90 bp | GCTAGGATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGACAGGAGGTCAAGGCTaGAGTGAGCTATGTTCACAC | + |
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Preference number: 4 (lower is better) Translates to: ARIPWAFCEEPMLSDESWTGGQG*SELCSH Trigger: GTGTGAACATAGCTCACTGCAGCCTTGACCTCCTGT...CCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR GCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCTCTGTGAGGAGCCTATaGTGTCGGATGAGTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: TKLPVVPVASLRSFSTFSSVRSL*CRMSPG Trigger: CCCAGGACTCATCCGACAGCATAGGCTCCTCACAGA...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| CDS-3UTR TCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCTTGAGGTGCTGTCTCTaGCGTGGTACTCTTGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: TKLPVVPVASLRSFSTFSLRCCL*RGTLVG Trigger: TCCCACAAGAGTACCACGTCAGAGACAGCACCTCAA...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGAGGAGACGCACGACTaGAAGGGCGCAGCGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEEETHD*KGAAQL Trigger: GAGCTGCGCTGCGCCCTTCCAGTCGTGCGTCTCCTC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS-3UTR GCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAATAATCAACTGTGGCTaGCGCCTCGCCGCTCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEIINCG*RLAALR Trigger: CCGGAGAGCGGCGAGGCGGCAGCCACAGTTGATTAT...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| CDS-3UTR TCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGCCTATGCTGTCGGATaGGTCCTGGGACTCCTCACT | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEAYAVG*VLGLLT Trigger: AGTGAGGAGTCCCAGGACTCATCCGACAGCATAGGC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| CDS-3UTR TCA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCGGTGTAGTTCGGATCTaGTATGTTTGCATATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: TKLPVVPVASLRSFSTFSGVVRI*YVCISP Trigger: AGGAGATATGCAAACATATCAGATCCGAACTACACC...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAATTCCATAATCAACTGTaGCTGCCGCCTCGCCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEFHNQL*LPPRRS Trigger: AGAGCGGCGAGGCGGCAGCCACAGTTGATTATGGAA...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| 3UTR CAA 72 bp | ATTTCTACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTaGAGGTCATTTTCCACTTTCTCCTCTGTCACTAGA | + |
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Preference number: 4 (lower is better) Translates to: ISTKLPVVPVAS*RSFSTFSSVTR Trigger: TCTAGTGACAGAGGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGTAGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGTTTGTACGACCACCTaGTTGCTGGGCACAAGTATC | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEVCTTT*LLGTSI Trigger: GATACTTGTGCCCAGCAATCAGGTGGTCGTACAAAC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAATGGCAGAGAAGTAGCTaGAGGTGTAGTTCGGATCTG | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEWQRSS*RCSSDL Trigger: CAGATCCGAACTACACCTTCAGCTACTTCTCTGCCA...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR GCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGTACGACCACCTGATTaGTGGGCACAAGTATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEVRPPD*WAQVSA Trigger: AGCAGATACTTGTGCCCAGCAATCAGGTGGTCGTAC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAACCTCGTCTTTTTATTTaGGGGCGAGGGAAAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEPRLFI*GRGKGG Trigger: TCCTCCTTTCCCTCGCCCCCAAATAAAAAGACGAGG...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAATGTTTGCATATCTCCTaGTGCAGTTTGTACGACCAC | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLECLHIS*CSLYDH Trigger: GTGGTCGTACAAACTGCATCAGGAGATATGCAAACA...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAACTCCATTTGGGGCAATaGCAACTGTTGAGCAATATG | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLELHLGQ*QLLSNM Trigger: CATATTGCTCAACAGTTGCCATTGCCCCAAATGGAG...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAACTGATAGATGGGAGTTaGAACAGACATAGAAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLELIDGS*NRHRSD Trigger: GTCACTTCTATGTCTGTTCCAACTCCCATCTATCAG...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| CDS-3UTR TCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAGAAAATTTAGACTGCTaGAAGTTCATTTCTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEENLDC*KFISCS Trigger: GGAGCAAGAAATGAACTTTCAGCAGTCTAAATTTTC...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| CDS-3UTR CCA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAATTTCTCTTTTCAATTaGGGGTCATCTGTCTTAGTT | + |
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Preference number: 4 (lower is better) Translates to: LSPLSLDIVRKIFILDLEISLFN*GSSVLV Trigger: AACTAAGACAGATGACCCCCAATTGAAAAGAGAAAT...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS TCA 90 bp | ACCTCCCACGGAGAGCTAGCGCCTGCGACTGCAAAGGGCGGCTTCTaGGGCGAAAGCCACCCCGCGGCGGGCGGTTTCGGGCTTTACTTT | + |
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Preference number: 5 (lower is better) Translates to: TSHGELAPATAKGGF*GESHPAAGGFGLYF Trigger: AAAGTAAAGCCCGAAACCGCCCGCCGCGGGGTGGCTTTCGCCTCAGAAGCCGCCCTTTGCAGTCGCAGGCGCTAGCTCTCCGTGGGAGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552487.1 |
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| CDS-3UTR CAA 90 bp | ATCCCGTGGGCTTTCTGTGAGGAGCCTATGCTGTCGGATGAGTCCTGGGACTCCCAGAGTGAGACCCTGTaGAGCAATATGAGAAATGTG | + |
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Preference number: 5 (lower is better) Translates to: IPWAFCEEPMLSDESWDSQSETL*SNMRNV Trigger: CACATTTCTCATATTGCTCAACAGGGTCTCACTCTG...GGAGTCCCAGGACTCATCCGACAGCATAGGCTCCTCACAGAAAGCCCACGGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549612.5 |
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| CDS-3UTR CAA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCCATCTGTGCCTGGACTaGCCAACTGTAAGGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: TKLPVVPVASLRSFSTFSHLCLD*PTVRLH Trigger: ATGGAGCCTTACAGTTGGCAAGTCCAGGCACAGATG...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR CAA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCACCTCGTCTTTTTATTaGGGGGCGAGGGAAAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: TKLPVVPVASLRSFSTFSTSSFY*GARERR Trigger: CCTCCTTTCCCTCGCCCCCAAATAAAAAGACGAGGT...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS-3UTR CAA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCACTGTAAGGCTCCATTaGGGGCAATGGCAACTGTTG | + |
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Preference number: 5 (lower is better) Translates to: TKLPVVPVASLRSFSTFSTVRLH*GQWQLL Trigger: CAACAGTTGCCATTGCCCCAAATGGAGCCTTACAGT...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS-3UTR CAA 90 bp | ACAAAGCTTCCAGTTGTGCCCGTAGCTTCCTTGAGGTCATTTTCCACTTTCTCCGGGCAATGGCAACTGTaGAGCAATATGAGAAATGTG | + |
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Preference number: 5 (lower is better) Translates to: TKLPVVPVASLRSFSTFSGQWQL*SNMRNV Trigger: CACATTTCTCATATTGCTCAACAGTTGCCATTGCCC...GGAGAAAGTGGAAAATGACCTCAAGGAAGCTACGGGCACAACTGGAAGCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS-3UTR CAA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAACATCTGTGCCTGGACTaGCCAACTGTAAGGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: LSPLSLDIVRKIFILDLEHLCLD*PTVRLH Trigger: ATGGAGCCTTACAGTTGGCAAGTCCAGGCACAGATG...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS-3UTR CAA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAAACTGTAAGGCTCCATTaGGGGCAATGGCAATGTACT | + |
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Preference number: 5 (lower is better) Translates to: LSPLSLDIVRKIFILDLETVRLH*GQWQCT Trigger: AGTACATTGCCATTGCCCCAAATGGAGCCTTACAGT...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000262053.8 |
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| CDS-3UTR CAA 90 bp | CTTTCTCCTCTGTCACTAGATATCGTGCGTAAGATATTTATCCTTGATTTGGAATATTTCTCTTTTCAATaGGGGGTCATCTGTCTTAGT | + |
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Preference number: 5 (lower is better) Translates to: LSPLSLDIVRKIFILDLEYFSFQ*GVICLS Trigger: ACTAAGACAGATGACCCCCAATTGAAAAGAGAAATA...TTCCAAATCAAGGATAAATATCTTACGCACGATATCTAGTGACAGAGGAGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000262053.8 ENST00000551831.5 |
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| CDS TCA 72 bp | GGAGAGCTAGCGCCTGCGACTGCAAAGGGCGGCTTCTaGGGCGAAAGCCACCCCGCGGCGGGCGGTTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: GELAPATAKGGF*GESHPAAGGFG Trigger: CCCGAAACCGCCCGCCGCGGGGTGGCTTTCGCCTCAGAAGCCGCCCTTTGCAGTCGCAGGCGCTAGCTCTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552487.1 |
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| CDS GCA 72 bp | ACTCGAGACCTCCCACGGAGAGCTAGCGCCTGCGACTaGAAAGGGCGGCTTCTGAGGCGAAAGCCACCCCGC | + |
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Preference number: 6 (lower is better) Translates to: TRDLPRRASACD*KGRLLRRKPPR Trigger: GCGGGGTGGCTTTCGCCTCAGAAGCCGCCCTTTGCAGTCGCAGGCGCTAGCTCTCCGTGGGAGGTCTCGAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552487.1 |
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| CDS CCA 72 bp | TTATTTGGGGGCGAGGGAAAGGAGGAGACGCACGACTaGAAGGGCGCAGCGCAGCTCTGCACCGAGGCGCGG | + |
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Preference number: 6 (lower is better) Translates to: LFGGEGKEETHD*KGAAQLCTEAR Trigger: CCGCGCCTCGGTGCAGAGCTGCGCTGCGCCCTTCCAGTCGTGCGTCTCCTCCTTTCCCTCGCCCCCAAATAA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000551831.5 |
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| CDS CCA 72 bp | AATGTACTGTCCGCTGCTAGTCTGATAGATGGGAGTTaGAACAGACATAGAAGTGACAGCAGCAGAAACTCC | + |
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Preference number: 6 (lower is better) Translates to: NVLSAASLIDGS*NRHRSDSSRNS Trigger: GGAGTTTCTGCTGCTGTCACTTCTATGTCTGTTCCAACTCCCATCTATCAGACTAGCAGCGGACAGTACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000262053.8 ENST00000552487.1 ENST00000552510.5 |
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