Pregenerated sensors for ASIP (Homo sapiens)
Ensembl gene IDs: ENSG00000101440Ensembl transcript IDs: ENST00000374954.3, ENST00000374954.4, ENST00000568305.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TATTGTATTTCGATTTTAGCCCAAGCCAGGTCTCCCTaGAGTCCCATCTCCTGGAACCTCCGCCCGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: YCISILAQARSP*SPISWNLRPPA Trigger: TGCAGGCGGGCGGAGGTTCCAGGAGATGGGACTTCAGGGAGACCTGGCTTGGGCTAAAATCGAAATACAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000374954.3 |
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| CDS GCA 90 bp | GGCCTCTCTCTATACAGGGCCCTGTTCCAGGAAATCGTCAGTGGCTaGTCTCTGTGGTCAATAATAGATAATTCCAGATCAAAAGAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GLSLYRALFQEIVSG*SLWSIIDNSRSKEV Trigger: CACTTCTTTTGATCTGGAATTATCTATTATTGACCACAGAGAGCAGCCACTGACGATTTCCTGGAACAGGGCCCTGTATAGAGAGAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568305.5 |
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| CDS GCA 72 bp | GCACTGGCAGGAGGCGCACGGGTCGCAGCAGGCGGGTaGCGGCGGCTTGCAGCTGTTGCGGGTGGCCACGCA | + |
|
Preference number: 6 (lower is better) Translates to: ALAGGARVAAGG*RRLAAVAGGHA Trigger: TGCGTGGCCACCCGCAACAGCTGCAAGCCGCCGGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000374954.4 ENST00000568305.5 |
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| CDS CAA 72 bp | GAGGCGCACGGGTCGCAGCAGGCGGGTGCCGGCGGCTaGCAGCTGTTGCGGGTGGCCACGCAGGGCGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: EAHGSQQAGAGG*QLLRVATQGAD Trigger: ATCTGCGCCCTGCGTGGCCACCCGCAACAGCTGCAAGCCGCCGGCACCCGCCTGCTGCGACCCGTGCGCCTC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000374954.4 ENST00000568305.5 |
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| CDS GCA 72 bp | AGGCGCACGGGTCGCAGCAGGCGGGTGCCGGCGGCTTaGAGCTGTTGCGGGTGGCCACGCAGGGCGCAGATA | + |
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Preference number: 6 (lower is better) Translates to: RRTGRSRRVPAA*SCCGWPRRAQI Trigger: TATCTGCGCCCTGCGTGGCCACCCGCAACAGCTGCAAGCCGCCGGCACCCGCCTGCTGCGACCCGTGCGCCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000374954.4 ENST00000568305.5 |
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| CDS TCA 72 bp | AGAGGAAGACCAGCAGGGTGGCCAGGAGTAAGCGGGTaGCATCCATCCCAGGAGGCATGCTTTCCCGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: RGRPAGWPGVSG*HPSQEACFPAK Trigger: CTTTGCGGGAAAGCATGCCTCCTGGGATGGATGTCACCCGCTTACTCCTGGCCACCCTGCTGGTCTTCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374954.4 |
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| CDS TCA 72 bp | AGAGGAAGACCAGCAGGGTGGCCAGGAGTAAGCGGGTaGCATCCATCCCAGGAGGCCTCTCTCTATACAGGG | + |
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Preference number: 6 (lower is better) Translates to: RGRPAGWPGVSG*HPSQEASLYTG Trigger: CCCTGTATAGAGAGAGGCCTCCTGGGATGGATGTCACCCGCTTACTCCTGGCCACCCTGCTGGTCTTCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568305.5 |
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| CDS CAA 90 bp | GCCACAATAGAGACAGAAGGGACATCCAGTAGGTTCACAGAGGAGTaGCTTCTCAGGCTCCTGTCATCTCGGAGCTTCTCCTCAGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: ATIETEGTSSRFTEE*LLRLLSSRSFSSGG Trigger: GCCACCTGAGGAGAAGCTCCGAGATGACAGGAGCCTGAGAAGCAACTCCTCTGTGAACCTACTGGATGTCCCTTCTGTCTCTATTGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000374954.4 ENST00000568305.5 |
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| CDS CAA 72 bp | GAGACAGAAGGGACATCCAGTAGGTTCACAGAGGAGTaGCTTCTCAGGCTCCTGTCATCTCGGAGCTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: ETEGTSSRFTEE*LLRLLSSRSFS Trigger: GGAGAAGCTCCGAGATGACAGGAGCCTGAGAAGCAACTCCTCTGTGAACCTACTGGATGTCCCTTCTGTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000374954.4 ENST00000568305.5 |
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| CDS GCA 72 bp | CTATACAGGGCCCTGTTCCAGGAAATCGTCAGTGGCTaGTCTCTGTGGTCAATAATAGATAATTCCAGATCA | + |
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Preference number: 6 (lower is better) Translates to: LYRALFQEIVSG*SLWSIIDNSRS Trigger: TGATCTGGAATTATCTATTATTGACCACAGAGAGCAGCCACTGACGATTTCCTGGAACAGGGCCCTGTATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568305.5 |
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| CDS CCA 72 bp | GCCCTGTTCCAGGAAATCGTCAGTGGCTGCTCTCTGTaGTCAATAATAGATAATTCCAGATCAAAAGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: ALFQEIVSGCSL*SIIDNSRSKEV Trigger: CACTTCTTTTGATCTGGAATTATCTATTATTGACCACAGAGAGCAGCCACTGACGATTTCCTGGAACAGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568305.5 |
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