Pregenerated sensors for ARPC1A (Homo sapiens)

Ensembl gene IDs: ENSG00000241685

Ensembl transcript IDs: ENST00000471960.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GCTGCCCTGAGGCCCCACCACCTCAGATTGCAACAAGGTCTGCACTaGTCCTGCTGGCTGCTGCCTTGTAATCTGCACGTGATGCTATTC	+
Preference number: 5 (lower is better) Translates to: AALRPHHLRLQQGLH*SCWLLPCNLHVMLF Trigger: GAATAGCATCACGTGCAGATTACAAGGCAGCAGCCAGCAGGAGCAGTGCAGACCTTGTTGCAATCTGAGGTGGTGGGGCCTCAGGGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471960.5
CDS CCA 90 bp	TTCCAACAGGCTGTAACTTCGCTTTCTGTTATGTGTGCACTACTGTaGGAACGCAGCATTCAGGAATGTCTCCTTTTGTTCTCGAGTAGC	+
Preference number: 5 (lower is better) Translates to: FQQAVTSLSVMCALL*ERSIQECLLLFSSS Trigger: GCTACTCGAGAACAAAAGGAGACATTCCTGAATGCTGCGTTCCCACAGTAGTGCACACATAACAGAAAGCGAAGTTACAGCCTGTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471960.5
CDS GCA 90 bp	CAGTTACCTTTTCCAACAGGCTGTAACTTCGCTTTCTGTTATGTGTaGACTACTGTGGGAACGCAGCATTCAGGAATGTCTCCTTTTGTT	+
Preference number: 5 (lower is better) Translates to: QLPFPTGCNFAFCYV*TTVGTQHSGMSPFV Trigger: AACAAAAGGAGACATTCCTGAATGCTGCGTTCCCACAGTAGTGCACACATAACAGAAAGCGAAGTTACAGCCTGTTGGAAAAGGTAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000471960.5
CDS TCA 72 bp	GTAGCTGAGAAAGGGTACCCTAGGAAGCAGCTGCCCTaGGGCCCCACCACCTCAGATTGCAACAAGGTCTGC	+
Preference number: 6 (lower is better) Translates to: VAEKGYPRKQLP*GPTTSDCNKVC Trigger: GCAGACCTTGTTGCAATCTGAGGTGGTGGGGCCTCAGGGCAGCTGCTTCCTAGGGTACCCTTTCTCAGCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471960.5
CDS GCA 72 bp	AGGCCCCACCACCTCAGATTGCAACAAGGTCTGCACTaGTCCTGCTGGCTGCTGCCTTGTAATCTGCACGTG	+
Preference number: 6 (lower is better) Translates to: RPHHLRLQQGLH*SCWLLPCNLHV Trigger: CACGTGCAGATTACAAGGCAGCAGCCAGCAGGAGCAGTGCAGACCTTGTTGCAATCTGAGGTGGTGGGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471960.5
CDS GCA 72 bp	TTTCCAACAGGCTGTAACTTCGCTTTCTGTTATGTGTaGACTACTGTGGGAACGCAGCATTCAGGAATGTCT	+
Preference number: 6 (lower is better) Translates to: FPTGCNFAFCYV*TTVGTQHSGMS Trigger: AGACATTCCTGAATGCTGCGTTCCCACAGTAGTGCACACATAACAGAAAGCGAAGTTACAGCCTGTTGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000471960.5
CDS CCA 72 bp	GCTGTAACTTCGCTTTCTGTTATGTGTGCACTACTGTaGGAACGCAGCATTCAGGAATGTCTCCTTTTGTTC	+
Preference number: 6 (lower is better) Translates to: AVTSLSVMCALL*ERSIQECLLLF Trigger: GAACAAAAGGAGACATTCCTGAATGCTGCGTTCCCACAGTAGTGCACACATAACAGAAAGCGAAGTTACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000471960.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu