Pregenerated sensors for ARL4A (Homo sapiens)
Ensembl gene IDs: ENSG00000122644Ensembl transcript IDs: ENST00000396663.2, ENST00000439721.1, ENST00000651779.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAACATATGAAGGCTCCACATCAAGCTACTTCATTCATTTTGTGTaGCACAAGAATCAAGGTTCCAAAAACTGTTATGCCACTGAAAAA | + |
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Preference number: 1 (lower is better) Translates to: LTYEGSTSSYFIHFV*HKNQGSKNCYATEK Trigger: TTTTTCAGTGGCATAACAGTTTTTGGAACCTTGATTCTTGTGTCACACAAAATGAATGAAGTAGCTTGATGTGGAGCCTTCATATGTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR TCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGCCATCGATTAGCACTTaGTCGTTACAAAGCCTTGTA | + |
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Preference number: 2 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQPSIST*SLQSLV Trigger: TACAAGGCTTTGTAACGATCAAGTGCTAATCGATGG...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR TCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACACCATCGATTAGCACTTaGTCGTTACAAAGCCTTGTA | + |
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Preference number: 2 (lower is better) Translates to: FLSAILLPFLPLYNQDWTPSIST*SLQSLV Trigger: TACAAGGCTTTGTAACGATCAAGTGCTAATCGATGG...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR GCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGACCTGTGTAGAACGATaGATAGCTATTTCTAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQTCVER*IAISKK Trigger: CTTTTTAGAAATAGCTATGCATCGTTCTACACAGGT...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR GCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACATTACAAAGCCTTGTATaGAATTTTCTTGCAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: FLSAILLPFLPLYNQDWTLQSLV*NFLAKA Trigger: AGCCTTTGCAAGAAAATTGCATACAAGGCTTTGTAA...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR GCA 90 bp | CAGCGCATCAGGTATATTTATAAAGCTTTTGCTCTTCTCAACACACTACAAAAATTACAAAGCCTTGTATaGAATTTTCTTGCAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: QRIRYIYKAFALLNTLQKLQSLV*NFLAKA Trigger: AGCCTTTGCAAGAAAATTGCATACAAGGCTTTGTAA...TTTTTGTAGTGTGTTGAGAAGAGCAAAAGCTTTATAAATATACCTGATGCGCTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR GCA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACACCTGTGTAGAACGATaGATAGCTATTTCTAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: TMNESIILGSSSESASDNTCVER*IAISKK Trigger: CTTTTTAGAAATAGCTATGCATCGTTCTACACAGGT...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR CAA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGGATCGTTACAAAGCCTaGTATGCAATTTTCTTGCAA | + |
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Preference number: 3 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQDRYKA*YAIFLQ Trigger: TTGCAAGAAAATTGCATACAAGGCTTTGTAACGATC...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR CAA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACGATCGTTACAAAGCCTaGTATGCAATTTTCTTGCAA | + |
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Preference number: 3 (lower is better) Translates to: TMNESIILGSSSESASDNDRYKA*YAIFLQ Trigger: TTGCAAGAAAATTGCATACAAGGCTTTGTAACGATC...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| 3UTR-3UTR CAA 90 bp | CAGCGCATCAGGTATATTTATAAAGCTTTTGCTCTTCTCAACACACTACAAAAAACACCAAAACATGCTTaGTCAGGAAAACTAATCCAT | + |
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Preference number: 3 (lower is better) Translates to: QRIRYIYKAFALLNTLQKTPKHA*SGKLIH Trigger: ATGGATTAGTTTTCCTGACAAAGCATGTTTTGGTGT...TTTTTGTAGTGTGTTGAGAAGAGCAAAAGCTTTATAAATATACCTGATGCGCTG 36% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR TCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGCCAGCGCGGCGGAGCTaGGCTCTCTCTCGGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQPARRS*ALSRST Trigger: GGTGGACCGAGAGAGAGCTCAGCTCCGCCGCGCTGG...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR GCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACATCGGCCCGGCGCACCTaGAGCGCAGCCAGGGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: FLSAILLPFLPLYNQDWTSARRT*SAARAS Trigger: TGACGCCCTGGCTGCGCTGCAGGTGCGCCGGGCCGA...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR GCA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACGCATCAGGGAAGCCATaGAACTCCCGCCCCCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TMNESIILGSSSESASDNASGKP*NSRPRS Trigger: GGAGCGGGGGCGGGAGTTGCATGGCTTCCCTGATGC...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR TCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGCTCCCGGTCCACTCATaGTCCCAAATCCCATTGGTC | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQLPVHS*SQIPLV Trigger: GACCAATGGGATTTGGGATCATGAGTGGACCGGGAG...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR GCA 90 bp | CAGCGCATCAGGTATATTTATAAAGCTTTTGCTCTTCTCAACACACTACAAAAAATTGGTGAGGGTAACTaGCGCTCCCAGCGCGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: QRIRYIYKAFALLNTLQKIGEGN*RSQRGG Trigger: TCCGCCGCGCTGGGAGCGGCAGTTACCCTCACCAAT...TTTTTGTAGTGTGTTGAGAAGAGCAAAAGCTTTATAAATATACCTGATGCGCTG 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR GCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAAGCAGCTCTGGCAGTTaGCGCACGAGAAACCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: FLSAILLPFLPLYNQDWTSSSGS*RTRNLG Trigger: TCCAAGGTTTCTCGTGCGGCAACTGCCAGAGCTGCT...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR CCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACACTCTCCAAGCAGCTCTaGCAGTTGCCGCACGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: FLSAILLPFLPLYNQDWTLSKQL*QLPHEK Trigger: TTTCTCGTGCGGCAACTGCCAGAGCTGCTTGGAGAG...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR CCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGATCCCAAATCCCATTaGTCACCCGCATCAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: FLSAILLPFLPLYNQDWTDPKSH*SPASGK Trigger: CTTCCCTGATGCGGGTGACCAATGGGATTTGGGATC...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR CCA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACCCGCACGAGAAACCTTaGACTCAGACTCCGACCACG | + |
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Preference number: 4 (lower is better) Translates to: TMNESIILGSSSESASDNPHEKP*TQTPTT Trigger: CGTGGTCGGAGTCTGAGTCCAAGGTTTCTCGTGCGG...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR GCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGAAAAACAGCCTTCAATaGCTGTCACATCTAAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQKNSLQ*LSHLSR Trigger: TCTGCTTAGATGTGACAGGCATTGAAGGCTGTTTTT...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR GCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGGGATCTACTCATGTTTaGAGCAGATACCATGATTTC | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQGSTHV*SRYHDF Trigger: GAAATCATGGTATCTGCTGCAAACATGAGTAGATCC...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR TCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGTTCATTCATTTTGTGTaGCACAAGAATCAAGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQFIHFV*HKNQGS Trigger: GGAACCTTGATTCTTGTGTCACACAAAATGAATGAA...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR TCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGGGAATATTTAACATATaGAGGCTCCACATCAAGCTA | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQGIFNI*RLHIKL Trigger: TAGCTTGATGTGGAGCCTTCATATGTTAAATATTCC...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR TCA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGTATAAACATTCTAAGTaGCCATCACTAGTGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQYKHSK*PSLVQE Trigger: TTCCTGCACTAGTGATGGTCACTTAGAATGTTTATA...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR TCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGGAATATTTAACATATaGAGGCTCCACATCAAGCTA | + |
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Preference number: 4 (lower is better) Translates to: FLSAILLPFLPLYNQDWTGIFNI*RLHIKL Trigger: TAGCTTGATGTGGAGCCTTCATATGTTAAATATTCC...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR GCA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAACCTGTGTAGAACGATaGATAGCTATTTCTAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: FLSAILLPFLPLYNQDWTTCVER*IAISKK Trigger: CTTTTTAGAAATAGCTATGCATCGTTCTACACAGGT...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR GCA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACGGATCTACTCATGTTTaGAGCAGATACCATGATTTC | + |
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Preference number: 4 (lower is better) Translates to: TMNESIILGSSSESASDNGSTHV*SRYHDF Trigger: GAAATCATGGTATCTGCTGCAAACATGAGTAGATCC...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR TCA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACTATAAACATTCTAAGTaGCCATCACTAGTGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: TMNESIILGSSSESASDNYKHSK*PSLVQE Trigger: TTCCTGCACTAGTGATGGTCACTTAGAATGTTTATA...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR GCA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACTTACAAAGCCTTGTATaGAATTTTCTTGCAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: TMNESIILGSSSESASDNLQSLV*NFLAKA Trigger: AGCCTTTGCAAGAAAATTGCATACAAGGCTTTGTAA...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS GCA 90 bp | GCTGCAGGTGAAGGGGAGCCTCGGGCGGTCAGGTCGCCGCCAGGCTaGCGGCTCCGTTCGGCCCGGCGCACCTGCAGCGCAGCCAGGGCG | + |
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Preference number: 5 (lower is better) Translates to: AAGEGEPRAVRSPPG*RLRSARRTCSAARA Trigger: CGCCCTGGCTGCGCTGCAGGTGCGCCGGGCCGAACGGAGCCGGCAGCCTGGCGGCGACCTGACCGCCCGAGGCTCCCCTTCACCTGCAGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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| CDS GCA 90 bp | GTCAGGTCGCCGCCAGGCTGCCGGCTCCGTTCGGCCCGGCGCACCTaGAGCGCAGCCAGGGCGTCAAGCCAAGGCTCTCACATCCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: VRSPPGCRLRSARRT*SAARASSQGSHIRG Trigger: GCCCCGGATGTGAGAGCCTTGGCTTGACGCCCTGGCTGCGCTGCAGGTGCGCCGGGCCGAACGGAGCCGGCAGCCTGGCGGCGACCTGAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439721.1 |
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| CDS GCA 90 bp | CCAGGGCGTCAAGCCAAGGCTCTCACATCCGGGGCCCGCAGTCACTaGCAACGCGTTAACCCTTTGTCCGCGGGCCCGAGGGTGCCGGCT | + |
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Preference number: 5 (lower is better) Translates to: PGRQAKALTSGARSH*QRVNPLSAGPRVPA Trigger: AGCCGGCACCCTCGGGCCCGCGGACAAAGGGTTAACGCGTTGGCAGTGACTGCGGGCCCCGGATGTGAGAGCCTTGGCTTGACGCCCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439721.1 |
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| CDS GCA 90 bp | AAGCCATGCAACTCCCGCCCCCGCTCCCTAATTGGTGAGGGTAACTaGCGCTCCCAGCGCGGCGGAGCTGAGCTCTCTCTCGGTCCACCG | + |
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Preference number: 5 (lower is better) Translates to: KPCNSRPRSLIGEGN*RSQRGGAELSLGPP Trigger: CGGTGGACCGAGAGAGAGCTCAGCTCCGCCGCGCTGGGAGCGGCAGTTACCCTCACCAATTAGGGAGCGGGGGCGGGAGTTGCATGGCTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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| CDS GCA 90 bp | ACTCATGATCCCAAATCCCATTGGTCACCCGCATCAGGGAAGCCATaGAACTCCCGCCCCCGCTCCCTAATTGGTGAGGGTAACTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: THDPKSHWSPASGKP*NSRPRSLIGEGNCR Trigger: GCGGCAGTTACCCTCACCAATTAGGGAGCGGGGGCGGGAGTTGCATGGCTTCCCTGATGCGGGTGACCAATGGGATTTGGGATCATGAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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| CDS-3UTR CAA 90 bp | TCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAGGCCGCACGAGAAACCTaGGACTCAGACTCCGACCAC | + |
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Preference number: 5 (lower is better) Translates to: SYLPYCYHFFLSIIRTGQAARET*DSDSDH Trigger: GTGGTCGGAGTCTGAGTCCAAGGTTTCTCGTGCGGC...CTGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR CAA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAAAGCAGCTCTGGCAGTaGCCGCACGAGAAACCTTGG | + |
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Preference number: 5 (lower is better) Translates to: FLSAILLPFLPLYNQDWTKQLWQ*PHEKPW Trigger: CCAAGGTTTCTCGTGCGGCAACTGCCAGAGCTGCTT...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000396663.2 |
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| CDS-3UTR CAA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACAACACCAAAACATGCTTaGTCAGGAAAACTAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: FLSAILLPFLPLYNQDWTTPKHA*SGKLIH Trigger: ATGGATTAGTTTTCCTGACAAAGCATGTTTTGGTGT...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR CAA 90 bp | TTCTTATCTGCCATACTGTTACCATTTCTTCCTCTCTATAATCAGGACTGGACACAAAGTGCATTTCTTTaGGTGATTTTTCAGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: FLSAILLPFLPLYNQDWTQSAFL*VIFQNS Trigger: GCTGTTCTGAAAAATCACCAAAAGAAATGCACTTTG...TGTCCAGTCCTGATTATAGAGAGGAAGAAATGGTAACAGTATGGCAGATAAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR CAA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACACACCAAAACATGCTTaGTCAGGAAAACTAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: TMNESIILGSSSESASDNTPKHA*SGKLIH Trigger: ATGGATTAGTTTTCCTGACAAAGCATGTTTTGGTGT...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS-3UTR CAA 90 bp | ACTATGAATGAGTCAATCATTTTAGGTTCTTCAAGTGAAAGTGCTTCTGACAACCAAAGTGCATTTCTTTaGGTGATTTTTCAGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: TMNESIILGSSSESASDNQSAFL*VIFQNS Trigger: GCTGTTCTGAAAAATCACCAAAAGAAATGCACTTTG...GTTGTCAGAAGCACTTTCACTTGAAGAACCTAAAATGATTGACTCATTCATAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000651779.1 |
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| CDS GCA 72 bp | GAAGGGGAGCCTCGGGCGGTCAGGTCGCCGCCAGGCTaGCGGCTCCGTTCGGCCCGGCGCACCTGCAGCGCA | + |
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Preference number: 6 (lower is better) Translates to: EGEPRAVRSPPG*RLRSARRTCSA Trigger: TGCGCTGCAGGTGCGCCGGGCCGAACGGAGCCGGCAGCCTGGCGGCGACCTGACCGCCCGAGGCTCCCCTTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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| CDS GCA 72 bp | CCGCCAGGCTGCCGGCTCCGTTCGGCCCGGCGCACCTaGAGCGCAGCCAGGGCGTCAAGCCAAGGCTCTCAC | + |
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Preference number: 6 (lower is better) Translates to: PPGCRLRSARRT*SAARASSQGSH Trigger: GTGAGAGCCTTGGCTTGACGCCCTGGCTGCGCTGCAGGTGCGCCGGGCCGAACGGAGCCGGCAGCCTGGCGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439721.1 |
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| CDS CAA 90 bp | GCTCTCACATCCGGGGCCCGCAGTCACTGCCAACGCGTTAACCCTTaGTCCGCGGGCCCGAGGGTGCCGGCTGTTGCCGCGCGGGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: ALTSGARSHCQRVNP*SAGPRVPAVAARAP Trigger: AGGGGCCCGCGCGGCAACAGCCGGCACCCTCGGGCCCGCGGACAAAGGGTTAACGCGTTGGCAGTGACTGCGGGCCCCGGATGTGAGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439721.1 |
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| CDS CAA 72 bp | TCCGGGGCCCGCAGTCACTGCCAACGCGTTAACCCTTaGTCCGCGGGCCCGAGGGTGCCGGCTGTTGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: SGARSHCQRVNP*SAGPRVPAVAA Trigger: CGCGGCAACAGCCGGCACCCTCGGGCCCGCGGACAAAGGGTTAACGCGTTGGCAGTGACTGCGGGCCCCGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439721.1 |
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| CDS GCA 72 bp | AACTCCCGCCCCCGCTCCCTAATTGGTGAGGGTAACTaGCGCTCCCAGCGCGGCGGAGCTGAGCTCTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: NSRPRSLIGEGN*RSQRGGAELSL Trigger: GAGAGAGAGCTCAGCTCCGCCGCGCTGGGAGCGGCAGTTACCCTCACCAATTAGGGAGCGGGGGCGGGAGTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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| CDS GCA 72 bp | CAAGCCAAGGCTCTCACATCCGGGGCCCGCAGTCACTaGCAACGCGTTAACCCTTTGTCCGCGGGCCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: QAKALTSGARSH*QRVNPLSAGPR Trigger: CCTCGGGCCCGCGGACAAAGGGTTAACGCGTTGGCAGTGACTGCGGGCCCCGGATGTGAGAGCCTTGGCTTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439721.1 |
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| CDS GCA 72 bp | CCCAAATCCCATTGGTCACCCGCATCAGGGAAGCCATaGAACTCCCGCCCCCGCTCCCTAATTGGTGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: PKSHWSPASGKP*NSRPRSLIGEG Trigger: ACCCTCACCAATTAGGGAGCGGGGGCGGGAGTTGCATGGCTTCCCTGATGCGGGTGACCAATGGGATTTGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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| CDS GCA 72 bp | CCCTTCCAGCTTAGCTCTCCAAGCAGCTCTGGCAGTTaGCGCACGAGAAACCTTGGACTCAGACTCCGACCA | + |
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Preference number: 6 (lower is better) Translates to: PFQLSSPSSSGS*RTRNLGLRLRP Trigger: TGGTCGGAGTCTGAGTCCAAGGTTTCTCGTGCGGCAACTGCCAGAGCTGCTTGGAGAGCTAAGCTGGAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000396663.2 ENST00000439721.1 |
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