Pregenerated sensors for ARL17A (Homo sapiens)
Ensembl gene IDs: ENSG00000185829Ensembl transcript IDs: ENST00000336125.6, ENST00000628873.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTGTTCACTGCACAAGGGCACTTGGCCAAGGGAGTGAGTGGGACTaGAAATCCTGCCCCTGCTCCATGCTGAGCCACATACAAAGTCCC | + |
|
Preference number: 1 (lower is better) Translates to: FVHCTRALGQGSEWD*KSCPCSMLSHIQSP Trigger: GGGACTTTGTATGTGGCTCAGCATGGAGCAGGGGCAGGATTTTCAGTCCCACTCACTCCCTTGGCCAAGTGCCCTTGTGCAGTGAACAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR TCA 90 bp | TTGGTGACCAGTCCCCAAATAAGGAGCCCACCAAGAGTCACCTCATaGGAACAAAGGACGCTTCTATCACCCAGAAAATTCCAAGGGATT | + |
|
Preference number: 1 (lower is better) Translates to: LVTSPQIRSPPRVTS*EQRTLLSPRKFQGI Trigger: AATCCCTTGGAATTTTCTGGGTGATAGAAGCGTCCTTTGTTCTCATGAGGTGACTCTTGGTGGGCTCCTTATTTGGGGACTGGTCACCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTAGGTGCACCACTCTCCTaGAACATGGATGTGTTCGCC | + |
|
Preference number: 2 (lower is better) Translates to: GGGILEPIPRKIARMTELGAPLS*NMDVFA Trigger: GGCGAACACATCCATGTTCCAGGAGAGTGGTGCACC...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAACCCCACGCCAGAGGATaGGGAATGGGGCTGACAGCA | + |
|
Preference number: 2 (lower is better) Translates to: IRGGLRTLPSFFSEETAQPHARG*GMGLTA Trigger: TGCTGTCAGCCCCATTCCCCATCCTCTGGCGTGGGG...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTAACACAGGGTGAGGTTTaGAAGGGTCCTTGTGGAGTT | + |
|
Preference number: 2 (lower is better) Translates to: GGGILEPIPRKIARMTELTQGEV*KGPCGV Trigger: AACTCCACAAGGACCCTTCCAAACCTCACCCTGTGT...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR CAA 90 bp | AAGGGGACTGATATAAAATGCTTCTGCCCAGCATGGTTGTGCAGTTaGTTCACTGCACAAGGGCACTTGGCCAAGGGAGTGAGTGGGACT | + |
|
Preference number: 2 (lower is better) Translates to: KGTDIKCFCPAWLCS*FTAQGHLAKGVSGT Trigger: AGTCCCACTCACTCCCTTGGCCAAGTGCCCTTGTGCAGTGAACAAACTGCACAACCATGCTGGGCAGAAGCATTTTATATCAGTCCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAACACTCTCCTGGAACATaGATGTGTTCGCCAACCCGG | + |
|
Preference number: 2 (lower is better) Translates to: IRGGLRTLPSFFSEETAQHSPGT*MCSPTR Trigger: CCGGGTTGGCGAACACATCCATGTTCCAGGAGAGTG...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTACTTTGTGTTAGGAACTaGGGGCAGAGACCAAATATA | + |
|
Preference number: 2 (lower is better) Translates to: GGGILEPIPRKIARMTELLCVRN*GQRPNI Trigger: TATATTTGGTCTCTGCCCCCAGTTCCTAACACAAAG...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAACATTGCACTCCAGCCTaGGGAATGAGCCAAACTGTC | + |
|
Preference number: 2 (lower is better) Translates to: IRGGLRTLPSFFSEETAQHCTPA*GMSQTV Trigger: GACAGTTTGGCTCATTCCCCAGGCTGGAGTGCAATG...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR-3UTR CCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAAGTAATCACAGCACTTTaGGATCACTTGAGGTTAGGA | + |
|
Preference number: 2 (lower is better) Translates to: IRGGLRTLPSFFSEETAQVITAL*DHLRLG Trigger: TCCTAACCTCAAGTGATCCCAAAGTGCTGTGATTAC...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| 3UTR GCA 72 bp | ATTAGAATTTTAGAATTAGAGGAGGGCTTAGAACTCTaGCCTCATTTTTCAGTGAGGAAACTGCCCAAGACA | + |
|
Preference number: 3 (lower is better) Translates to: IRILELEEGLEL*PHFSVRKLPKT Trigger: TGTCTTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAATTCTAAAATTCTAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTACAGAGCCTGCACACCTaGTGCTATGGGGGAGGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GGGILEPIPRKIARMTELQSLHT*CYGGGK Trigger: CTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCTCTG...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTAGTGAGCCTTGATGTGTaGTTCCTGGGCTTCTGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: GGGILEPIPRKIARMTELVSLDV*FLGFWH Trigger: GTGCCAGAAGCCCAGGAAGCACACATCAAGGCTCAC...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTACTGGGATTACAGGCATaGACCACTAGTCTCGCGACG | + |
|
Preference number: 4 (lower is better) Translates to: GGGILEPIPRKIARMTELLGLQA*TTSLAT Trigger: CGTCGCGAGACTAGTGGTGCATGCCTGTAATCCCAG...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAACTGACCACCAGAGCCTaGACACCTGCTGCTATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQLTTRA*TPAAMG Trigger: CCCCATAGCAGCAGGTGTGCAGGCTCTGGTGGTCAG...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAAAGCCTGCACACCTGCTaGTATGGGGGAGGAAAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQSLHTC*YGGGKD Trigger: ATCCTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCT...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAATTGTGGGGATGGGGTTaGACCACTGGCTTTCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQLWGWG*TTGFQA Trigger: AGCCTGAAAGCCAGTGGTGCAACCCCATCCCCACAA...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTACGAGATCATGTCTTTTaGAGGAACACAGATGGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: GGGILEPIPRKIARMTELRDHVF*RNTDGA Trigger: AGCTCCATCTGTGTTCCTGCAAAAGACATGATCTCG...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAAGTTGCCAGGCTGGAGTaGAATGACACGATCTCGGCT | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQVARLE*NDTISA Trigger: AGCCGAGATCGTGTCATTGCACTCCAGCCTGGCAAC...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | GGGGGCGGTATCCTAGAACCAATCCCCCGCAAGATAGCAAGGATGACTGAACTATTAATCGAATTCTGTTaGCACTCAAGGTACCGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: GGGILEPIPRKIARMTELLIEFC*HSRYRY Trigger: GTAGCGGTACCTTGAGTGGCAACAGAATTCGATTAA...TAGTTCAGTCATCCTTGCTATCTTGCGGGGGATTGGTTCTAGGATACCGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAAGTGCAGTTTGTTCACTaGACAAGGGCACTTGGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQVQFVH*TRALGQ Trigger: TTGGCCAAGTGCCCTTGTGCAGTGAACAAACTGCAC...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAATGCCCAGCATGGTTGTaGAGTTTGTTCACTGCACAA | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQCPAWL*SLFTAQ Trigger: TTGTGCAGTGAACAAACTGCACAACCATGCTGGGCA...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS-3UTR GCA 90 bp | ATTAGAGGAGGGCTTAGAACTCTGCCCTCATTTTTCAGTGAGGAAACTGCCCAAGAGGGCTTAGAACTCTaGCCTCATTTTTCAGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: IRGGLRTLPSFFSEETAQEGLEL*PHFSVR Trigger: CCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTC...TTGGGCAGTTTCCTCACTGAAAAATGAGGGCAGAGTTCTAAGCCCTCCTCTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS CCA 90 bp | GAGGTGCTAGAGGTGGTGAAGGTTGTGGGGATGGGGTTGCACCACTaGCTTTCAGGCTACTTTACCACAGCTGATTTCCAGAGGATGGAA | + |
|
Preference number: 5 (lower is better) Translates to: EVLEVVKVVGMGLHH*LSGYFTTADFQRME Trigger: TTCCATCCTCTGGAAATCAGCTGTGGTAAAGTAGCCTGAAAGCCAGTGGTGCAACCCCATCCCCACAACCTTCACCACCTCTAGCACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336125.6 ENST00000628873.1 |
||
| CDS GCA 72 bp | TTGGCAGCACCCCGCTGGCAAGTGAGCCTTGATGTGTaGTTCCTGGGCTTCTGGCACCCCGGAGGTCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: LAAPRWQVSLDV*FLGFWHPGGQG Trigger: GCCCTGACCTCCGGGGTGCCAGAAGCCCAGGAAGCACACATCAAGGCTCACTTGCCAGCGGGGTGCTGCCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628873.1 |
||
| CDS GCA 72 bp | TTGGCAGCACCCCGCTGGCAAGTGAGCCTTGATGTGTaGTTCCTGGGCTTCTGGCACCTTTTGTGTTCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LAAPRWQVSLDV*FLGFWHLLCSG Trigger: TCCAGAACACAAAAGGTGCCAGAAGCCCAGGAAGCACACATCAAGGCTCACTTGCCAGCGGGGTGCTGCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000336125.6 |
||
| CDS GCA 72 bp | TGGAGTCCAGCTGACCACCAGAGCCTGCACACCTGCTaGTATGGGGGAGGAAAGGATGACTTCTACCTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: WSPADHQSLHTC*YGGGKDDFYLL Trigger: AAGGAGGTAGAAGTCATCCTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCTCTGGTGGTCAGCTGGACTCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000336125.6 ENST00000628873.1 |
||
| CDS GCA 72 bp | GTATGGAGTCCAGCTGACCACCAGAGCCTGCACACCTaGTGCTATGGGGGAGGAAAGGATGACTTCTACCTC | + |
|
Preference number: 6 (lower is better) Translates to: VWSPADHQSLHT*CYGGGKDDFYL Trigger: GAGGTAGAAGTCATCCTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCTCTGGTGGTCAGCTGGACTCCATAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000336125.6 ENST00000628873.1 |
||
| CDS TCA 72 bp | GTGACTACATTTTATTGGCAGCACCCCGCTGGCAAGTaGGCCTTGATGTGTGCTTCCTGGGCTTCTGGCACC | + |
|
Preference number: 6 (lower is better) Translates to: VTTFYWQHPAGK*ALMCASWASGT Trigger: GGTGCCAGAAGCCCAGGAAGCACACATCAAGGCTCACTTGCCAGCGGGGTGCTGCCAATAAAATGTAGTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336125.6 ENST00000628873.1 |
||
| CDS TCA 72 bp | GAGCCTGCACACCTGCTGCTATGGGGGAGGAAAGGATaGCTTCTACCTCCTTTCCACATTCCAAATTCCACG | + |
|
Preference number: 6 (lower is better) Translates to: EPAHLLLWGRKG*LLPPFHIPNST Trigger: CGTGGAATTTGGAATGTGGAAAGGAGGTAGAAGTCATCCTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000336125.6 ENST00000628873.1 |
||
| CDS CAA 90 bp | TTCTACCTCCTTTCCACATTCCAAATTCCACGTGACTACATTTTATaGGCAGCACCCCGCTGGCAAGTGAGCCTTGATGTGTGCTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: FYLLSTFQIPRDYIL*AAPRWQVSLDVCFL Trigger: CAGGAAGCACACATCAAGGCTCACTTGCCAGCGGGGTGCTGCCAATAAAATGTAGTCACGTGGAATTTGGAATGTGGAAAGGAGGTAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000336125.6 ENST00000628873.1 |
||