Pregenerated sensors for ARL16 (Homo sapiens)

Ensembl gene IDs: ENSG00000214087

Ensembl transcript IDs: ENST00000573569.5, ENST00000577142.1, ENST00000622299.5

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCACCTCCTGCAGCCGTTTCACCAGCAGCGTCTTCCCGACGCCCGTaGCCCCCAGCAGGAGACACATTCCGTGCTTCGCTCCACCCGGCA	+
Preference number: 5 (lower is better) Translates to: SPPAAVSPAASSRRP*PPAGDTFRASLHPA Trigger: TGCCGGGTGGAGCGAAGCACGGAATGTGTCTCCTGCTGGGGGCCACGGGCGTCGGGAAGACGCTGCTGGTGAAACGGCTGCAGGAGGTGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000577142.1 ENST00000622299.5
CDS GCA 72 bp	CCGACGCCCGTGGCCCCCAGCAGGAGACACATTCCGTaGTTCGCTCCACCCGGCACCCGTAGCTCGGCGCCG	+
Preference number: 6 (lower is better) Translates to: PTPVAPSRRHIP*FAPPGTRSSAP Trigger: CGGCGCCGAGCTACGGGTGCCGGGTGGAGCGAAGCACGGAATGTGTCTCCTGCTGGGGGCCACGGGCGTCGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000622299.5
CDS GCA 72 bp	CGCGCCCCGGTCCCGTCCCCGCGCGGAAGGATATCCTaGAGCCGTTTCACCAGCAGCGTCTTCCCGACGCCC	+
Preference number: 6 (lower is better) Translates to: RAPVPSPRGRIS*SRFTSSVFPTP Trigger: GGGCGTCGGGAAGACGCTGCTGGTGAAACGGCTGCAGGATATCCTTCCGCGCGGGGACGGGACCGGGGCGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573569.5
CDS CCA 72 bp	GCAGCCGTTTCACCAGCAGCGTCTTCCCGACGCCCGTaGCCCCCAGCAGGAGACACATTCCGTGCTTCGCTC	+
Preference number: 6 (lower is better) Translates to: AAVSPAASSRRP*PPAGDTFRASL Trigger: GAGCGAAGCACGGAATGTGTCTCCTGCTGGGGGCCACGGGCGTCGGGAAGACGCTGCTGGTGAAACGGCTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000577142.1 ENST00000622299.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu