Pregenerated sensors for ARHGEF9-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000231729Ensembl transcript IDs: ENST00000420917.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTAACCATCATCAAGCCATGGAGCATCCATGTCTCATTGCTTTCTTaGGGAGACTCCCCAGCACTCACCCACCACCTGACTGGGATTTGG | + |
|
Preference number: 5 (lower is better) Translates to: LTIIKPWSIHVSLLS*GDSPALTHHLTGIW Trigger: CCAAATCCCAGTCAGGTGGTGGGTGAGTGCTGGGGAGTCTCCCCAAGAAAGCAATGAGACATGGATGCTCCATGGCTTGATGATGGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420917.1 |
||
| CDS TCA 90 bp | TCTTGGGCAGGTGGAATGCACAAAGAACCTATACCAGGGAACCTGTaGAATTGGGCCACCAATCCTAACCATCATCAAGCCATGGAGCAT | + |
|
Preference number: 5 (lower is better) Translates to: SWAGGMHKEPIPGNL*NWATNPNHHQAMEH Trigger: ATGCTCCATGGCTTGATGATGGTTAGGATTGGTGGCCCAATTTCACAGGTTCCCTGGTATAGGTTCTTTGTGCATTCCACCTGCCCAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420917.1 |
||
| CDS CAA 90 bp | CCTAACCATCATCAAGCCATGGAGCATCCATGTCTCATTGCTTTCTaGGGGAGACTCCCCAGCACTCACCCACCACCTGACTGGGATTTG | + |
|
Preference number: 6 (lower is better) Translates to: PNHHQAMEHPCLIAF*GRLPSTHPPPDWDL Trigger: CAAATCCCAGTCAGGTGGTGGGTGAGTGCTGGGGAGTCTCCCCAAGAAAGCAATGAGACATGGATGCTCCATGGCTTGATGATGGTTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420917.1 |
||
| CDS CAA 90 bp | CCACCAATCCTAACCATCATCAAGCCATGGAGCATCCATGTCTCATaGCTTTCTTGGGGAGACTCCCCAGCACTCACCCACCACCTGACT | + |
|
Preference number: 6 (lower is better) Translates to: PPILTIIKPWSIHVS*LSWGDSPALTHHLT Trigger: AGTCAGGTGGTGGGTGAGTGCTGGGGAGTCTCCCCAAGAAAGCAATGAGACATGGATGCTCCATGGCTTGATGATGGTTAGGATTGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420917.1 |
||
| CDS CAA 72 bp | CTAACCATCATCAAGCCATGGAGCATCCATGTCTCATaGCTTTCTTGGGGAGACTCCCCAGCACTCACCCAC | + |
|
Preference number: 6 (lower is better) Translates to: LTIIKPWSIHVS*LSWGDSPALTH Trigger: GTGGGTGAGTGCTGGGGAGTCTCCCCAAGAAAGCAATGAGACATGGATGCTCCATGGCTTGATGATGGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000420917.1 |
||