RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ARHGEF5 (Homo sapiens)

Ensembl gene IDs: ENSG00000050327, ENSG00000284933

Ensembl transcript IDs: ENST00000056217.10, ENST00000471847.2, ENST00000474817.5, ENST00000642803.2, ENST00000647153.2

Found 155 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGAC +
Preference number: 1 (lower is better)
Translates to: PQKASLAGFWGQPLP*AACSSAHETPLRED
Trigger: GTCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR GCA 90 bp TCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAG +
Preference number: 1 (lower is better)
Translates to: SIHRRPLLQGSGASP*HEQLVLQLTKLLSE
Trigger: CTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR TCA 90 bp AAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCT +
Preference number: 1 (lower is better)
Translates to: KGGLGRGTGLAGFCP*ALRRPSSPSTEGLS
Trigger: AGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR CCA 90 bp CATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTaGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAG +
Preference number: 1 (lower is better)
Translates to: HTAITETLASSESAP*RRRMFKHYKAVEGK
Trigger: CTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR GCA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTTCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTT +
Preference number: 2 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLASGASP*HEQLVL
Trigger: AAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGA...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR GCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAACAGAAGGCCTCTCTTaGAGGGTTCTGGGGCCAGCC +
Preference number: 2 (lower is better)
Translates to: SESAPWRRRMFKHYKAVETEGLS*RVLGPA
Trigger: GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGT...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CCA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCCTGGGCCGAGGGACTaGGTTAGCTGGATTTTGTCC +
Preference number: 2 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLPGPRD*VSWILS
Trigger: GGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGG...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR TCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCT +
Preference number: 2 (lower is better)
Translates to: REYHPHIATNRHRSQRHTGQPLP*AACSSA
Trigger: AGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCC...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTCCTGGGCCGAGGGACTaGGTTAGCTGGATTTTGTCC +
Preference number: 2 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGPGPRD*VSWILS
Trigger: GGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGG...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR TCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCT +
Preference number: 2 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNGQPLP*AACSSA
Trigger: AGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCC...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR GCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAATCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTT +
Preference number: 2 (lower is better)
Translates to: SESAPWRRRMFKHYKAVESGASP*HEQLVL
Trigger: AAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGA...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR GCA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAGTCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTT +
Preference number: 2 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGESGASP*HEQLVL
Trigger: AAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGA...CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR TCA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGT +
Preference number: 2 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLAGFCP*ALRRPS
Trigger: ACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGC...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR GCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATGTTCCCAGAGTCCAGTaGAAAGTCCCTCGAAATCCC +
Preference number: 2 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNVPRVQ*KVPRNP
Trigger: GGGATTTCGAGGGACTTTGCACTGGACTCTGGGAAC...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR TCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGATTTGTCCTTGAGCTTTaGGAAGGCCTAGTTCTCCAT +
Preference number: 2 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGFVLEL*EGLVLH
Trigger: ATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAA...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CCA 90 bp GAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAGGGACTGGGTTAGCTaGATTTTGTCCTTGAGCTTT +
Preference number: 2 (lower is better)
Translates to: ESAPWRRRMFKHYKAVEGRDWVS*ILSLSF
Trigger: AAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCT...TCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CCA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGAGGGACTGGGTTAGCTaGATTTTGTCCTTGAGCTTT +
Preference number: 2 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLRDWVS*ILSLSF
Trigger: AAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCT...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR TCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTTTTGTCCTTGAGCTTTaGGAAGGCCTAGTTCTCCAT +
Preference number: 2 (lower is better)
Translates to: REYHPHIATNRHRSQRHTFVLEL*EGLVLH
Trigger: ATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAA...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTAGGGACTGGGTTAGCTaGATTTTGTCCTTGAGCTTT +
Preference number: 2 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGRDWVS*ILSLSF
Trigger: AAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCT...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTCACAGAAGGCCTCTCTaGCAGGGTTCTGGGGCCAGC +
Preference number: 3 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLAHRRPL*QGSGAS
Trigger: GCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTG...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR TCA 72 bp GCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTC +
Preference number: 3 (lower is better)
Translates to: ASLAGFWGQPLP*AACSSAHETPL
Trigger: GAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR GCA 72 bp AGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTTCAGCTCACGAAACTC +
Preference number: 3 (lower is better)
Translates to: RRPLLQGSGASP*HEQLVLQLTKL
Trigger: GAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTCACAGAAGGCCTCTCTaGCAGGGTTCTGGGGCCAGC +
Preference number: 3 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGHRRPL*QGSGAS
Trigger: GCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTG...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR TCA 72 bp CTGGGCCGAGGGACTGGGTTAGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGTTCTCCATCCACAGAA +
Preference number: 3 (lower is better)
Translates to: LGRGTGLAGFCP*ALRRPSSPSTE
Trigger: TTCTGTGGATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR CCA 72 bp ATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTaGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTA +
Preference number: 3 (lower is better)
Translates to: ITETLASSESAP*RRRMFKHYKAV
Trigger: TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTCTTGCCATGAGCAGCTaGTTCTTCAGCTCACGAAAC +
Preference number: 3 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGLAMSS*FFSSRN
Trigger: GTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAG...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATCTTGCCATGAGCAGCTaGTTCTTCAGCTCACGAAAC +
Preference number: 3 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNLAMSS*FFSSRN
Trigger: GTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAG...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGATGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 3 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAACTTGCCATGAGCAGCTaGTTCTTCAGCTCACGAAAC +
Preference number: 3 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGELAMSS*FFSSRN
Trigger: GTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAG...TTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000056217.10
ENST00000474817.5
3UTR-3UTR CAA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAATGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 3 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
3UTR-3UTR CAA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 3 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCATGAACTCCACCTGCTaGACAGGAAACCAGCCTCGC +
Preference number: 4 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSMNSTC*TGNQPR
Trigger: GCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCAT...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTTTCCTTCAGGTTCTGTaGACGGACCTCTGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLAFLQVL*TDLWVG
Trigger: TCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAA...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCATCAGGGCTGAATCCTaGTCGGTGTCACATGCTGCT +
Preference number: 4 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSIRAES*SVSHAA
Trigger: AGCAGCATGTGACACCGACCAGGATTCAGCCCTGAT...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000056217.10
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCGCAGTCTTGACTCGATaGGCTTCCTTCAGGTTCTGT +
Preference number: 4 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSAVLTR*ASFRFC
Trigger: ACAGAACCTGAAGGAAGCTCATCGAGTCAAGACTGC...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp AGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCGTTCCCAGAGTCCAGTaGAAAGTCCCTCGAAATCCC +
Preference number: 4 (lower is better)
Translates to: RPSSPSTEGLSCRVLGPAVPRVQ*KVPRNP
Trigger: GGGATTTCGAGGGACTTTGCACTGGACTCTGGGAAC...GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp AGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTGTGCACGGACCTCTaGGTTGGAAATGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: RPSSPSTEGLSCRVLGPALCTDL*VGNELH
Trigger: GTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAG...GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTGTAGTTTGGCAGTCTTaGCTCGATGAGCTTCCTTCA +
Preference number: 4 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLAVVWQS*LDELPS
Trigger: TGAAGGAAGCTCATCGAGTCAAGACTGCCAAACTAC...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGGQPLP*AACSSA
Trigger: AGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCC...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGT +
Preference number: 4 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLAAGFCP*ALRRPS
Trigger: ACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGC...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTCCCGGAAATTGCTGTTaGTATTCATCAGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLAPGNCC*YSSGSG
Trigger: TCCAGAGCCTGATGAATAGCAACAGCAATTTCCGGG...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCAGGGACTGGGTTAGCTaGATTTTGTCCTTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSRDWVS*ILSLSF
Trigger: AAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCT...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCATCTCAGAGACACACTaGCCTTGCACCATAATTATG +
Preference number: 4 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSISETH*PCTIIM
Trigger: CATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGAT...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGATCAGGGCTGAATCCTaGTCGGTGTCACATGCTGCT +
Preference number: 4 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGIRAES*SVSHAA
Trigger: AGCAGCATGTGACACCGACCAGGATTCAGCCCTGAT...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000056217.10
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCTGTGCACGGACCTCTaGGTTGGAAATGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGLCTDL*VGNELH
Trigger: GTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAG...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp AGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCAGGGACTGGGTTAGCTaGATTTTGTCCTTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: RPSSPSTEGLSCRVLGPARDWVS*ILSLSF
Trigger: AAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCT...GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGACCTGGGCCGAGGGACTaGGTTAGCTGGATTTTGTCC +
Preference number: 4 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRPGPRD*VSWILS
Trigger: GGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGG...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGATCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTT +
Preference number: 4 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRSGASP*HEQLVL
Trigger: AAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGA...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGAACAGAAGGCCTCTCTTaGAGGGTTCTGGGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGTEGLS*RVLGPA
Trigger: GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGT...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAACCGTCACTGCTCTGCTaGGTCACCATCACCACGTCG +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEPSLLC*VTITTS
Trigger: CGACGTGGTGATGGTGACTCAGCAGAGCAGTGACGG...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVGQPLP*AACSSA
Trigger: AGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCC...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCCAGCCAGCCGTCACTaGTCTGCTGAGTCACCATCA +
Preference number: 4 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLPASRH*SAESPS
Trigger: TGATGGTGACTCAGCAGAGCAGTGACGGCTGGCTGG...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTACAGAAGGCCTCTCTTaGAGGGTTCTGGGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: REYHPHIATNRHRSQRHTTEGLS*RVLGPA
Trigger: GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGT...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTACAGAAGGCCTCTCTTaGAGGGTTCTGGGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGTEGLS*RVLGPA
Trigger: GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGT...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTACCTGGGCCGAGGGACTaGGTTAGCTGGATTTTGTCC +
Preference number: 4 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVPGPRD*VSWILS
Trigger: GGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGG...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGAAGAAGGAAAGTTCCTTaGCTCAGGCCCCAATGGTCC +
Preference number: 4 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRRRKVP*LRPQWS
Trigger: GGACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCT...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATCCGTCACTGCTCTGCTaGGTCACCATCACCACGTCG +
Preference number: 4 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNPSLLC*VTITTS
Trigger: CGACGTGGTGATGGTGACTCAGCAGAGCAGTGACGG...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGAGCAGTCTTGACTCGATaGGCTTCCTTCAGGTTCTGT +
Preference number: 4 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRAVLTR*ASFRFC
Trigger: ACAGAACCTGAAGGAAGCTCATCGAGTCAAGACTGC...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGGQPLP*AACSSA
Trigger: AGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCC...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGCCAGCCCTTGCCATaGGCAGCTTGTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEGQPLP*AACSSA
Trigger: AGCTGAAGAACAAGCTGCTCATGGCAAGGGCTGGCC...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCAGCCAGCCGTCACTaGTCTGCTGAGTCACCATCA +
Preference number: 4 (lower is better)
Translates to: RRMFKHYKAVEGKFLGSGPASRH*SAESPS
Trigger: TGATGGTGACTCAGCAGAGCAGTGACGGCTGGCTGG...GCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGAATGAACTCCACCTGCTaGACAGGAAACCAGCCTCGC +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGMNSTC*TGNQPR
Trigger: GCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCAT...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGAGAAATGAACTCCACCTaGTGCACAGGAAACCAGCCT +
Preference number: 4 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRREMNST*CTGNQP
Trigger: AGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTC...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp GAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGATCTGGGGCCAGCCCTTaGCATGAGCAGCTTGTTCTT +
Preference number: 4 (lower is better)
Translates to: ESAPWRRRMFKHYKAVEGSGASP*HEQLVL
Trigger: AAGAACAAGCTGCTCATGGCAAGGGCTGGCCCCAGA...TCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTCCTGGGCCGAGGGACTaGGTTAGCTGGATTTTGTCC +
Preference number: 4 (lower is better)
Translates to: REYHPHIATNRHRSQRHTPGPRD*VSWILS
Trigger: GGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGG...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAACCTGGGCCGAGGGACTaGGTTAGCTGGATTTTGTCC +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEPGPRD*VSWILS
Trigger: GGACAAAATCCAGCTAACCCAGTCCCTCGGCCCAGG...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCAATCAGCTCAAATTTaGCCTCTTGCAGCTTTTGGT +
Preference number: 4 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGQSAQI*PLAAFG
Trigger: ACCAAAAGCTGCAAGAGGTCAAATTTGAGCTGATTG...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAACCTCTGGGTTGGAAATaGACTCCACCTGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEPLGWK*TPPAAQ
Trigger: CTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGG...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTCCTCTGGGTTGGAAATaGACTCCACCTGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGPLGWK*TPPAAQ
Trigger: CTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGG...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGATCTCAGAGACACACTaGCCTTGCACCATAATTATG +
Preference number: 4 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGISETH*PCTIIM
Trigger: CATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGAT...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTATGAACTCCACCTGCTaGACAGGAAACCAGCCTCGC +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGMNSTC*TGNQPR
Trigger: GCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCAT...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGATTCCTTCAGGTTCTGTaGACGGACCTCTGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGFLQVL*TDLWVG
Trigger: TCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAA...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAAACAGAAGGCCTCTCTTaGAGGGTTCTGGGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGETEGLS*RVLGPA
Trigger: GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGT...TTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000056217.10
ENST00000474817.5
CDS-3UTR GCA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGTTCCCAGAGTCCAGTaGAAAGTCCCTCGAAATCCC +
Preference number: 4 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVVPRVQ*KVPRNP
Trigger: GGGATTTCGAGGGACTTTGCACTGGACTCTGGGAAC...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGAGTTCCCAGAGTCCAGTaGAAAGTCCCTCGAAATCCC +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGVPRVQ*KVPRNP
Trigger: GGGATTTCGAGGGACTTTGCACTGGACTCTGGGAAC...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTACTGTGCACGGACCTCTaGGTTGGAAATGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVLCTDL*VGNELH
Trigger: GTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAG...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGAGAAGGAAAGTTCCTTaGCTCAGGCCCCAATGGTCC +
Preference number: 4 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLRRKVP*LRPQWS
Trigger: GGACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCT...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATCCTCTGGGTTGGAAATaGACTCCACCTGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNPLGWK*TPPAAQ
Trigger: CTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGG...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGGAAATGAACTCCACCTaGTGCACAGGAAACCAGCCT +
Preference number: 4 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLEMNST*CTGNQP
Trigger: AGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTC...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTTTCCTTCAGGTTCTGTaGACGGACCTCTGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: REYHPHIATNRHRSQRHTFLQVL*TDLWVG
Trigger: TCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAA...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTGTTCCCAGAGTCCAGTaGAAAGTCCCTCGAAATCCC +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGVPRVQ*KVPRNP
Trigger: GGGATTTCGAGGGACTTTGCACTGGACTCTGGGAAC...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp CGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCATCAGGGCTGAATCCTaGTCGGTGTCACATGCTGCT +
Preference number: 4 (lower is better)
Translates to: RRMFKHYKAVEGKFLGSGIRAES*SVSHAA
Trigger: AGCAGCATGTGACACCGACCAGGATTCAGCCCTGAT...GCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000056217.10
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGACTCTTCAGAATGTTCTaGAGCAGCAGTTTGAGGCGG +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGLFRMF*SSSLRR
Trigger: CCGCCTCAAACTGCTGCTCCAGAACATTCTGAAGAG...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTAGAAGGAAAGTTCCTTaGCTCAGGCCCCAATGGTCC +
Preference number: 4 (lower is better)
Translates to: REYHPHIATNRHRSQRHTRRKVP*LRPQWS
Trigger: GGACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCT...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAAGAAGGAAAGTTCCTTaGCTCAGGCCCCAATGGTCC +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVERRKVP*LRPQWS
Trigger: GGACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCT...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGCAGTCTTGACTCGATaGGCTTCCTTCAGGTTCTGT +
Preference number: 4 (lower is better)
Translates to: REYHPHIATNRHRSQRHTAVLTR*ASFRFC
Trigger: ACAGAACCTGAAGGAAGCTCATCGAGTCAAGACTGC...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGCAGTCTTGACTCGATaGGCTTCCTTCAGGTTCTGT +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEAVLTR*ASFRFC
Trigger: ACAGAACCTGAAGGAAGCTCATCGAGTCAAGACTGC...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGAGTAGTTTGGCAGTCTTaGCTCGATGAGCTTCCTTCA +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGVVWQS*LDELPS
Trigger: TGAAGGAAGCTCATCGAGTCAAGACTGCCAAACTAC...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGT +
Preference number: 4 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVAGFCP*ALRRPS
Trigger: ACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGC...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAGTTCCTTCAGGTTCTGTaGACGGACCTCTGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGEFLQVL*TDLWVG
Trigger: TCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAA...CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp CGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCTCTTCAGAATGTTCTaGAGCAGCAGTTTGAGGCGG +
Preference number: 4 (lower is better)
Translates to: RRMFKHYKAVEGKFLGSGLFRMF*SSSLRR
Trigger: CCGCCTCAAACTGCTGCTCCAGAACATTCTGAAGAG...GCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGATCTGAATCTGCACCCTaGAGGCGGAGAATGTTTAAG +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGSESAP*RRRMFK
Trigger: CTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTATTTGTCCTTGAGCTTTaGGAAGGCCTAGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVFVLEL*EGLVLH
Trigger: ATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAA...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp GAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGATTTGTCCTTGAGCTTTaGGAAGGCCTAGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: ESAPWRRRMFKHYKAVEGFVLEL*EGLVLH
Trigger: ATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAA...TCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGT +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGAGFCP*ALRRPS
Trigger: ACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGC...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTCCCGGAAATTGCTGTTaGTATTCATCAGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: REYHPHIATNRHRSQRHTPGNCC*YSSGSG
Trigger: TCCAGAGCCTGATGAATAGCAACAGCAATTTCCGGG...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAACCCGGAAATTGCTGTTaGTATTCATCAGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVEPGNCC*YSSGSG
Trigger: TCCAGAGCCTGATGAATAGCAACAGCAATTTCCGGG...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR GCA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAGGAAATGAACTCCACCTaGTGCACAGGAAACCAGCCT +
Preference number: 4 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGEEMNST*CTGNQP
Trigger: AGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTC...CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCCAATGGTTCTGAATCTGCACCCTaGAGGCGGAGAATGTTTAAG +
Preference number: 4 (lower is better)
Translates to: FKHYKAVEGKFLGSGPNGSESAP*RRRMFK
Trigger: CTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA...ACCATTGGGGCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGACAATCAGCTCAAATTTaGCCTCTTGCAGCTTTTGGT +
Preference number: 4 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGQSAQI*PLAAFG
Trigger: ACCAAAAGCTGCAAGAGGTCAAATTTGAGCTGATTG...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATGCTGGATTTTGTCCTTaGGCTTTGAGAAGGCCTAGT +
Preference number: 4 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNAGFCP*ALRRPS
Trigger: ACTAGGCCTTCTCAAAGCTCAAGGACAAAATCCAGC...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAAGGGACTGGGTTAGCTaGATTTTGTCCTTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: SESAPWRRRMFKHYKAVERDWVS*ILSLSF
Trigger: AAAGCTCAAGGACAAAATCCAGCTAACCCAGTCCCT...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTCTGAATCTGCACCCTaGAGGCGGAGAATGTTTAAG +
Preference number: 4 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNSESAP*RRRMFK
Trigger: CTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp CGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCAATCAGCTCAAATTTaGCCTCTTGCAGCTTTTGGT +
Preference number: 4 (lower is better)
Translates to: RRMFKHYKAVEGKFLGSGQSAQI*PLAAFG
Trigger: ACCAAAAGCTGCAAGAGGTCAAATTTGAGCTGATTG...GCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR TCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTTTGTCCTTGAGCTTTaGGAAGGCCTAGTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNFVLEL*EGLVLH
Trigger: ATGGAGAACTAGGCCTTCTCAAAGCTCAAGGACAAA...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CCA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAATCTGAATCTGCACCCTaGAGGCGGAGAATGTTTAAG +
Preference number: 4 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGESESAP*RRRMFK
Trigger: CTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA...TTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000056217.10
ENST00000474817.5
CDS-3UTR TCA 90 bp ACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATATCTCAGAGACACACTaGCCTTGCACCATAATTATG +
Preference number: 4 (lower is better)
Translates to: TLPPTDIDLRDTLTLHHNISETH*PCTIIM
Trigger: CATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGAT...ATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCACAGAAGGCCTCTCTaGCAGGGTTCTGGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: RPSSPSTEGLSCRVLGPAHRRPL*QGSGAS
Trigger: GCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTG...GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS GCA 90 bp AGGTTCTGTGCACGGACCTCTGGGTTGGAAATGAACTCCACCTGCTaGACAGGAAACCAGCCTCGCTCCCCGTCTGAGAGCCTCACGCCC +
Preference number: 5 (lower is better)
Translates to: RFCARTSGLEMNSTC*TGNQPRSPSESLTP
Trigger: GGGCGTGAGGCTCTCAGACGGGGAGCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCCCACGGCTGGACCTCTaGAATCTGAAGAGCCCTCAG +
Preference number: 5 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSPRLDL*NLKSPQ
Trigger: CTGAGGGCTCTTCAGATTCAAGAGGTCCAGCCGTGG...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTGCACGGACCTCTGGGTaGGAAATGAACTCCACCTGC +
Preference number: 5 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLAARTSG*EMNSTC
Trigger: GCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGC...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCGCACGGACCTCTGGGTaGGAAATGAACTCCACCTGC +
Preference number: 5 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSARTSG*EMNSTC
Trigger: GCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGC...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS GCA 90 bp TTCAGGTTCTGTGCACGGACCTCTGGGTTGGAAATGAACTCCACCTaGTGCACAGGAAACCAGCCTCGCTCCCCGTCTGAGAGCCTCACG +
Preference number: 5 (lower is better)
Translates to: FRFCARTSGLEMNST*CTGNQPRSPSESLT
Trigger: CGTGAGGCTCTCAGACGGGGAGCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS TCA 90 bp GATGAGCTTCCTTCAGGTTCTGTGCACGGACCTCTGGGTTGGAAATaGACTCCACCTGCTGCACAGGAAACCAGCCTCGCTCCCCGTCTG +
Preference number: 5 (lower is better)
Translates to: DELPSGSVHGPLGWK*TPPAAQETSLAPRL
Trigger: CAGACGGGGAGCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAAGCTCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCCTTGCCATGAGCAGCTaGTTCTTCAGCTCACGAAAC +
Preference number: 5 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSLAMSS*FFSSRN
Trigger: GTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAG...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS GCA 90 bp GTCACTGCTCTGCTGAGTCACCATCACCACGTCGGCTTTCTCCAGTaGCAATTCATCATTCTCTCGGGGCTTGTAGGCTCGAAGGCACTG +
Preference number: 5 (lower is better)
Translates to: VTALLSHHHHVGFLQ*QFIILSGLVGSKAL
Trigger: CAGTGCCTTCGAGCCTACAAGCCCCGAGAGAATGATGAATTGGCACTGGAGAAAGCCGACGTGGTGATGGTGACTCAGCAGAGCAGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTAGAGACACACTGACCTaGCACCATAATTATGGTGAG +
Preference number: 5 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLARDTLT*HHNYGE
Trigger: CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCT...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCCTTGCCATGAGCAGAGACACACTGACCTaGCACCATAATTATGGTGAG +
Preference number: 5 (lower is better)
Translates to: PSTEGLSCRVLGPALAMSRDTLT*HHNYGE
Trigger: CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCT...GCTCATGGCAAGGGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS CCA 90 bp AGTCTTGACTCGATGAGCTTCCTTCAGGTTCTGTGCACGGACCTCTaGGTTGGAAATGAACTCCACCTGCTGCACAGGAAACCAGCCTCG +
Preference number: 5 (lower is better)
Translates to: SLDSMSFLQVLCTDL*VGNELHLLHRKPAS
Trigger: CGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAAGCTCATCGAGTCAAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGACCACGGCTGGACCTCTaGAATCTGAAGAGCCCTCAG +
Preference number: 5 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRPRLDL*NLKSPQ
Trigger: CTGAGGGCTCTTCAGATTCAAGAGGTCCAGCCGTGG...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCGAAGCTTTTCACTTaGAGTCTCCGTGCGGAAGAG +
Preference number: 5 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGPKLFT*SLRAEE
Trigger: CTCTTCCGCACGGAGACTCAAAGTGAAAAGCTTCGG...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000056217.10
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGACACAGAAGGCCTCTCTaGCAGGGTTCTGGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGHRRPL*QGSGAS
Trigger: GCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTG...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTACACAGAAGGCCTCTCTaGCAGGGTTCTGGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVHRRPL*QGSGAS
Trigger: GCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTG...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCCCACCAAGCACAAAGCACGAAAGGAGGCCTGGGCCGAGGGACTGGGTTAGCTAGAGACACACTGACCTaGCACCATAATTATGGTGAA +
Preference number: 5 (lower is better)
Translates to: PHQAQSTKGGLGRGTGLARDTLT*HHNYGE
Trigger: TTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCT...AGCTAACCCAGTCCCTCGGCCCAGGCCTCCTTTCGTGCTTTGTGCTTGGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000056217.10
ENST00000474817.5
CDS-3UTR CAA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTCACAGAAGGCCTCTCTaGCAGGGTTCTGGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: REYHPHIATNRHRSQRHTHRRPL*QGSGAS
Trigger: GCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTG...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGCCAGCCATGAGCGGGAATATTTaGCACTCAAACTCAATCTTC +
Preference number: 5 (lower is better)
Translates to: RPSSPSTEGLSCRVLGPAMSGNI*HSNSIF
Trigger: GAAGATTGAGTTTGAGTGCAAAATATTCCCGCTCAT...GGCTGGCCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCCCACGGCTGGACCTCTaGAATCTGAAGAGCCCTCAG +
Preference number: 5 (lower is better)
Translates to: RRMFKHYKAVEGKFLGSGPRLDL*NLKSPQ
Trigger: CTGAGGGCTCTTCAGATTCAAGAGGTCCAGCCGTGG...GCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGATCCCGGAAATTGCTGTaGCTATTCATCAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRSRKLL*LFIRLW
Trigger: CCAGAGCCTGATGAATAGCAACAGCAATTTCCGGGA...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGACTTGCCATGAGCAGCTaGTTCTTCAGCTCACGAAAC +
Preference number: 5 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRLAMSS*FFSSRN
Trigger: GTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAG...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TTGAGAAGGCCTAGTTCTCCATCCACAGAAGGCCTCTCTTGCAGGGTTCTGGGGACAATCAGCTCAAATTaGACCTCTTGCAGCTTTTGG +
Preference number: 5 (lower is better)
Translates to: LRRPSSPSTEGLSCRVLGTISSN*TSCSFW
Trigger: CCAAAAGCTGCAAGAGGTCAAATTTGAGCTGATTGT...CCCCAGAACCCTGCAAGAGAGGCCTTCTGTGGATGGAGAACTAGGCCTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAGGCACGGACCTCTGGGTaGGAAATGAACTCCACCTGC +
Preference number: 5 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGEARTSG*EMNSTC
Trigger: GCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGC...CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGATCCCGGAAATTGCTGTaGCTATTCATCAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGSRKLL*LFIRLW
Trigger: CCAGAGCCTGATGAATAGCAACAGCAATTTCCGGGA...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGTCCCGGAAATTGCTGTaGCTATTCATCAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLSRKLL*LFIRLW
Trigger: CCAGAGCCTGATGAATAGCAACAGCAATTTCCGGGA...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TTTAACATACGGCTATCACTGAAACTCTGGCCAGCTCTGAATCTGCACCCTGGACTTGCCATGAGCAGCTaGTTCTTCAGCTCACGAAAC +
Preference number: 5 (lower is better)
Translates to: FNIRLSLKLWPALNLHPGLAMSS*FFSSRN
Trigger: GTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAG...TCCAGGGTGCAGATTCAGAGCTGGCCAGAGTTTCAGTGATAGCCGTATGTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGAAGTATCACCCTCACATaGCCACCAACAGACATAGAT +
Preference number: 5 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRSITLT*PPTDID
Trigger: ATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACT...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GCCCTTGCCATGAGCAGCTTGTTCTTCAGCTCACGAAACTCCTCTCAGAGAAGAACAATCAGCTCAAATTaGACCTCTTGCAGCTTTTGG +
Preference number: 5 (lower is better)
Translates to: ALAMSSLFFSSRNSSQRRTISSN*TSCSFW
Trigger: CCAAAAGCTGCAAGAGGTCAAATTTGAGCTGATTGT...TCTTCTCTGAGAGGAGTTTCGTGAGCTGAAGAACAAGCTGCTCATGGCAAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAATCCCGGAAATTGCTGTaGCTATTCATCAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: SESAPWRRRMFKHYKAVESRKLL*LFIRLW
Trigger: CCAGAGCCTGATGAATAGCAACAGCAATTTCCGGGA...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAGCCGAAGCTTTTCACTTaGAGTCTCCGTGCGGAAGAG +
Preference number: 5 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGEPKLFT*SLRAEE
Trigger: CTCTTCCGCACGGAGACTCAAAGTGAAAAGCTTCGG...CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTATGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 5 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGATGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 5 (lower is better)
Translates to: ESAPWRRRMFKHYKAVEGWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...TCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGCTCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAAGTATCACCCTCACATaGCCACCAACAGACATAGAT +
Preference number: 5 (lower is better)
Translates to: SSESAPWRRRMFKHYKAVSITLT*PPTDID
Trigger: ATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACT...TACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTTGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 5 (lower is better)
Translates to: REYHPHIATNRHRSQRHTWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp AGAGAGTATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTAGTATCACCCTCACATaGCCACCAACAGACATAGAT +
Preference number: 5 (lower is better)
Translates to: REYHPHIATNRHRSQRHTSITLT*PPTDID
Trigger: ATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACT...AGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGATACTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp ATCACCCTCACATTGCCACCAACAGACATAGATCTCAGAGACACACTGACCTTGATGAGCGGGAATATTTaGCACTCAAACTCAATCTTC +
Preference number: 5 (lower is better)
Translates to: ITLTLPPTDIDLRDTLTLMSGNI*HSNSIF
Trigger: GAAGATTGAGTTTGAGTGCAAAATATTCCCGCTCAT...CAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGGTGGCAATGTGAGGGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp GAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAATGAGCGGGAATATTTaGCACTCAAACTCAATCTTC +
Preference number: 5 (lower is better)
Translates to: ESAPWRRRMFKHYKAVEGMSGNI*HSNSIF
Trigger: GAAGATTGAGTTTGAGTGCAAAATATTCCCGCTCAT...TCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp CCAACAGACATAGATCTCAGAGACACACTGACCTTGCACCATAATTATGGTGAGTGGGTTAGCTGGATTTaGTCCTTGAGCTTTGAGAAG +
Preference number: 5 (lower is better)
Translates to: PTDIDLRDTLTLHHNYGEWVSWI*SLSFEK
Trigger: CTTCTCAAAGCTCAAGGACAAAATCCAGCTAACCCA...CTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCTGAGATCTATGTCTGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000642803.2
ENST00000647153.2
CDS-3UTR CAA 90 bp TCTGAATCTGCACCCTGGAGGCGGAGAATGTTTAAGCACTATAAGGCAGTAGAAAGAGACACACTGACCTaGCACCATAATTATGGTGAA +
Preference number: 5 (lower is better)
Translates to: SESAPWRRRMFKHYKAVERDTLT*HHNYGE
Trigger: TTCACCATAATTATGGTGCAAGGTCAGTGTGTCTCT...TTCTACTGCCTTATAGTGCTTAAACATTCTCCGCCTCCAGGGTGCAGATTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000056217.10
ENST00000474817.5
CDS-3UTR CAA 90 bp CGGAGAATGTTTAAGCACTATAAGGCAGTAGAAGGAAAGTTCCTTGGCTCAGGCATGAGCGGGAATATTTaGCACTCAAACTCAATCTTC +
Preference number: 5 (lower is better)
Translates to: RRMFKHYKAVEGKFLGSGMSGNI*HSNSIF
Trigger: GAAGATTGAGTTTGAGTGCAAAATATTCCCGCTCAT...GCCTGAGCCAAGGAACTTTCCTTCTACTGCCTTATAGTGCTTAAACATTCTCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000056217.10
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS TCA 72 bp AGCCTCACGCCCTCCAGCCAGCCGTCACTGCTCTGCTaGGTCACCATCACCACGTCGGCTTTCTCCAGTGCC +
Preference number: 6 (lower is better)
Translates to: SLTPSSQPSLLC*VTITTSAFSSA
Trigger: GGCACTGGAGAAAGCCGACGTGGTGATGGTGACTCAGCAGAGCAGTGACGGCTGGCTGGAGGGCGTGAGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS GCA 72 bp GCACGGACCTCTGGGTTGGAAATGAACTCCACCTGCTaGACAGGAAACCAGCCTCGCTCCCCGTCTGAGAGC +
Preference number: 6 (lower is better)
Translates to: ARTSGLEMNSTC*TGNQPRSPSES
Trigger: GCTCTCAGACGGGGAGCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS GCA 72 bp TGTGCACGGACCTCTGGGTTGGAAATGAACTCCACCTaGTGCACAGGAAACCAGCCTCGCTCCCCGTCTGAG +
Preference number: 6 (lower is better)
Translates to: CARTSGLEMNST*CTGNQPRSPSE
Trigger: CTCAGACGGGGAGCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS TCA 72 bp CCTTCAGGTTCTGTGCACGGACCTCTGGGTTGGAAATaGACTCCACCTGCTGCACAGGAAACCAGCCTCGCT +
Preference number: 6 (lower is better)
Translates to: PSGSVHGPLGWK*TPPAAQETSLA
Trigger: AGCGAGGCTGGTTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS TCA 72 bp TGTTCCACCAGCTGTAGTTTGGCAGTCTTGACTCGATaGGCTTCCTTCAGGTTCTGTGCACGGACCTCTGGG +
Preference number: 6 (lower is better)
Translates to: CSTSCSLAVLTR*ASFRFCARTSG
Trigger: CCCAGAGGTCCGTGCACAGAACCTGAAGGAAGCTCATCGAGTCAAGACTGCCAAACTACAGCTGGTGGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS GCA 72 bp GGCAGTCTTGACTCGATGAGCTTCCTTCAGGTTCTGTaGACGGACCTCTGGGTTGGAAATGAACTCCACCTG +
Preference number: 6 (lower is better)
Translates to: GSLDSMSFLQVL*TDLWVGNELHL
Trigger: CAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAAGCTCATCGAGTCAAGACTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2
CDS CCA 72 bp TCGATGAGCTTCCTTCAGGTTCTGTGCACGGACCTCTaGGTTGGAAATGAACTCCACCTGCTGCACAGGAAA +
Preference number: 6 (lower is better)
Translates to: SMSFLQVLCTDL*VGNELHLLHRK
Trigger: TTTCCTGTGCAGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAAGCTCATCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000056217.10
ENST00000471847.2
ENST00000474817.5
ENST00000642803.2
ENST00000647153.2