Pregenerated sensors for ARFGEF1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000271966Ensembl transcript IDs: ENST00000607397.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGTCGAGTGATGCAGGCGGAGACCCTGCGGCTGAGAACGGGCGATaGGGGTGTTGCTGTGACCCCTGGAATGCAAAGGACTGCACCCCC | + |
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Preference number: 5 (lower is better) Translates to: ESSDAGGDPAAENGR*GCCCDPWNAKDCTP Trigger: GGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTTCTCAGCCGCAGGGTCTCCGCCTGCATCACTCGACTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS GCA 90 bp | GATGCAGGCGGAGACCCTGCGGCTGAGAACGGGCGATGCGGGTGTTaGTGTGACCCCTGGAATGCAAAGGACTGCACCCCCATCAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: DAGGDPAAENGRCGC*CDPWNAKDCTPIRK Trigger: CTTTCTGATGGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTTCTCAGCCGCAGGGTCTCCGCCTGCATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS CCA 90 bp | GACCCTGCGGCTGAGAACGGGCGATGCGGGTGTTGCTGTGACCCCTaGAATGCAAAGGACTGCACCCCCATCAGAAAGTTAGAAAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: DPAAENGRCGCCCDP*NAKDCTPIRKLESQ Trigger: CTGGCTTTCTAACTTTCTGATGGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTTCTCAGCCGCAGGGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS GCA 90 bp | AACGGGCGATGCGGGTGTTGCTGTGACCCCTGGAATGCAAAGGACTaGACCCCCATCAGAAAGTTAGAAAGCCAGTGCAGAGTAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: NGRCGCCCDPWNAKD*TPIRKLESQCRVAR Trigger: CCTGGCTACTCTGCACTGGCTTTCTAACTTTCTGATGGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS GCA 90 bp | TGGAATGCAAAGGACTGCACCCCCATCAGAAAGTTAGAAAGCCAGTaGAGAGTAGCCAGGAGTCCTGTTCACTCGGCAGGAGCAGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: WNAKDCTPIRKLESQ*RVARSPVHSAGAGV Trigger: CACCCCTGCTCCTGCCGAGTGAACAGGACTCCTGGCTACTCTGCACTGGCTTTCTAACTTTCTGATGGGGGTGCAGTCCTTTGCATTCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS CCA 90 bp | AACATTAGGGAACCTGTGTGCGTGGAGCCACAGAAGCTTAGAACTTaGAGACGTGACCCTAGATCACCATATATAATGTTTGCAAATATT | + |
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Preference number: 5 (lower is better) Translates to: NIREPVCVEPQKLRT*RRDPRSPYIMFANI Trigger: AATATTTGCAAACATTATATATGGTGATCTAGGGTCACGTCTCCAAGTTCTAAGCTTCTGTGGCTCCACGCACACAGGTTCCCTAATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS GCA 72 bp | GGAGACCCTGCGGCTGAGAACGGGCGATGCGGGTGTTaGTGTGACCCCTGGAATGCAAAGGACTGCACCCCC | + |
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Preference number: 6 (lower is better) Translates to: GDPAAENGRCGC*CDPWNAKDCTP Trigger: GGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTTCTCAGCCGCAGGGTCTCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS GCA 72 bp | GATGCAGGCGGAGACCCTGCGGCTGAGAACGGGCGATaGGGGTGTTGCTGTGACCCCTGGAATGCAAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: DAGGDPAAENGR*GCCCDPWNAKD Trigger: GTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTTCTCAGCCGCAGGGTCTCCGCCTGCATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS CCA 72 bp | GCTGAGAACGGGCGATGCGGGTGTTGCTGTGACCCCTaGAATGCAAAGGACTGCACCCCCATCAGAAAGTTA | + |
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Preference number: 6 (lower is better) Translates to: AENGRCGCCCDP*NAKDCTPIRKL Trigger: TAACTTTCTGATGGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCATCGCCCGTTCTCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS GCA 72 bp | TGCGGGTGTTGCTGTGACCCCTGGAATGCAAAGGACTaGACCCCCATCAGAAAGTTAGAAAGCCAGTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: CGCCCDPWNAKD*TPIRKLESQCR Trigger: TCTGCACTGGCTTTCTAACTTTCTGATGGGGGTGCAGTCCTTTGCATTCCAGGGGTCACAGCAACACCCGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS CCA 72 bp | GAACCTGTGTGCGTGGAGCCACAGAAGCTTAGAACTTaGAGACGTGACCCTAGATCACCATATATAATGTTT | + |
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Preference number: 6 (lower is better) Translates to: EPVCVEPQKLRT*RRDPRSPYIMF Trigger: AAACATTATATATGGTGATCTAGGGTCACGTCTCCAAGTTCTAAGCTTCTGTGGCTCCACGCACACAGGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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| CDS CCA 72 bp | AAATTTGAGTTCTACACTCAGACTAAAGCAAACACATaGTCACGTGTGTTAATCTGTTTGTACTTAAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: KFEFYTQTKANT*SRVLICLYLKL Trigger: AAGCTTTAAGTACAAACAGATTAACACACGTGACCATGTGTTTGCTTTAGTCTGAGTGTAGAACTCAAATTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607397.1 |
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