Pregenerated sensors for APP-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000273492Ensembl transcript IDs: ENST00000608591.5, ENST00000609365.2, ENST00000664668.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CATCCATCATCTGCTCCTGCCCTTGACTTCAGAGCTCCAGGTTCTTaGGCCTTCAATACCAGCAGACACTCTTCAGCCCTTCAGCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: HPSSAPALDFRAPGS*AFNTSRHSSALQLH Trigger: GTGAAGCTGAAGGGCTGAAGAGTGTCTGCTGGTATTGAAGGCTCAAGAACCTGGAGCTCTGAAGTCAAGGGCAGGAGCAGATGATGGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 90 bp | CACAGAGCCAAACCATATCAGGCAGTGAATATAATCACATGCACCTaGGGGTTGAGGGAACTAAGAGTGACAGCAGTTAATCCCTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: HRAKPYQAVNIITCT*GLRELRVTAVNPWP Trigger: GGGCCAGGGATTAACTGCTGTCACTCTTAGTTCCCTCAACCCTCAGGTGCATGTGATTATATTCACTGCCTGATATGGTTTGGCTCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS TCA 90 bp | AGGAATCATAAAAGAGGTGGAGGAAGGCAAATTTGCTCTCTCTTCTaGAGCTGGGACATCCATCATCTGCTCCTGCCCTTGACTTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: RNHKRGGGRQICSLF*SWDIHHLLLPLTSE Trigger: CTCTGAAGTCAAGGGCAGGAGCAGATGATGGATGTCCCAGCTTCAGAAGAGAGAGCAAATTTGCCTTCCTCCACCTCTTTTATGATTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 90 bp | TCCTTGAAACTCTTCACCAATCTTCATAGGGCCTTGGCCACTTCTTaGGGGCCCTCCCACCAGATGATTAAAGGCAATACAGTGAACGAA | + |
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Preference number: 5 (lower is better) Translates to: SLKLFTNLHRALATS*GPSHQMIKGNTVNE Trigger: TTCGTTCACTGTATTGCCTTTAATCATCTGGTGGGAGGGCCCTCAAGAAGTGGCCAAGGCCCTATGAAGATTGGTGAAGAGTTTCAAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS GCA 90 bp | AGCTTCACATGCAAGAATTACACTGGATTTCCTGGTTCTTCGGCTTaGAGGGGGCACATATTGGAACTTCTTGGCCTTTATAATCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SFTCKNYTGFPGSSA*RGHILELLGLYNLL Trigger: CAGGAGATTATAAAGGCCAAGAAGTTCCAATATGTGCCCCCTGCAAGCCGAAGAACCAGGAAATCCAGTGTAATTCTTGCATGTGAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 90 bp | ATGGGTCTTGATGTTACAGAATCTCCAAATTTAGGTCTGTGCACCTaGTGCATGGTAAGCCAAACACTGACACATCAGCACTCAGGAACA | + |
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Preference number: 5 (lower is better) Translates to: MGLDVTESPNLGLCT*CMVSQTLTHQHSGT Trigger: TGTTCCTGAGTGCTGATGTGTCAGTGTTTGGCTTACCATGCATCAGGTGCACAGACCTAAATTTGGAGATTCTGTAACATCAAGACCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS TCA 90 bp | TCTCTCAAAATTAATCCCATAGCTGTCTCCTTCAATTCTCCTCCTTaGAACTCTTCACCAATCTTCATAGGGCCTTGGCCACTTCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: SLKINPIAVSFNSPP*NSSPIFIGPWPLLE Trigger: CTCAAGAAGTGGCCAAGGCCCTATGAAGATTGGTGAAGAGTTTCAAGGAGGAGAATTGAAGGAGACAGCTATGGGATTAATTTTGAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS GCA 90 bp | TATTTCTCAAAGTTACTTGATTACAGAATTCTTTTCGGGTATGCATaGAATACCGAGCAACATATGACCGAGCTAGGGTTCCATGGTACA | + |
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Preference number: 5 (lower is better) Translates to: YFSKLLDYRILFGYA*NTEQHMTELGFHGT Trigger: TGTACCATGGAACCCTAGCTCGGTCATATGTTGCTCGGTATTGCATGCATACCCGAAAAGAATTCTGTAATCAAGTAACTTTGAGAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 90 bp | AGGTTAGGATATGAAGTTAATCAATTATTAGTGACTACCCTCTACTaGAATAATGACATGCAAGCAAGCACGCATAGAGCAAGAAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: RLGYEVNQLLVTTLY*NNDMQASTHRARKG Trigger: TCCTTTTCTTGCTCTATGCGTGCTTGCTTGCATGTCATTATTTCAGTAGAGGGTAGTCACTAATAATTGATTAACTTCATATCCTAACCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS CCA 72 bp | CTCCCACCGGGTCCCTCCCACAACACGTGGGAATTATaGGAGCTACAAGATGAGAGTTGGGTGGGGACACAG | + |
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Preference number: 6 (lower is better) Translates to: LPPGPSHNTWEL*ELQDESWVGTQ Trigger: CTGTGTCCCCACCCAACTCTCATCTTGTAGCTCCCATAATTCCCACGTGTTGTGGGAGGGACCCGGTGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS TCA 72 bp | AAAAGAGGTGGAGGAAGGCAAATTTGCTCTCTCTTCTaGAGCTGGGACATCCATCATCTGCTCCTGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: KRGGGRQICSLF*SWDIHHLLLPL Trigger: CAAGGGCAGGAGCAGATGATGGATGTCCCAGCTTCAGAAGAGAGAGCAAATTTGCCTTCCTCCACCTCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | CTCTTCACCAATCTTCATAGGGCCTTGGCCACTTCTTaGGGGCCCTCCCACCAGATGATTAAAGGCAATACA | + |
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Preference number: 6 (lower is better) Translates to: LFTNLHRALATS*GPSHQMIKGNT Trigger: TGTATTGCCTTTAATCATCTGGTGGGAGGGCCCTCAAGAAGTGGCCAAGGCCCTATGAAGATTGGTGAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS CCA 72 bp | AGAAGGAAAGGAGGAGGAAGTTACATCTTATGTGGATaGCAGCAGGCAAAGAGAGAACTTGTGCAGGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: RRKGGGSYILCG*QQAKRELVQED Trigger: GTCCTCCTGCACAAGTTCTCTCTTTGCCTGCTGCCATCCACATAAGATGTAACTTCCTCCTCCTTTCCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS CAA 90 bp | TCATACCATATTTACAGGGTATGGTGGTTAACTTTATGTGTCCACTaGTCTCTTAGCCCATCCTGGGTTAAGGGATGCCCAGACAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SYHIYRVWWLTLCVH*SLSPSWVKGCPDSW Trigger: CCAGCTGTCTGGGCATCCCTTAACCCAGGATGGGCTAAGAGACAAGTGGACACATAAAGTTAACCACCATACCCTGTAAATATGGTATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | AGTAAGGTGGGTATATGGGAGATGAAACTCCCCCAGTaGTCAAAGCTGTTGGCATCCCTCTACCCAAATTTC | + |
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Preference number: 6 (lower is better) Translates to: SKVGIWEMKLPQ*SKLLASLYPNF Trigger: GAAATTTGGGTAGAGGGATGCCAACAGCTTTGATCACTGGGGGAGTTTCATCTCCCATATACCCACCTTACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS GCA 72 bp | ATACCAGCAGACACTCTTCAGCCCTTCAGCTTCACATaGAAGAATTACACTGGATTTCCTGGTTCTTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: IPADTLQPFSFT*KNYTGFPGSSA Trigger: AGCCGAAGAACCAGGAAATCCAGTGTAATTCTTGCATGTGAAGCTGAAGGGCTGAAGAGTGTCTGCTGGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS CAA 90 bp | ACACTGACACATCAGCACTCAGGAACAGAGAAAGGTTTATTCAATTaGACCAAAGCAAGAGGGCAGGAGAGACAGTCTCTCAAATCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TLTHQHSGTEKGLFN*TKARGQERQSLKSA Trigger: GGCAGATTTGAGAGACTGTCTCTCCTGCCCTCTTGCTTTGGTCAAATTGAATAAACCTTTCTCTGTTCCTGAGTGCTGATGTGTCAGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS CAA 90 bp | GAGGAAGTTACATCTTATGTGGATGGCAGCAGGCAAAGAGAGAACTaGTGCAGGAGGACTCCCGTTTTTAAAACCATCAGATCTCATGAG | + |
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Preference number: 6 (lower is better) Translates to: EEVTSYVDGSRQREN*CRRTPVFKTIRSHE Trigger: CTCATGAGATCTGATGGTTTTAAAAACGGGAGTCCTCCTGCACAAGTTCTCTCTTTGCCTGCTGCCATCCACATAAGATGTAACTTCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS GCA 72 bp | TGCAAGAATTACACTGGATTTCCTGGTTCTTCGGCTTaGAGGGGGCACATATTGGAACTTCTTGGCCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: CKNYTGFPGSSA*RGHILELLGLY Trigger: ATAAAGGCCAAGAAGTTCCAATATGTGCCCCCTGCAAGCCGAAGAACCAGGAAATCCAGTGTAATTCTTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS CAA 72 bp | ACATCTTATGTGGATGGCAGCAGGCAAAGAGAGAACTaGTGCAGGAGGACTCCCGTTTTTAAAACCATCAGA | + |
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Preference number: 6 (lower is better) Translates to: TSYVDGSRQREN*CRRTPVFKTIR Trigger: TCTGATGGTTTTAAAAACGGGAGTCCTCCTGCACAAGTTCTCTCTTTGCCTGCTGCCATCCACATAAGATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS CAA 72 bp | ATTTACAGGGTATGGTGGTTAACTTTATGTGTCCACTaGTCTCTTAGCCCATCCTGGGTTAAGGGATGCCCA | + |
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Preference number: 6 (lower is better) Translates to: IYRVWWLTLCVH*SLSPSWVKGCP Trigger: TGGGCATCCCTTAACCCAGGATGGGCTAAGAGACAAGTGGACACATAAAGTTAACCACCATACCCTGTAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | GATGTTACAGAATCTCCAAATTTAGGTCTGTGCACCTaGTGCATGGTAAGCCAAACACTGACACATCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: DVTESPNLGLCT*CMVSQTLTHQH Trigger: GTGCTGATGTGTCAGTGTTTGGCTTACCATGCATCAGGTGCACAGACCTAAATTTGGAGATTCTGTAACATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000608591.5 ENST00000609365.2 |
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| CDS CAA 90 bp | GGGTTTGATTCGAATGCTTCCAAACCACATTCCCTAAAGCATGCTTaGTGCAACACTAGGAGTTGGTGCAGCAAACAAAAACAAGGAATG | + |
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Preference number: 6 (lower is better) Translates to: GFDSNASKPHSLKHA*CNTRSWCSKQKQGM Trigger: CATTCCTTGTTTTTGTTTGCTGCACCAACTCCTAGTGTTGCACAAAGCATGCTTTAGGGAATGTGGTTTGGAAGCATTCGAATCAAACCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | CACTTACGAAAATTTAAAGAGAAGCAGTCTCAAATGTaGACTGAATGCCGTCCCATTACTCCCCCAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: HLRKFKEKQSQM*TECRPITPPNW Trigger: CCAGTTTGGGGGAGTAATGGGACGGCATTCAGTTCACATTTGAGACTGCTTCTCTTTAAATTTTCGTAAGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS CAA 72 bp | TCGAATGCTTCCAAACCACATTCCCTAAAGCATGCTTaGTGCAACACTAGGAGTTGGTGCAGCAAACAAAAA | + |
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Preference number: 6 (lower is better) Translates to: SNASKPHSLKHA*CNTRSWCSKQK Trigger: TTTTTGTTTGCTGCACCAACTCCTAGTGTTGCACAAAGCATGCTTTAGGGAATGTGGTTTGGAAGCATTCGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | TTTTCAGCACATATGATGGGGATAAGTCATCAGTTATaGCAGACAACTTCCGGAGTTACATCACCAATGTTC | + |
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Preference number: 6 (lower is better) Translates to: FSAHMMGISHQL*QTTSGVTSPMF Trigger: GAACATTGGTGATGTAACTCCGGAAGTTGTCTGTCATAACTGATGACTTATCCCCATCATATGTGCTGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | AATAGACTGGGTATCAAAAACCCATCCTCACTAATGTaGGTGGGCATCATTCAATTAACTGAGCATAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: NRLGIKNPSSLM*VGIIQLTEHRN Trigger: ATTCCTATGCTCAGTTAATTGAATGATGCCCACTCACATTAGTGAGGATGGGTTTTTGATACCCAGTCTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | GAGTCTGTGAGAGTATTTCTGGAAGAGATTAGCATTTaGATCAATAGACTGGGTATCAAAAACCCATCCTCA | + |
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Preference number: 6 (lower is better) Translates to: ESVRVFLEEISI*INRLGIKNPSS Trigger: TGAGGATGGGTTTTTGATACCCAGTCTATTGATTCAAATGCTAATCTCTTCCAGAAATACTCTCACAGACTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS CAA 90 bp | ACAACTTCCGGAGTTACATCACCAATGTTCATCTATCACTCACCTTaGCTTCAAACTTTATGCATCATATTCAAGTTAATTCCTATTGCA | + |
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Preference number: 6 (lower is better) Translates to: TTSGVTSPMFIYHSP*LQTLCIIFKLIPIA Trigger: TGCAATAGGAATTAACTTGAATATGATGCATAAAGTTTGAAGCAAAGGTGAGTGATAGATGAACATTGGTGATGTAACTCCGGAAGTTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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| CDS TCA 72 bp | AGACAGCTGGTAAAATATTATTTCTGGGAGAGTCTGTaGGAGTATTTCTGGAAGAGATTAGCATTTGAATCA | + |
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Preference number: 6 (lower is better) Translates to: RQLVKYYFWESL*EYFWKRLAFES Trigger: TGATTCAAATGCTAATCTCTTCCAGAAATACTCTCACAGACTCTCCCAGAAATAATATTTTACCAGCTGTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664668.1 |
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