Pregenerated sensors for APOC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000130208Ensembl transcript IDs: ENST00000586638.5, ENST00000588750.5, ENST00000588802.5, ENST00000589781.1, ENST00000590334.5, ENST00000592176.1, ENST00000592885.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCAGTGTGTTTCCAAACTCCTTCAGCTTATCCAAGGCACTGGAGACGTCTGGGCCCCTGGGCTGGGGCTaGGCCCACTTTCAAGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: SSVFPNSFSLSKALETSGPLGWG*AHFQGC Trigger: ACAGCCTTGAAAGTGGGCCCAGCCCCAGCCCAGGGG...CCCAGACGTCTCCAGTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000592176.1 |
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| CDS-3UTR TCA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGGCCGGAGGGGCACTCTaGATCCTTGCTGGAGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VGFLLVAPGATWRESSAQAGGAL*ILAGGL Trigger: AAGCCCTCCAGCAAGGATTCAGAGTGCCCCTCCGGC...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENST00000588750.5 ENST00000589781.1 ENST00000592885.5 |
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| CDS-3UTR TCA 90 bp | TGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGCCGGAGGGGCACTCTaGATCCTTGCTGGAGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: CRIFIGGTWGHMEGVLSTAGGAL*ILAGGL Trigger: AAGCCCTCCAGCAAGGATTCAGAGTGCCCCTCCGGC...TGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENST00000588750.5 ENST00000589781.1 ENST00000592885.5 |
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| CDS-3UTR TCA 90 bp | TTCTGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCGCCGGAGGGGCACTCTaGATCCTTGCTGGAGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: FCRIFIGGTWGHMEGVLSAGGAL*ILAGGL Trigger: AAGCCCTCCAGCAAGGATTCAGAGTGCCCCTCCGGC...GCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000592885.5 |
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| CDS-3UTR TCA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGGCCGAGCTCCCCGAGTaGGCAATCCCTGTTCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: VGFLLVAPGATWRESSAQAELPE*AIPVPF Trigger: AAAAGGAACAGGGATTGCTCACTCGGGGAGCTCGGC...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000588750.5 |
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| CDS-3UTR TCA 90 bp | GATGAGTTCCCGAGCCTTGTCCTCCAGTGTGTTTCCAAACTCCTTCAGCTTATCTGGCGCCTGCGGGACTaGGCCTGGGAGAACCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DEFPSLVLQCVSKLLQLIWRLRD*AWENLP Trigger: TGGAAGGTTCTCCCAGGCTCAGTCCCGCAGGCGCCA...GATAAGCTGAAGGAGTTTGGAAACACACTGGAGGACAAGGCTCGGGAACTCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592176.1 |
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| CDS-3UTR CCA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGGCTTATCCAAGGCACTaGAGACGTCTGGGGTCCCCT | + |
|
Preference number: 4 (lower is better) Translates to: VGFLLVAPGATWRESSAQAYPRH*RRLGSP Trigger: AGGGGACCCCAGACGTCTCCAGTGCCTTGGATAAGC...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 6 transcripts: ENST00000586638.5 ENST00000588750.5 ENST00000588802.5 ENST00000590334.5 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR CCA 90 bp | TCTGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCAGCTTATCCAAGGCACTaGAGACGTCTGGGGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: SVGFLLVAPGATWRESSAAYPRH*RRLGSP Trigger: AGGGGACCCCAGACGTCTCCAGTGCCTTGGATAAGC...TGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENST00000586638.5 ENST00000588802.5 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGTTTATTGGTGGCACCTaGGGCCACATGGAGGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: VGFLLVAPGATWRESSAQFIGGT*GHMEGV Trigger: GACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAA...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000586638.5 ENST00000588750.5 ENST00000588802.5 ENST00000589781.1 ENST00000590334.5 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGGAAAACCACTCCCCTTaGCTGGGCATTTGGCTCACG | + |
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Preference number: 4 (lower is better) Translates to: VGFLLVAPGATWRESSAQENHSP*LGIWLT Trigger: CGTGAGCCAAATGCCCAGCCAAGGGGAGTGGTTTTC...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000590334.5 |
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| CDS-3UTR CCA 90 bp | TTCTGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCTTTATTGGTGGCACCTaGGGCCACATGGAGGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: FCRIFIGGTWGHMEGVLSFIGGT*GHMEGV Trigger: GACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAA...GCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000586638.5 ENST00000588802.5 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR CCA 90 bp | TGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACATTTATTGGTGGCACCTaGGGCCACATGGAGGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: CRIFIGGTWGHMEGVLSTFIGGT*GHMEGV Trigger: GACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAA...TGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000586638.5 ENST00000588750.5 ENST00000588802.5 ENST00000589781.1 ENST00000590334.5 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR TCA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGACCTGGGCAACATGGTaGAATGTCATCTTCACGCAT | + |
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Preference number: 4 (lower is better) Translates to: VGFLLVAPGATWRESSAQTWATW*NVIFTH Trigger: ATGCGTGAAGATGACATTTCACCATGTTGCCCAGGT...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000590334.5 |
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| CDS-3UTR GCA 90 bp | TGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACATCATCTTGGACCATCTaGCAGGGCTCCACCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: CRIFIGGTWGHMEGVLSTSSWTI*QGSTQK Trigger: TTTTTGGGTGGAGCCCTGGCAGATGGTCCAAGATGA...TGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000592885.5 |
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| CDS-3UTR TCA 90 bp | TGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAAAATTCCTCAGACGCTaGGTTAAGGAAGGGGTTTAT | + |
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Preference number: 4 (lower is better) Translates to: CRIFIGGTWGHMEGVLSTKFLRR*VKEGVY Trigger: ATAAACCCCTTCCTTAACTCAGCGTCTGAGGAATTT...TGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENST00000588750.5 ENST00000588802.5 |
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| CDS-3UTR CAA 90 bp | CTTGTCCTCCAGTGTGTTTCCAAACTCCTTCAGCTTATCCAAGGCACTGGAGACCTCTCCTGCGCAGATTaGGCGCCTGCGGGACTGAGC | + |
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Preference number: 5 (lower is better) Translates to: LVLQCVSKLLQLIQGTGDLSCAD*APAGLS Trigger: GCTCAGTCCCGCAGGCGCCAAATCTGCGCAGGAGAG...GTCTCCAGTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGAGGACAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000592176.1 |
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| CDS-3UTR CAA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGTCTGTAGGATTTTTATaGGTGGCACCTGGGGCCACA | + |
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Preference number: 5 (lower is better) Translates to: VGFLLVAPGATWRESSAQSVGFL*VAPGAT Trigger: TGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGA...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 5 transcripts: ENST00000586638.5 ENST00000588802.5 ENST00000589781.1 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR CAA 90 bp | TTCTGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCTCTGTAGGATTTTTATaGGTGGCACCTGGGGCCACA | + |
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Preference number: 5 (lower is better) Translates to: FCRIFIGGTWGHMEGVLSSVGFL*VAPGAT Trigger: TGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGA...GCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 4 transcripts: ENST00000586638.5 ENST00000588802.5 ENST00000592176.1 ENST00000592885.5 |
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| CDS-3UTR CAA 90 bp | TGTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACACTGAAAACCACTCCCTaGAGATCTAGCTGTGTGACC | + |
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Preference number: 5 (lower is better) Translates to: CRIFIGGTWGHMEGVLSTLKTTP*RSSCVT Trigger: GGTCACACAGCTAGATCTCAAGGGAGTGGTTTTCAG...TGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000592885.5 |
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| CDS-3UTR CAA 90 bp | GCTGATGAGTTCCCGAGCCTTGTCCTCCAGTGTGTTTCCAAACTCCTTCAGCTTTCTGTAGGATTTTTATaGGTGGCACCTGGGGCCACA | + |
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Preference number: 5 (lower is better) Translates to: ADEFPSLVLQCVSKLLQLSVGFL*VAPGAT Trigger: TGTGGCCCCAGGTGCCACCAATAAAAATCCTACAGA...AAGCTGAAGGAGTTTGGAAACACACTGGAGGACAAGGCTCGGGAACTCATCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000592176.1 |
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| CDS-3UTR CAA 90 bp | GTAGGATTTTTATTGGTGGCACCTGGGGCCACATGGAGGGAGTCCTCAGCACAGTCATCTTCACGCATCTaGGCAGAAAGTTCACTCTGT | + |
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Preference number: 5 (lower is better) Translates to: VGFLLVAPGATWRESSAQSSSRI*AESSLC Trigger: ACAGAGTGAACTTTCTGCCAAGATGCGTGAAGATGA...CTGTGCTGAGGACTCCCTCCATGTGGCCCCAGGTGCCACCAATAAAAATCCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000590334.5 |
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