Pregenerated sensors for APOBEC3G (Homo sapiens)
Ensembl gene IDs: ENSG00000239713Ensembl transcript IDs: ENST00000407997.4, ENST00000461827.5, ENST00000480000.5, ENST00000481958.1, ENST00000486357.1, ENST00000494150.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TATTCCTCTACCTACAAAACCGATTCAAATTGTCGCTaGATTAGTAGGTTTGAAACTTTTCTGTGTATTGAG | + |
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Preference number: 3 (lower is better) Translates to: YSSTYKTDSNCR*ISRFETFLCIE Trigger: CTCAATACACAGAAAAGTTTCAAACCTACTAATCCAGCGACAATTTGAATCGGTTTTGTAGGTAGAGGAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000407997.4 |
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| CDS CCA 90 bp | GATAGGACTCTGCAGAGCCCAGCCTGGAACTGGGAAGATTCTGGCTaGGGAAGCCACAGGCATCAGCTGAGGGGTCATGTCCGGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: DRTLQSPAWNWEDSG*GSHRHQLRGHVRTP Trigger: TGGGGTCCGGACATGACCCCTCAGCTGATGCCTGTGGCTTCCCCAGCCAGAATCTTCCCAGTTCCAGGCTGGGCTCTGCAGAGTCCTATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS CCA 90 bp | GAGGATGCCACCTTTGATAGGACTCTGCAGAGCCCAGCCTGGAACTaGGAAGATTCTGGCTGGGGAAGCCACAGGCATCAGCTGAGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: EDATFDRTLQSPAWN*EDSGWGSHRHQLRG Trigger: ACCCCTCAGCTGATGCCTGTGGCTTCCCCAGCCAGAATCTTCCCAGTTCCAGGCTGGGCTCTGCAGAGTCCTATCAAAGGTGGCATCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS CCA 90 bp | TGGCAACAACCTTCACCCCCACGTGACTGTGCAGCTCGCAGGCCCTaGAAAGTTGCTGGTGCATTGACAGGGGACTTCCCAGAGTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: WQQPSPPRDCAARRP*KVAGALTGDFPESR Trigger: TCTGGACTCTGGGAAGTCCCCTGTCAATGCACCAGCAACTTTCCAGGGCCTGCGAGCTGCACAGTCACGTGGGGGTGAAGGTTGTTGCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000494150.1 |
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| CDS GCA 90 bp | CCACCTTGGACTTGCAGCCTCCAGATGTGTGAGAAAATAAATGCCTaGCCTGTGGGCACCCAGCCCGGCCATCTTCTATGGCAGCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: PPWTCSLQMCEKINA*PVGTQPGHLLWQPK Trigger: CTTCGGCTGCCATAGAAGATGGCCGGGCTGGGTGCCCACAGGGCAGGCATTTATTTTCTCACACATCTGGAGGCTGCAAGTCCAAGGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000481958.1 ENST00000494150.1 |
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| CDS CCA 90 bp | GCAGAGGCATTTCCAAACCAGAAACACCAGATCTTCACCCTGGAGTaGACAGAGGGGAGGATGCCACCTTTGATAGGACTCTGCAGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: AEAFPNQKHQIFTLE*TEGRMPPLIGLCRA Trigger: GGCTCTGCAGAGTCCTATCAAAGGTGGCATCCTCCCCTCTGTCCACTCCAGGGTGAAGATCTGGTGTTTCTGGTTTGGAAATGCCTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS GCA 72 bp | GAAAGGCCAGAGAGGACAGGGCCGGAAGGGACCCCCTaGCAGCCAGGAGGAGCGACTGCAGAAGACACAACC | + |
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Preference number: 6 (lower is better) Translates to: ERPERTGPEGTP*QPGGATAEDTT Trigger: GGTTGTGTCTTCTGCAGTCGCTCCTCCTGGCTGGCAGGGGGTCCCTTCCGGCCCTGTCCTCTCTGGCCTTTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000481958.1 ENST00000494150.1 |
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| CDS CCA 72 bp | CTGCAGAGCCCAGCCTGGAACTGGGAAGATTCTGGCTaGGGAAGCCACAGGCATCAGCTGAGGGGTCATGTC | + |
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Preference number: 6 (lower is better) Translates to: LQSPAWNWEDSG*GSHRHQLRGHV Trigger: GACATGACCCCTCAGCTGATGCCTGTGGCTTCCCCAGCCAGAATCTTCCCAGTTCCAGGCTGGGCTCTGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS CCA 72 bp | GACTCTGCAGAGCCCAGCCTGGAACTGGGAAGATTCTaGCTGGGGAAGCCACAGGCATCAGCTGAGGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: DSAEPSLELGRF*LGKPQASAEGS Trigger: TGACCCCTCAGCTGATGCCTGTGGCTTCCCCAGCCAGAATCTTCCCAGTTCCAGGCTGGGCTCTGCAGAGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS CCA 72 bp | CCTTCACCCCCACGTGACTGTGCAGCTCGCAGGCCCTaGAAAGTTGCTGGTGCATTGACAGGGGACTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PSPPRDCAARRP*KVAGALTGDFP Trigger: TGGGAAGTCCCCTGTCAATGCACCAGCAACTTTCCAGGGCCTGCGAGCTGCACAGTCACGTGGGGGTGAAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000494150.1 |
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| CDS TCA 72 bp | CACCCCTCCACCTTGGACTTGCAGCCTCCAGATGTGTaGGAAAATAAATGCCTGCCCTGTGGGCACCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: HPSTLDLQPPDV*ENKCLPCGHPA Trigger: GGCTGGGTGCCCACAGGGCAGGCATTTATTTTCTCACACATCTGGAGGCTGCAAGTCCAAGGTGGAGGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000481958.1 ENST00000494150.1 |
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| CDS CAA 72 bp | CCTTCGGGTCCTCGGCCAGGAACGTGGCCATATCCCTaGTACACTTTGTGCAGGGGCTCCAGGATATGTACC | + |
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Preference number: 6 (lower is better) Translates to: PSGPRPGTWPYP*YTLCRGSRICT Trigger: GGTACATATCCTGGAGCCCCTGCACAAAGTGTACAAGGGATATGGCCACGTTCCTGGCCGAGGACCCGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000407997.4 ENST00000461827.5 ENST00000480000.5 ENST00000481958.1 ENST00000486357.1 ENST00000494150.1 |
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| CDS GCA 72 bp | TGGACAGAGGGGAGGATGCCACCTTTGATAGGACTCTaGAGAGCCCAGCCTGGAACTGGGAAGATTCTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: WTEGRMPPLIGL*RAQPGTGKILA Trigger: AGCCAGAATCTTCCCAGTTCCAGGCTGGGCTCTGCAGAGTCCTATCAAAGGTGGCATCCTCCCCTCTGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS CCA 72 bp | ACCTTTGATAGGACTCTGCAGAGCCCAGCCTGGAACTaGGAAGATTCTGGCTGGGGAAGCCACAGGCATCAG | + |
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Preference number: 6 (lower is better) Translates to: TFDRTLQSPAWN*EDSGWGSHRHQ Trigger: CTGATGCCTGTGGCTTCCCCAGCCAGAATCTTCCCAGTTCCAGGCTGGGCTCTGCAGAGTCCTATCAAAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS GCA 72 bp | ACTTGCAGCCTCCAGATGTGTGAGAAAATAAATGCCTaGCCTGTGGGCACCCAGCCCGGCCATCTTCTATGG | + |
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Preference number: 6 (lower is better) Translates to: TCSLQMCEKINA*PVGTQPGHLLW Trigger: CCATAGAAGATGGCCGGGCTGGGTGCCCACAGGGCAGGCATTTATTTTCTCACACATCTGGAGGCTGCAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000481958.1 ENST00000494150.1 |
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| CDS CCA 72 bp | TTTCCAAACCAGAAACACCAGATCTTCACCCTGGAGTaGACAGAGGGGAGGATGCCACCTTTGATAGGACTC | + |
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Preference number: 6 (lower is better) Translates to: FPNQKHQIFTLE*TEGRMPPLIGL Trigger: GAGTCCTATCAAAGGTGGCATCCTCCCCTCTGTCCACTCCAGGGTGAAGATCTGGTGTTTCTGGTTTGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481958.1 |
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| CDS TCA 72 bp | TACGTGACCCACGCAGCTCATTTCAAAGACTCGGTGTaGCAAGAAAAAGAAACTTCATTATCTTGTCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: YVTHAAHFKDSV*QEKETSLSCQE Trigger: TTCTTGACAAGATAATGAAGTTTCTTTTTCTTGTCACACCGAGTCTTTGAAATGAGCTGCGTGGGTCACGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000494150.1 |
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