Pregenerated sensors for APOBEC3D (Homo sapiens)
Ensembl gene IDs: ENSG00000243811Ensembl transcript IDs: ENST00000216099.13, ENST00000427494.6
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCATCTACAAGAAGAGCCTaGGAGAGCGGGGAGGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: LEFCGAISVYSSLHLPGSSTRRA*ESGEEV Trigger: CACCTCCTCCCCGCTCTCCCAGGCTCTTCTTGTAGA...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCTGCGGCCGAGCCGGGTaGCTCACGCCCGTAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: RLKQSSHFILPSSLNYRCCGRAG*LTPVIP Trigger: TGGGATTACGGGCGTGAGCCACCCGGCTCGGCCGCA...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR TCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAGATGGGCAGATCACCTaGGGTCAGGAGTTCAAGACC | + |
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Preference number: 2 (lower is better) Translates to: LEFCGAISVYSSLHLPGSDGQIT*GQEFKT Trigger: GGTCTTGAACTCCTGACCTCAGGTGATCTGCCCATC...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAACAGGACTGGGGAGGTaGATGGAGAGCCTCTACAAG | + |
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Preference number: 2 (lower is better) Translates to: LEFCGAISVYSSLHLPGSTGLGR*MESLYK Trigger: CTTGTAGAGGCTCTCCATCCACCTCCCCAGTCCTGT...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACTGAGATCCAGCCATTaGACTCTAGTCTGGGCGACA | + |
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Preference number: 2 (lower is better) Translates to: LEFCGAISVYSSLHLPGSLRSSH*TLVWAT Trigger: TGTCGCCCAGACTAGAGTGCAATGGCTGGATCTCAG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR TCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCTGCCTCCGAAAGGCGTaGGTCACCAGGGCCAGACTA | + |
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Preference number: 2 (lower is better) Translates to: RLKQSSHFILPSSLNYRCCLRKA*VTRARL Trigger: TAGTCTGGCCCTGGTGACTCACGCCTTTCGGAGGCA...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAAGCTTAAACTACAGGTaGATGCCACCACATCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: LEFCGAISVYSSLHLPGSSLNYR*MPPHLA Trigger: AGCCAGATGTGGTGGCATGCACCTGTAGTTTAAGCT...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCGTAATCCCAGCACTTTaGGAGACAGAGATGGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: KLEFCGAISVYSSLHLPGVIPAL*ETEMGR Trigger: TCTGCCCATCTCTGTCTCCCAAAGTGCTGGGATTAC...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCGAGTTTAATAAGATTTaGTTGTGCGGCCGAGCCGGG | + |
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Preference number: 2 (lower is better) Translates to: KLEFCGAISVYSSLHLPGEFNKI*LCGRAG Trigger: CCCGGCTCGGCCGCACAACCAAATCTTATTAAACTC...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCCTGGTCTCAAACTTCTaGGCTCAAGCGATTCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: KLEFCGAISVYSSLHLPGLVSNF*AQAILP Trigger: TGGGAGAATCGCTTGAGCCCAGAAGTTTGAGACCAG...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR GCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCAGCTTAAACTACAGGTaGATGCCACCACATCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: KLEFCGAISVYSSLHLPGSLNYR*MPPHLA Trigger: AGCCAGATGTGGTGGCATGCACCTGTAGTTTAAGCT...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCGAGTTTAATAAGATTTaGTTGTGCGGCCGAGCCGGG | + |
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Preference number: 2 (lower is better) Translates to: RLKQSSHFILPSSLNYRCEFNKI*LCGRAG Trigger: CCCGGCTCGGCCGCACAACCAAATCTTATTAAACTC...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCTGGTCTCAAACTTCTaGGCTCAAGCGATTCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: RLKQSSHFILPSSLNYRCLVSNF*AQAILP Trigger: TGGGAGAATCGCTTGAGCCCAGAAGTTTGAGACCAG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCAAAATTAGCTGGGCGTaGTGGCAGGCATCTGTAATC | + |
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Preference number: 2 (lower is better) Translates to: RLKQSSHFILPSSLNYRCKISWA*WQASVI Trigger: GATTACAGATGCCTGCCACCACGCCCAGCTAATTTT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CAA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCCGTAATCCCAGCACTTaGGGAGACAGAGATGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: KLEFCGAISVYSSLHLPGRNPST*GDRDGQ Trigger: CTGCCCATCTCTGTCTCCCAAAGTGCTGGGATTACG...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CAA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCGCTGAGATCCAGCCATaGCACTCTAGTCTGGGCGAC | + |
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Preference number: 3 (lower is better) Translates to: RLKQSSHFILPSSLNYRCAEIQP*HSSLGD Trigger: GTCGCCCAGACTAGAGTGCAATGGCTGGATCTCAGC...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CAA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCGTAATCCCAGCACTTaGGGAGACAGAGATGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: RLKQSSHFILPSSLNYRCRNPST*GDRDGQ Trigger: CTGCCCATCTCTGTCTCCCAAAGTGCTGGGATTACG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CAA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCAGACAGGAGAATCACTaGAACCCAGTAAGCAGAGTT | + |
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Preference number: 3 (lower is better) Translates to: RLKQSSHFILPSSLNYRCRQENH*NPVSRV Trigger: AACTCTGCTTACTGGGTTCAAGTGATTCTCCTGTCT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR-3UTR CAA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCAGGGCCAGACTAGATaGAGTTTAATAAGATTTGGT | + |
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Preference number: 3 (lower is better) Translates to: RLKQSSHFILPSSLNYRCQGQTR*SLIRFG Trigger: ACCAAATCTTATTAAACTCAATCTAGTCTGGCCCTG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR TCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACAGCCCTCCTTAAAGTaGCCTCCCGGCCGGGCACGG | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSQPSLK*PPGRAR Trigger: CCGTGCCCGGCCGGGAGGTCACTTTAAGGAGGGCTG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCATGCGGCCGAGCCGGGTaGCTCACGCCCGTAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSCGRAG*LTPVIP Trigger: TGGGATTACGGGCGTGAGCCACCCGGCTCGGCCGCA...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR TCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCCAGCCCTCCTTAAAGTaGCCTCCCGGCCGGGCACGG | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGQPSLK*PPGRAR Trigger: CCGTGCCCGGCCGGGAGGTCACTTTAAGGAGGGCTG...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACGGGCCCCTGCCTTATaGAGCCTGAGGAGCACCCAC | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSRAPAL*SLRSTH Trigger: GTGGGTGCTCCTCAGGCTGCATAAGGCAGGGGCCCG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTGCGGCCGAGCCGGGTaGCTCACGCCCGTAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGCGRAG*LTPVIP Trigger: TGGGATTACGGGCGTGAGCCACCCGGCTCGGCCGCA...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR TCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCATGCCTCCGAAAGGCGTaGGTCACCAGGGCCAGACTA | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSCLRKA*VTRARL Trigger: TAGTCTGGCCCTGGTGACTCACGCCTTTCGGAGGCA...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACCAAGTTCCTGCCACTaGACTCCAGCCTGGGTGAGA | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSPSSCH*TPAWVR Trigger: TCTCACCCAGGCTGGAGTGCAGTGGCAGGAACTTGG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAAGTGAGCCAAGTTCCTaGCACTGCACTCCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSSEPSS*HCTPAW Trigger: CCAGGCTGGAGTGCAGTGGCAGGAACTTGGCTCACT...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCCTTCACACGGGCCCCTaGCTTATGCAGCCTGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGLHTGP*LMQPEE Trigger: CTCCTCAGGCTGCATAAGGCAGGGGCCCGTGTGAAG...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR TCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAGGCAGGAGAATCACTTaGACCTGGGAAGCGGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSGRRIT*TWEAEV Trigger: AACCTCCGCTTCCCAGGTTCAAGTGATTCTCCTGCC...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR TCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCGGCAGGAGAATCACTTaGACCTGGGAAGCGGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGGRRIT*TWEAEV Trigger: AACCTCCGCTTCCCAGGTTCAAGTGATTCTCCTGCC...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR TCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCGATGGGCAGATCACCTaGGGTCAGGAGTTCAAGACC | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGDGQIT*GQEFKT Trigger: GGTCTTGAACTCCTGACCTCAGGTGATCTGCCCATC...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCACAGGACTGGGGAGGTaGATGGAGAGCCTCTACAAG | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGTGLGR*MESLYK Trigger: CTTGTAGAGGCTCTCCATCCACCTCCCCAGTCCTGT...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR TCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCTGCCTTATGCAGCCTaGGGAGCACCCACCGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCLPYAA*GAPTAN Trigger: ATTGGCGGTGGGTGCTCCTCAGGCTGCATAAGGCAG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR TCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACTTCCGGAAGACAGCTaGGTGGTGCTTTGTAACTTC | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSLPEDS*VVLCNF Trigger: GAAGTTACAAAGCACCACTCAGCTGTCTTCCGGAAG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCGATTCGACTGACGTTTaGGTAGTACCGGGCCTCGAA | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGDSTDV*VVPGLE Trigger: TTCGAGGCCCGGTACTACCCAAACGTCAGTCGAATC...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAGCTCAGCCAAGAATTTaGTCACCTTCACCACACAGG | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSAQPRI*SPSPHR Trigger: CCTGTGTGGTGAAGGTGACCAAATTCTTGGCTGAGC...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR CCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAGTAATCCCAGCACTTTaGGAGACAGAGATGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSVIPAL*ETEMGR Trigger: TCTGCCCATCTCTGTCTCCCAAAGTGCTGGGATTAC...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACTGGTCTCAAACTTCTaGGCTCAAGCGATTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSLVSNF*AQAILP Trigger: TGGGAGAATCGCTTGAGCCCAGAAGTTTGAGACCAG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCCAAGTTCCTGCCACTaGACTCCAGCCTGGGTGAGA | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCPSSCH*TPAWVR Trigger: TCTCACCCAGGCTGGAGTGCAGTGGCAGGAACTTGG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCAGTGAGCCAAGTTCCTaGCACTGCACTCCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCSEPSS*HCTPAW Trigger: CCAGGCTGGAGTGCAGTGGCAGGAACTTGGCTCACT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCTCTACAAGAAGAGCCTaGGAGAGCGGGGAGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCSTRRA*ESGEEV Trigger: CACCTCCTCCCCGCTCTCCCAGGCTCTTCTTGTAGA...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAAGGGTCTTGATCTGTTaGTCAAACTGGAGTTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: LEFCGAISVYSSLHLPGSRVLIC*SNWSSV Trigger: CACAGAACTCCAGTTTGAGCAACAGATCAAGACCCT...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCACAGGACTGGGGAGGTaGATGGAGAGCCTCTACAAG | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCTGLGR*MESLYK Trigger: CTTGTAGAGGCTCTCCATCCACCTCCCCAGTCCTGT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCAAAATTAGCTGGGCGTaGTGGCAGGCATCTGTAATC | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGKISWA*WQASVI Trigger: GATTACAGATGCCTGCCACCACGCCCAGCTAATTTT...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCATCTGTTGCTCAAACTaGAGTTCTGTGGCGCGATCT | + |
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Preference number: 4 (lower is better) Translates to: KLEFCGAISVYSSLHLPGICCSN*SSVARS Trigger: AGATCGCGCCACAGAACTCCAGTTTGAGCAACAGAT...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| 3UTR CAA 72 bp | CCTCCGAAAGGCGTGAGTCACCAGGGCCAGACTAGATaGAGTTTAATAAGATTTGGTTGTGCGGCCGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: PPKGVSHQGQTR*SLIRFGCAAEP Trigger: CGGCTCGGCCGCACAACCAAATCTTATTAAACTCAATCTAGTCTGGCCCTGGTGACTCACGCCTTTCGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCTGAGATCCAGCCATTaGACTCTAGTCTGGGCGACA | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCLRSSH*TLVWAT Trigger: TGTCGCCCAGACTAGAGTGCAATGGCTGGATCTCAG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCGATTCGACTGACGTTTaGGTAGTACCGGGCCTCGAA | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCDSTDV*VVPGLE Trigger: TTCGAGGCCCGGTACTACCCAAACGTCAGTCGAATC...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCGTAATCCCAGCACTTTaGGAGACAGAGATGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCVIPAL*ETEMGR Trigger: TCTGCCCATCTCTGTCTCCCAAAGTGCTGGGATTAC...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCAGCTTAAACTACAGGTaGATGCCACCACATCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCSLNYR*MPPHLA Trigger: AGCCAGATGTGGTGGCATGCACCTGTAGTTTAAGCT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCCGGAAGACAGCTGAGTaGTGCTTTGTAACTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCRKTAE*CFVTSM Trigger: CATGGAAGTTACAAAGCACCACTCAGCTGTCTTCCG...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR CCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCATCTGTTGCTCAAACTaGAGTTCTGTGGCGCGATCT | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCICCSN*SSVARS Trigger: AGATCGCGCCACAGAACTCCAGTTTGAGCAACAGAT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR GCA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCAGGGTCTTGATCTGTTaGTCAAACTGGAGTTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: RLKQSSHFILPSSLNYRCRVLIC*SNWSSV Trigger: CACAGAACTCCAGTTTGAGCAACAGATCAAGACCCT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCGCTGAGATCCAGCCATaGCACTCTAGTCTGGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: KLEFCGAISVYSSLHLPGAEIQP*HSSLGD Trigger: GTCGCCCAGACTAGAGTGCAATGGCTGGATCTCAGC...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCACGTAATCCCAGCACTTaGGGAGACAGAGATGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: LEFCGAISVYSSLHLPGSRNPST*GDRDGQ Trigger: CTGCCCATCTCTGTCTCCCAAAGTGCTGGGATTACG...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCAGGCAGGAGAATCACTaGAACCTGGGAAGCGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: KLEFCGAISVYSSLHLPGRQENH*NLGSGG Trigger: ACCTCCGCTTCCCAGGTTCAAGTGATTCTCCTGCCT...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCATGCTCAGCCAAGAATTaGGTCACCTTCACCACACAG | + |
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Preference number: 5 (lower is better) Translates to: LEFCGAISVYSSLHLPGSCSAKN*VTFTTQ Trigger: CTGTGTGGTGAAGGTGACCAAATTCTTGGCTGAGCA...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216099.13 |
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| CDS-3UTR CAA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCATTTTCAGGCAGGGTCTaGATCTGTTGCTCAAACTGG | + |
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Preference number: 5 (lower is better) Translates to: LEFCGAISVYSSLHLPGSFSGRV*ICCSNW Trigger: CCAGTTTGAGCAACAGATCAAGACCCTGCCTGAAAA...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCAGGCAGGAGAATCACTaGAACCTGGGAAGCGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: RLKQSSHFILPSSLNYRCRQENH*NLGSGG Trigger: ACCTCCGCTTCCCAGGTTCAAGTGATTCTCCTGCCT...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | CTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCTCAAGACAGGAGAATCACTaGAACCCAGTAAGCAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: LEFCGAISVYSSLHLPGSRQENH*NPVSRV Trigger: AACTCTGCTTACTGGGTTCAAGTGATTCTCCTGTCT...TGAGCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | AAACTGGAGTTCTGTGGCGCGATCTCAGTTTACTCCAGCCTCCACCTCCCCGGCCAGGGCCAGACTAGATaGAGTTTAATAAGATTTGGT | + |
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Preference number: 5 (lower is better) Translates to: KLEFCGAISVYSSLHLPGQGQTR*SLIRFG Trigger: ACCAAATCTTATTAAACTCAATCTAGTCTGGCCCTG...GCCGGGGAGGTGGAGGCTGGAGTAAACTGAGATCGCGCCACAGAACTCCAGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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| CDS-3UTR CAA 90 bp | CGGCTCAAGCAGTCCTCCCACTTCATCCTCCCAAGTAGCTTAAACTACAGGTGCTTTTCAGGCAGGGTCTaGATCTGTTGCTCAAACTGG | + |
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Preference number: 5 (lower is better) Translates to: RLKQSSHFILPSSLNYRCFSGRV*ICCSNW Trigger: CCAGTTTGAGCAACAGATCAAGACCCTGCCTGAAAA...GCACCTGTAGTTTAAGCTACTTGGGAGGATGAAGTGGGAGGACTGCTTGAGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000216099.13 ENST00000427494.6 |
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