RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ANKS4B (Homo sapiens)

Ensembl gene IDs: ENSG00000175311

Ensembl transcript IDs: ENST00000311620.7, ENST00000639229.2

Found 295 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGCTGAAAGCCCAAGATCAAGGTGATTGCAGGGTTGGTTTCTCCTaGGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGT +
Preference number: 1 (lower is better)
Translates to: GLKAQDQGDCRVGFS*GPLLGLQTATFSLC
Trigger: ACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAACCAACCCTGCAATCACCTTGATCTTGGGCTTTCAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR TCA 90 bp AAAGGGATGAGAGTCAATGTTCAAGTTCATTTCTACCAACCTGAGTaGTGGCTCTCTTGCTATGATGTAGTTACAGCAGGGGGTGGAGCA +
Preference number: 1 (lower is better)
Translates to: KGMRVNVQVHFYQPE*WLSCYDVVTAGGGA
Trigger: TGCTCCACCCCCTGCTGTAACTACATCATAGCAAGAGAGCCATCACTCAGGTTGGTAGAAATGAACTTGAACATTGACTCTCATCCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR TCA 90 bp AGTTTCTATCGTGGAACCTACACATATTCAGATATGCGGCAATGGTaGCAGACAACAGTAAATAAACCATGTGTACATAATAAGCATGAA +
Preference number: 1 (lower is better)
Translates to: SFYRGTYTYSDMRQW*QTTVNKPCVHNKHE
Trigger: TTCATGCTTATTATGTACACATGGTTTATTTACTGTTGTCTGTCACCATTGCCGCATATCTGAATATGTGTAGGTTCCACGATAGAAACT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCGGGTGCCGCCTGGAGTaGTGCCAGCGGGCCACAGCA +
Preference number: 2 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVGCRLE*CQRATA
Trigger: TGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCACCC...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTGCCGCCTGGAGTGCTaGCAGCGGGCCACAGCATCA +
Preference number: 2 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVCRLEC*QRATAS
Trigger: TGATGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCCAGTGGTCTGGCATTaGGTAAAGAGGGGGTGCCGC +
Preference number: 2 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVPVVWH*VKRGCR
Trigger: GCGGCACCCCCTCTTTACCCAATGCCAGACCACTGG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCAGGAGGCTGAGGCATaGAAAGTGCTCGAACCTGGG +
Preference number: 2 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVQEAEA*KVLEPG
Trigger: CCCAGGTTCGAGCACTTTTCATGCCTCAGCCTCCTG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCGTGGCCTCTCTGTGTaGCTTCCACCTAAGTGTCTC +
Preference number: 2 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVRGLSV*LPPKCL
Trigger: GAGACACTTAGGTGGAAGGCACACAGAGAGGCCACG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTCCCAGAGTAAAGTTTaGGTCTCTCTCTCAGGTAGG +
Preference number: 2 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVSQSKV*VSLSGR
Trigger: CCTACCTGAGAGAGAGACCCAAACTTTACTCTGGGA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTGCCGCCTGGAGTGCTaGCAGCGGGCCACAGCATCA +
Preference number: 2 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHCRLEC*QRATAS
Trigger: TGATGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAGAGGGGGTGCCGCCTaGAGTGCTGCCAGCGGGCCA +
Preference number: 2 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSRGGAA*SAASGP
Trigger: TGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGAGGGGGTGCCGCCTaGAGTGCTGCCAGCGGGCCA +
Preference number: 2 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGRGGAA*SAASGP
Trigger: TGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTGGGTAAAGAGGGGGTaGCGCCTGGAGTGCTGCCAG +
Preference number: 2 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHWVKRG*RLECCQ
Trigger: CTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAGGGTTGGTTTCTCCTaGGGCCCCCTCCTCGGCTTG +
Preference number: 2 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSRVGFS*GPLLGL
Trigger: CAAGCCGAGGAGGGGGCCTCAGGAGAAACCAACCCT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACCAGTGGTCTGGCATTaGGTAAAGAGGGGGTGCCGC +
Preference number: 2 (lower is better)
Translates to: QERTLVSTTRQSHRSQERPVVWH*VKRGCR
Trigger: GCGGCACCCCCTCTTTACCCAATGCCAGACCACTGG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAGGGTTGGTTTCTCCTaGGGCCCCCTCCTCGGCTTG +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHRVGFS*GPLLGL
Trigger: CAAGCCGAGGAGGGGGCCTCAGGAGAAACCAACCCT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAACAGCATCACCCCAATaGTCCAGGCCAAAACTCTCC +
Preference number: 2 (lower is better)
Translates to: VKGLDAFKLGIKPQARKETASPQ*SRPKLS
Trigger: GGAGAGTTTTGGCCTGGAGCATTGGGGTGATGCTGT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGGTAGGCATTTCCGATaGCCTAGAATCCATTCCCAG +
Preference number: 2 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEGRHFR*PRIHSQ
Trigger: CTGGGAATGGATTCTAGGGCATCGGAAATGCCTACC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCTGAGGCATGAAAAGTaGTCGAACCTGGGAGGCGGG +
Preference number: 2 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLLRHEK*SNLGGG
Trigger: CCCGCCTCCCAGGTTCGAGCACTTTTCATGCCTCAG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAGTTTGAGACCAGCCTaGGCAATGTGGCAAGACCCC +
Preference number: 2 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSLRPA*AMWQDP
Trigger: GGGGTCTTGCCACATTGCCCAGGCTGGTCTCAAACT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGTTTGAGACCAGCCTaGGCAATGTGGCAAGACCCC +
Preference number: 2 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGSLRPA*AMWQDP
Trigger: GGGGTCTTGCCACATTGCCCAGGCTGGTCTCAAACT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATGGGAGGAGATCATTTaGGCCCAGGAGGTTGAGAAT +
Preference number: 2 (lower is better)
Translates to: QERTLVSTTRQSHRSQERWEEII*AQEVEN
Trigger: ATTCTCAACCTCCTGGGCTCAAATGATCTCCTCCCA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGCTACTTGGGAGGCTaGGGTGGGAGGAGATCATTT +
Preference number: 2 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGSYLGG*GGRRSF
Trigger: AAATGATCTCCTCCCACCTCAGCCTCCCAAGTAGCT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCTGGGTAAAGAGGGGGTaGCGCCTGGAGTGCTGCCAG +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPWVKRG*RLECCQ
Trigger: CTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCA...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCGTGGCCTCTCTGTGTaGCTTCCACCTAAGTGTCTC +
Preference number: 2 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLRGLSV*LPPKCL
Trigger: GAGACACTTAGGTGGAAGGCACACAGAGAGGCCACG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGTGCTCGAACCTaGGAGGCGGGGGTTGCAGTG +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHKSART*EAGVAV
Trigger: CACTGCAACCCCCGCCTCCCAGGTTCGAGCACTTTT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTGGGAGGAGATCATTTaGGCCCAGGAGGTTGAGAAT +
Preference number: 2 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSWEEII*AQEVEN
Trigger: ATTCTCAACCTCCTGGGCTCAAATGATCTCCTCCCA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCCATTCCCAGTGGTCTaGCATTGGGTAAAGAGGGGG +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHPFPVV*HWVKRG
Trigger: CCCCCTCTTTACCCAATGCCAGACCACTGGGAATGG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATATGCCACAGACTGGATaGCTTCAACAACAGCAGTTT +
Preference number: 2 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHMPQTG*LQQQQF
Trigger: AAACTGCTGTTGTTGAAGCCATCCAGTCTGTGGCAT...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCAAAATGCCACAGACTaGATGGCTTCAACAACAGCA +
Preference number: 2 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHQNATD*MASTTA
Trigger: TGCTGTTGTTGAAGCCATCCAGTCTGTGGCATTTTG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGCCAGATTCTTGTTATaGAGTCTCCTCAAGTTTCTC +
Preference number: 2 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEARFLL*SLLKFL
Trigger: GAGAAACTTGAGGAGACTTCATAACAAGAATCTGGC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTGCCTGGGTAAGAGACTaGGACCTTCATCTCCAAAAA +
Preference number: 2 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGAWVRD*DLHLQK
Trigger: TTTTTGGAGATGAAGGTCTCAGTCTCTTACCCAGGC...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCCTGAGGCATGAAAAGTaGTCGAACCTGGGAGGCGGG +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPLRHEK*SNLGGG
Trigger: CCCGCCTCCCAGGTTCGAGCACTTTTCATGCCTCAG...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCAAAAGTGCTCGAACCTaGGAGGCGGGGGTTGCAGTG +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPKSART*EAGVAV
Trigger: CACTGCAACCCCCGCCTCCCAGGTTCGAGCACTTTT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCGCCTGGGTAAGAGACTaGGACCTTCATCTCCAAAAA +
Preference number: 2 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLAWVRD*DLHLQK
Trigger: TTTTTGGAGATGAAGGTCTCAGTCTCTTACCCAGGC...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATGGAGAGAAAAAGAATTaGAATTCCCAGGTTACACAG +
Preference number: 2 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHGEKKN*NSQVTQ
Trigger: CTGTGTAACCTGGGAATTCCAATTCTTTTTCTCTCC...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCTGGGATTACAGGCATaGGCCAAGTGTTGTCAGTTT +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHLGLQA*AKCCQF
Trigger: AAACTGACAACACTTGGCTCATGCCTGTAATCCCAG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCACAGCATCACCCCAATaGTCCAGGCCAAAACTCTCC +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPTASPQ*SRPKLS
Trigger: GGAGAGTTTTGGCCTGGAGCATTGGGGTGATGCTGT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATCCTCAAGTTTCTCATaGAGATTTATTTGGATGGGC +
Preference number: 2 (lower is better)
Translates to: QERTLVSTTRQSHRSQERSSSFS*RFIWMG
Trigger: GCCCATCCAAATAAATCTCCATGAGAAACTTGAGGA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCATCAAAAAGATAGGCTaGGTACGGTGGTTCACACCT +
Preference number: 2 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLIKKIG*VRWFTP
Trigger: AGGTGTGAACCACCGTACCCAGCCTATCTTTTTGAT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATTCATTTCTACCAACCTaGGTGATGGCTCTCTTGCTA +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHSFLPT*VMALLL
Trigger: TAGCAAGAGAGCCATCACTCAGGTTGGTAGAAATGA...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCGGTAGGCATTTCCGATaGCCTAGAATCCATTCCCAG +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPGRHFR*PRIHSQ
Trigger: CTGGGAATGGATTCTAGGGCATCGGAAATGCCTACC...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTCCTCAAGTTTCTCATaGAGATTTATTTGGATGGGC +
Preference number: 2 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSSSFS*RFIWMG
Trigger: GCCCATCCAAATAAATCTCCATGAGAAACTTGAGGA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAGCTTAGCTCTTCAGTaGGGTTTCAGTTTGAATTTG +
Preference number: 2 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSLALQ*GFSLNL
Trigger: CAAATTCAAACTGAAACCCCACTGAAGAGCTAAGCT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATGCCAGATTCTTGTTATaGAGTCTCCTCAAGTTTCTC +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHARFLL*SLLKFL
Trigger: GAGAAACTTGAGGAGACTTCATAACAAGAATCTGGC...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCGCTAGAGTGCAGTGGTaGAATCTCAACTCACTGCAA +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPARVQW*NLNSLQ
Trigger: TTGCAGTGAGTTGAGATTGCACCACTGCACTCTAGC...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATTCATGGAGATTTATTTaGATGGGCATAGCCTACCTC +
Preference number: 2 (lower is better)
Translates to: ILDAENFGERSPINSVNHSWRFI*MGIAYL
Trigger: GAGGTAGGCTATGCCCATCCAAATAAATCTCCATGA...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCCTCCATGATGCCTCTTaGAGTAACCCAAACAGATGT +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPLHDAS*SNPNRC
Trigger: ACATCTGTTTGGGTTACTTCAAGAGGCATCATGGAG...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCTTCTACCAACCTGAGTaGTGGCTCTCTTGCTATGAT +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPFYQPE*WLSCYD
Trigger: ATCATAGCAAGAGAGCCATCACTCAGGTTGGTAGAA...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCTCATTTCTACCAACCTaGGTGATGGCTCTCTTGCTA +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPSFLPT*VMALLL
Trigger: TAGCAAGAGAGCCATCACTCAGGTTGGTAGAAATGA...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCACTGCCATAACAAAATaGCACAGACTGGATGGCTTC +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPTAITK*HRLDGF
Trigger: GAAGCCATCCAGTCTGTGGCATTTTGTTATGGCAGT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCATCAAAAAGATAGGCTaGGTACGGTGGTTCACACCT +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPIKKIG*VRWFTP
Trigger: AGGTGTGAACCACCGTACCCAGCCTATCTTTTTGAT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR TCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCGAATACAGTGAACTATaGTCATACCACTGCACCCTA +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPEYSEL*SYHCTL
Trigger: TAGGGTGCAGTGGTATGATCATAGTTCACTGTATTC...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR CAA 90 bp ACAATACTCTGTGACGAAGAGACTATATCCTTGATGCTGAGAACTTaGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAG +
Preference number: 2 (lower is better)
Translates to: TILCDEETISLMLRT*ENAHLLILSIIKEK
Trigger: CTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGATATAGTCTCTTCGTCACAGAGTATTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCTGTCAGTTTCTATCGTaGAACCTACACATATTCAGA +
Preference number: 2 (lower is better)
Translates to: NFGERSPINSVNHKRKEPCQFLS*NLHIFR
Trigger: TCTGAATATGTGTAGGTTCCACGATAGAAACTGACA...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR GCA 72 bp TGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTaGCAGCGGGCCACAGCATCACCCCAATGCTCCAGG +
Preference number: 3 (lower is better)
Translates to: WHWVKRGCRLEC*QRATASPQCSR
Trigger: CCTGGAGCATTGGGGTGATGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR GCA 72 bp GCAGGGTTGGTTTCTCCTGAGGCCCCCTCCTCGGCTTaGAGACGGCCACCTTCTCACTGTGTCCTCACGTGG +
Preference number: 3 (lower is better)
Translates to: AGLVSPEAPSSA*RRPPSHCVLTW
Trigger: CCACGTGAGGACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAACCAACCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR TCA 72 bp GCCCAAGATCAAGGTGATTGCAGGGTTGGTTTCTCCTaGGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTC +
Preference number: 3 (lower is better)
Translates to: AQDQGDCRVGFS*GPLLGLQTATF
Trigger: GAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAACCAACCCTGCAATCACCTTGATCTTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR TCA 72 bp CTCACACCTTTGGGGGCTGAAAGCCCAAGATCAAGGTaGTTGCAGGGTTGGTTTCTCCTGAGGCCCCCTCCT +
Preference number: 3 (lower is better)
Translates to: LTPLGAESPRSR*LQGWFLLRPPP
Trigger: AGGAGGGGGCCTCAGGAGAAACCAACCCTGCAATCACCTTGATCTTGGGCTTTCAGCCCCCAAAGGTGTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCCTACAGGATTAGGGTaGCATTCTTATGACTTCATT +
Preference number: 3 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVPTGLG*HSYDFI
Trigger: AATGAAGTCATAAGAATGCAACCCTAATCCTGTAGG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTGGCCCCCTCCTCGGCTaGCAGACGGCCACCTTCTCA +
Preference number: 3 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSGPLLG*QTATFS
Trigger: TGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCC...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATGGCCCCCTCCTCGGCTaGCAGACGGCCACCTTCTCA +
Preference number: 3 (lower is better)
Translates to: ILDAENFGERSPINSVNHGPLLG*QTATFS
Trigger: TGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCC...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR GCA 72 bp AAAGTTTGGGTCTCTCTCTCAGGTAGGCATTTCCGATaGCCTAGAATCCATTCCCAGTGGTCTGGCATTGGG +
Preference number: 3 (lower is better)
Translates to: KVWVSLSGRHFR*PRIHSQWSGIG
Trigger: CCCAATGCCAGACCACTGGGAATGGATTCTAGGGCATCGGAAATGCCTACCTGAGAGAGAGACCCAAACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCAAGGTGATTGCAGGGTaGGTTTCTCCTGAGGCCCCC +
Preference number: 3 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLKVIAG*VSPEAP
Trigger: GGGGGCCTCAGGAGAAACCAACCCTGCAATCACCTT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTTTAGATGCATTTAAGTaGGGCATCAAGCCGCAGGCC +
Preference number: 3 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGLDAFK*GIKPQA
Trigger: GGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAA...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR CCA 72 bp GCAGTTTATCAACCGAAGTTTATTTTCTCACACCTTTaGGGGCTGAAAGCCCAAGATCAAGGTGATTGCAGG +
Preference number: 3 (lower is better)
Translates to: AVYQPKFIFSHL*GLKAQDQGDCR
Trigger: CCTGCAATCACCTTGATCTTGGGCTTTCAGCCCCCAAAGGTGTGAGAAAATAAACTTCGGTTGATAAACTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTCTCATGGAGATTTATTaGGATGGGCATAGCCTACCT +
Preference number: 3 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSLMEIY*DGHSLP
Trigger: AGGTAGGCTATGCCCATCCAAATAAATCTCCATGAG...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTCAGTGGGGTTTCAGTTaGAATTTGGGATTGCCATTG +
Preference number: 3 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSQWGFS*NLGLPL
Trigger: CAATGGCAATCCCAAATTCAAACTGAAACCCCACTG...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR TCA 72 bp AGAGTCAATGTTCAAGTTCATTTCTACCAACCTGAGTaGTGGCTCTCTTGCTATGATGTAGTTACAGCAGGG +
Preference number: 3 (lower is better)
Translates to: RVNVQVHFYQPE*WLSCYDVVTAG
Trigger: CCCTGCTGTAACTACATCATAGCAAGAGAGCCATCACTCAGGTTGGTAGAAATGAACTTGAACATTGACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCTCATGGAGATTTATTaGGATGGGCATAGCCTACCT +
Preference number: 3 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLLMEIY*DGHSLP
Trigger: AGGTAGGCTATGCCCATCCAAATAAATCTCCATGAG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGGAGAGAAAAAGAATaGGAATTCCCAGGTTACACA +
Preference number: 3 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGRREKE*EFPGYT
Trigger: TGTGTAACCTGGGAATTCCAATTCTTTTTCTCTCCT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAATTGTTCATCAGATTaGAGCATCTGTATCCTCCCT +
Preference number: 3 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSNCSSD*SICILP
Trigger: AGGGAGGATACAGATGCTCAAATCTGATGAACAATT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR TCA 72 bp TCTGTATTATACCCAGAATCAACAGTAAATTCCACTTaGTGTAAGTCAGCCTGTAGAGATCTAATGAAGCTT +
Preference number: 3 (lower is better)
Translates to: SVLYPESTVNST*CKSACRDLMKL
Trigger: AAGCTTCATTAGATCTCTACAGGCTGACTTACATCAAGTGGAATTTACTGTTGATTCTGGGTATAATACAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAGCTGCCCAGGCTGTTaGAGCACCTGCTTCCTCCTG +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATSCPGC*STCFLL
Trigger: CAGGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAGCCGTCCTCCTCTGCTaGCAACTGGAGCTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATAVLLC*QLELLF
Trigger: AAAGAGAAGCTCCAGTTGTCAGCAGAGGAGGACGGC...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAGAGACGCAGTGGGCATaGCCATTGGAGGCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATETQWA*PLEAAK
Trigger: TTTTGCAGCCTCCAATGGCCATGCCCACTGCGTCTC...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCTCTCCATCACAGGCTaGTGTCGACCAGCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVLSITG*CRPAAQ
Trigger: CTGGGCAGCTGGTCGACACCAGCCTGTGATGGAGAG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACACCATTCCCAGTGGTCTaGCATTGGGTAAAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATPFPVV*HWVKRG
Trigger: CCCCCTCTTTACCCAATGCCAGACCACTGGGAATGG...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAGTTTGAGACCAGCCTaGGCAATGTGGCAAGACCCC +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATSLRPA*AMWQDP
Trigger: GGGGTCTTGCCACATTGCCCAGGCTGGTCTCAAACT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAGCTACTTGGGAGGCTaGGGTGGGAGGAGATCATTT +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATSYLGG*GGRRSF
Trigger: AAATGATCTCCTCCCACCTCAGCCTCCCAAGTAGCT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAGTTCATGATGTTCTGTaGAGTGGCAGCCTTGTCCAG +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATVHDVL*SGSLVQ
Trigger: CTGGACAAGGCTGCCACTGCACAGAACATCATGAAC...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAGAATGGATTCATGGTaGACACTGCCGTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATRMDSW*TLPSSS
Trigger: AGAGGAGGACGGCAGTGTGCACCATGAATCCATTCT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCACGGCAGATCATCTTTaGGGCCGTTTTCCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVTADHL*GRFPLP
Trigger: AGGGAGAGGAAAACGGCCTCAAAGATGATCTGCCGT...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACATGCATTTGTATGCTCTaGAGGTCCTCATCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATCICML*RSSSEQ
Trigger: CTGCTCTGATGAGGACCTTCAGAGCATACAAATGCA...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTGTTGGCACCAAAGTTaGCCAGGAATGAGACGCAGT +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVCWHQS*PGMRRS
Trigger: ACTGCGTCTCATTCCTGGTCAACTTTGGTGCCAACA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCGGTCCCCTCCTCTACTaGAGATTATCTCTAGGGCTT +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVGPLLY*RLSLGL
Trigger: AAGCCCTAGAGATAATCTGCAGTAGAGGAGGGGACC...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCGGTAGGCATTTCCGATaGCCTAGAATCCATTCCCAG +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVGRHFR*PRIHSQ
Trigger: CTGGGAATGGATTCTAGGGCATCGGAAATGCCTACC...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAACTGCCATAACAAAATaGCACAGACTGGATGGCTTC +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATTAITK*HRLDGF
Trigger: GAAGCCATCCAGTCTGTGGCATTTTGTTATGGCAGT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACATCAGAACTTTCTTCCTaGGACCCAGCTGCATTTGTA +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATSELSS*DPAAFV
Trigger: TACAAATGCAGCTGGGTCCCAGGAAGAAAGTTCTGA...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACACAAAATGCCACAGACTaGATGGCTTCAACAACAGCA +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATQNATD*MASTTA
Trigger: TGCTGTTGTTGAAGCCATCCAGTCTGTGGCATTTTG...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAGTTACAGCAGGGGGTaGAGCAAATATCTCATTAGG +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATSYSRG*SKYLIR
Trigger: CCTAATGAGATATTTGCTCCACCCCCTGCTGTAACT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAGCCAGATTCTTGTTATaGAGTCTCCTCAAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATARFLL*SLLKFL
Trigger: GAGAAACTTGAGGAGACTTCATAACAAGAATCTGGC...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCGCCTGGGTAAGAGACTaGGACCTTCATCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVAWVRD*DLHLQK
Trigger: TTTTTGGAGATGAAGGTCTCAGTCTCTTACCCAGGC...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCCAGCTGCATTTGTATaGTCTGAAGGTCCTCATCAG +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVPAAFV*SEGPHQ
Trigger: CTGATGAGGACCTTCAGAGCATACAAATGCAGCTGG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGGGTGCCGCCTGGAGTaGTGCCAGCGGGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEGCRLE*CQRATA
Trigger: TGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCACCC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTTCTACCAACCTGAGTaGTGGCTCTCTTGCTATGAT +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVFYQPE*WLSCYD
Trigger: ATCATAGCAAGAGAGCCATCACTCAGGTTGGTAGAA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAACCAAACTCTCTCTTaGTATCTGAGATGTCTTCAG +
Preference number: 4 (lower is better)
Translates to: VWHWVKRGCRLECCQRATNQTLS*YLRCLQ
Trigger: CTGAAGACATCTCAGATAGCAAGAGAGAGTTTGGTT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTCAGAACTTTCTTCCTaGGACCCAGCTGCATTTGTA +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVSELSS*DPAAFV
Trigger: TACAAATGCAGCTGGGTCCCAGGAAGAAAGTTCTGA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCATGCCACAGACTGGATaGCTTCAACAACAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVMPQTG*LQQQQF
Trigger: AAACTGCTGTTGTTGAAGCCATCCAGTCTGTGGCAT...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCGCAACCTCCACCTTTTaGGTTCAAGCAATTCTCTTG +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVATSTF*VQAILL
Trigger: CAAGAGAATTGCTTGAACCCAAAAGGTGGAGGTTGC...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCGCTTCTAGATCAATCTaGTCTCTCTTGAAGATAGGC +
Preference number: 4 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVASRSI*SLLKIG
Trigger: GCCTATCTTCAAGAGAGAGCAGATTGATCTAGAAGC...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTTGCCGCCTGGAGTGCTaGCAGCGGGCCACAGCATCA +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGCRLEC*QRATAS
Trigger: TGATGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCA...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCTCCTGGCATTCTTCTaGGCCTGCTCCTTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHLLAFF*ACSFSL
Trigger: CAGGCTGAAGGAGCAGGCTCAGAAGAATGCCAGGAG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCAGGAGGCTGAGGCATaGAAAGTGCTCGAACCTGGG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHQEAEA*KVLEPG
Trigger: CCCAGGTTCGAGCACTTTTCATGCCTCAGCCTCCTG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGGGTTGGTTTCTCCTaGGGCCCCCTCCTCGGCTTG +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGRVGFS*GPLLGL
Trigger: CAAGCCGAGGAGGGGGCCTCAGGAGAAACCAACCCT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTGGGTAAAGAGGGGGTaGCGCCTGGAGTGCTGCCAG +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSWVKRG*RLECCQ
Trigger: CTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTCTGGGAGGCGGGGGTTaGAGTGAGCTGAGATCACGC +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGLGGGG*SELRSR
Trigger: GCGTGATCTCAGCTCACTGCAACCCCCGCCTCCCAG...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCATTCTGCTCCCTGCTaGCAGCAGCATCCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHHSAPC*QQHPVE
Trigger: CTCCACTGGATGCTGCTGCCAGCAGGGAGCAGAATG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACTCTCCATCACAGGCTaGTGTCGACCAGCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERLSITG*CRPAAQ
Trigger: CTGGGCAGCTGGTCGACACCAGCCTGTGATGGAGAG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATAAAAGTGCTCGAACCTaGGAGGCGGGGGTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHKSART*EAGVAV
Trigger: CACTGCAACCCCCGCCTCCCAGGTTCGAGCACTTTT...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATGCACTCCAGCATGAGTaGCAGAGCAAGGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHALQHE*QSKAPS
Trigger: AGATGGAGCCTTGCTCTGTCACTCATGCTGGAGTGC...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGCACTCCAGCATGAGTaGCAGAGCAAGGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEALQHE*QSKAPS
Trigger: AGATGGAGCCTTGCTCTGTCACTCATGCTGGAGTGC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCACACCTTTGGGGGCTaGAAGCCCAAGATCAAGGTG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHHTFGG*KPKIKV
Trigger: CACCTTGATCTTGGGCTTTCAGCCCCCAAAGGTGTG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAACACTTCCAGGGGCGTaGCATCGACCACATCTTCCT +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKETLPGA*HRPHLP
Trigger: AGGAAGATGTGGTCGATGCCACGCCCCTGGAAGTGT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCAGAGGGGGTGCCGCCTaGAGTGCTGCCAGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: NFGERSPINSVNHKRKEPRGGAA*SAASGP
Trigger: TGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTCCAGTGGTCTGGCATTaGGTAAAGAGGGGGTGCCGC +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGPVVWH*VKRGCR
Trigger: GCGGCACCCCCTCTTTACCCAATGCCAGACCACTGG...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCAGCTGCCCAGGCTGTTaGAGCACCTGCTTCCTCCTG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLSCPGC*STCFLL
Trigger: CAGGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAAGCTACTTGGGAGGCTaGGGTGGGAGGAGATCATTT +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKESYLGG*GGRRSF
Trigger: AAATGATCTCCTCCCACCTCAGCCTCCCAAGTAGCT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAATTCATTCTGCTCCCTaGTGGCAGCAGCATCCAGTG +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEIHSAP*WQQHPV
Trigger: CACTGGATGCTGCTGCCAGCAGGGAGCAGAATGAAT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATCCCGGATTCCTCCTTaGTGTAGGTGTGGGCCATCT +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERSRIPP*CRCGPS
Trigger: AGATGGCCCACACCTACAGCAAGGAGGAATCCGGGA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCTGGGAGGCGGGGGTTaGAGTGAGCTGAGATCACGC +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHLGGGG*SELRSR
Trigger: GCGTGATCTCAGCTCACTGCAACCCCCGCCTCCCAG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCCAGTGGTCTGGCATTaGGTAAAGAGGGGGTGCCGC +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLPVVWH*VKRGCR
Trigger: GCGGCACCCCCTCTTTACCCAATGCCAGACCACTGG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAAAAGTGCTCGAACCTaGGAGGCGGGGGTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSKSART*EAGVAV
Trigger: CACTGCAACCCCCGCCTCCCAGGTTCGAGCACTTTT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTGTCTCTCTTACCGCCTaGGCTAGAGTGCAGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGVSLTA*ARVQWC
Trigger: GCACCACTGCACTCTAGCCCAGGCGGTAAGAGAGAC...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAAAGTTGACCAGGAATaGGACGCAGTGGGCATGGCC +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSKVDQE*DAVGMA
Trigger: GGCCATGCCCACTGCGTCTCATTCCTGGTCAACTTT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAACTCTTTGAAGTCCCCTaGGAACGAGTCTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKELFEVP*ERVFLF
Trigger: GAAGAGGAAGACTCGTTCTCAGGGGACTTCAAAGAG...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCAGGAGGCTGAGGCATaGAAAGTGCTCGAACCTGGG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLQEAEA*KVLEPG
Trigger: CCCAGGTTCGAGCACTTTTCATGCCTCAGCCTCCTG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAATTCATTCTGCTCCCTaGTGGCAGCAGCATCCAGTG +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERIHSAP*WQQHPV
Trigger: CACTGGATGCTGCTGCCAGCAGGGAGCAGAATGAAT...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGGAATGAGACGCAGTaGGCATGGCCATTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGRNETQ*AWPLEA
Trigger: AGCCTCCAATGGCCATGCCCACTGCGTCTCATTCCT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTTGAGAATGGATTCATaGTGCACACTGCCGTCCTCC +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHLRMDS*CTLPSS
Trigger: GGAGGACGGCAGTGTGCACCATGAATCCATTCTCAA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTACACTTCCAGGGGCGTaGCATCGACCACATCTTCCT +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSTLPGA*HRPHLP
Trigger: AGGAAGATGTGGTCGATGCCACGCCCCTGGAAGTGT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCGCCGTCCTCCTCTGCTaGCAACTGGAGCTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLAVLLC*QLELLF
Trigger: AAAGAGAAGCTCCAGTTGTCAGCAGAGGAGGACGGC...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAAATTCTTCCAGGTGCTaGGACAGCAAGAACACTTCC +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKENSSRC*DSKNTS
Trigger: GGAAGTGTTCTTGCTGTCTCAGCACCTGGAAGAATT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTGCATTTGTATGCTCTaGAGGTCCTCATCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHCICML*RSSSEQ
Trigger: CTGCTCTGATGAGGACCTTCAGAGCATACAAATGCA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAACTGGGATTACAGGCATaGGCCAAGTGTTGTCAGTTT +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKELGLQA*AKCCQF
Trigger: AAACTGACAACACTTGGCTCATGCCTGTAATCCCAG...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCTCCCGGATTCCTCCTTaGTGTAGGTGTGGGCCATCT +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLSRIPP*CRCGPS
Trigger: AGATGGCCCACACCTACAGCAAGGAGGAATCCGGGA...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCCAGCTGCATTTGTATaGTCTGAAGGTCCTCATCAG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHPAAFV*SEGPHQ
Trigger: CTGATGAGGACCTTCAGAGCATACAAATGCAGCTGG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAAGTGGGCATGGCCATTaGAGGCTGCAAAATGTAGAG +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERSGHGH*RLQNVE
Trigger: CTCTACATTTTGCAGCCTCCAATGGCCATGCCCACT...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCATTCTGCTCCCTGCTaGCAGCAGCATCCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHHSAPC*QQHPVE
Trigger: CTCCACTGGATGCTGCTGCCAGCAGGGAGCAGAATG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTTGGAGAAGGTACCCTTaGAAGAAGAGAGAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGWRRYP*KKRESR
Trigger: CCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCA...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTTGAAGGGGATGATCTaGAGAAGGTACCCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHLKGMI*RRYPWK
Trigger: CTTCCAAGGGTACCTTCTCCAGATCATCCCCTTCAA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATTGAGAATGGATTCATaGTGCACACTGCCGTCCTCC +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERLRMDS*CTLPSS
Trigger: GGAGGACGGCAGTGTGCACCATGAATCCATTCTCAA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCCATTCCCAGTGGTCTaGCATTGGGTAAAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLPFPVV*HWVKRG
Trigger: CCCCCTCTTTACCCAATGCCAGACCACTGGGAATGG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAGTTGACCAGGAATaGGACGCAGTGGGCATGGCC +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHKVDQE*DAVGMA
Trigger: GGCCATGCCCACTGCGTCTCATTCCTGGTCAACTTT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTGTTGGCACCAAAGTTaGCCAGGAATGAGACGCAGT +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSCWHQS*PGMRRS
Trigger: ACTGCGTCTCATTCCTGGTCAACTTTGGTGCCAACA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCCTTCTTGGGGTTCATaGTGTTCTGTGCAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLPSWGS*CSVQWQ
Trigger: CTGCCACTGCACAGAACATCATGAACCCCAAGAAGG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTCTTCCTCTTCCTCTCTaGACACTTCCATCACGTTCC +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSLPLPL*TLPSRS
Trigger: GGAACGTGATGGAAGTGTTCAGAGAGGAAGAGGAAG...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTCTCTTTGAAGTCCCCTaGGAACGAGTCTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSLFEVP*ERVFLF
Trigger: GAAGAGGAAGACTCGTTCTCAGGGGACTTCAAAGAG...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCACACCTTTGGGGGCTaGAAGCCCAAGATCAAGGTG +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHHTFGG*KPKIKV
Trigger: CACCTTGATCTTGGGCTTTCAGCCCCCAAAGGTGTG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACTGGGATTACAGGCATaGGCCAAGTGTTGTCAGTTT +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERLGLQA*AKCCQF
Trigger: AAACTGACAACACTTGGCTCATGCCTGTAATCCCAG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAATCATTTCTACCAACCTaGGTGATGGCTCTCTTGCTA +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKESFLPT*VMALLL
Trigger: TAGCAAGAGAGCCATCACTCAGGTTGGTAGAAATGA...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTCATTTCTACCAACCTaGGTGATGGCTCTCTTGCTA +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHSFLPT*VMALLL
Trigger: TAGCAAGAGAGCCATCACTCAGGTTGGTAGAAATGA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTGTTCCCATGGTAGGCTaGCAAGAGAGTAGGAGTCAT +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSVPMVG*QESRSH
Trigger: ATGACTCCTACTCTCTTGGCAGCCTACCATGGGAAC...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCATTCATGGTGCACACTaGCGTCCTCCTCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLIHGAH*RPPLLT
Trigger: TGTCAGCAGAGGAGGACGGCAGTGTGCACCATGAAT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTAGAATGGATTCATGGTaGACACTGCCGTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGRMDSW*TLPSSS
Trigger: AGAGGAGGACGGCAGTGTGCACCATGAATCCATTCT...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTGGTAGGCATTTCCGATaGCCTAGAATCCATTCCCAG +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSGRHFR*PRIHSQ
Trigger: CTGGGAATGGATTCTAGGGCATCGGAAATGCCTACC...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCGTGGCCTCTCTGTGTaGCTTCCACCTAAGTGTCTC +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHRGLSV*LPPKCL
Trigger: GAGACACTTAGGTGGAAGGCACACAGAGAGGCCACG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAGCTAGAGTGCAGTGGTaGAATCTCAACTCACTGCAA +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERARVQW*NLNSLQ
Trigger: TTGCAGTGAGTTGAGATTGCACCACTGCACTCTAGC...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATGAGACGCAGTGGGCATaGCCATTGGAGGCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHETQWA*PLEAAK
Trigger: TTTTGCAGCCTCCAATGGCCATGCCCACTGCGTCTC...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCTGGAGAAGGTACCCTTaGAAGAAGAGAGAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLWRRYP*KKRESR
Trigger: CCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCA...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATTGAAGGGGATGATCTaGAGAAGGTACCCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERLKGMI*RRYPWK
Trigger: CTTCCAAGGGTACCTTCTCCAGATCATCCCCTTCAA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATATCAAAAAGATAGGCTaGGTACGGTGGTTCACACCT +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHIKKIG*VRWFTP
Trigger: AGGTGTGAACCACCGTACCCAGCCTATCTTTTTGAT...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCCTCCTGGCATTCTTCTaGGCCTGCTCCTTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: NFGERSPINSVNHKRKEPLLAFF*ACSFSL
Trigger: CAGGCTGAAGGAGCAGGCTCAGAAGAATGCCAGGAG...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCACCCTCATCAGCCTCTaGTGCTCCTTGTCTTTGAAG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLTLISL*CSLSLK
Trigger: CTTCAAAGACAAGGAGCATCAGAGGCTGATGAGGGT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATACGGCAGATCATCTTTaGGGCCGTTTTCCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHTADHL*GRFPLP
Trigger: AGGGAGAGGAAAACGGCCTCAAAGATGATCTGCCGT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTGCCTGGGTAAGAGACTaGGACCTTCATCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSAWVRD*DLHLQK
Trigger: TTTTTGGAGATGAAGGTCTCAGTCTCTTACCCAGGC...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCGTTCCCATGGTAGGCTaGCAAGAGAGTAGGAGTCAT +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLVPMVG*QESRSH
Trigger: ATGACTCCTACTCTCTTGGCAGCCTACCATGGGAAC...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATACAGCATCACCCCAATaGTCCAGGCCAAAACTCTCC +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHTASPQ*SRPKLS
Trigger: GGAGAGTTTTGGCCTGGAGCATTGGGGTGATGCTGT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTCCCAGAGTAAAGTTTaGGTCTCTCTCTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSQSKV*VSLSGR
Trigger: CCTACCTGAGAGAGAGACCCAAACTTTACTCTGGGA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTCATGGAGATTTATTTaGATGGGCATAGCCTACCTC +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHSWRFI*MGIAYL
Trigger: GAGGTAGGCTATGCCCATCCAAATAAATCTCCATGA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAATCAAAAAGATAGGCTaGGTACGGTGGTTCACACCT +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERIKKIG*VRWFTP
Trigger: AGGTGTGAACCACCGTACCCAGCCTATCTTTTTGAT...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCGTCTCTCTTACCGCCTaGGCTAGAGTGCAGTGGTGC +
Preference number: 4 (lower is better)
Translates to: NFGERSPINSVNHKRKEPVSLTA*ARVQWC
Trigger: GCACCACTGCACTCTAGCCCAGGCGGTAAGAGAGAC...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCTTCCTCTTCCTCTCTaGACACTTCCATCACGTTCC +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHLPLPL*TLPSRS
Trigger: GGAACGTGATGGAAGTGTTCAGAGAGGAAGAGGAAG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCTAGACCTGGACGATTaGGAATGGATTCATGGTGCA +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLLDLDD*EWIHGA
Trigger: TGCACCATGAATCCATTCTCAATCGTCCAGGTCTAG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCAATTCTTCCAGGTGCTaGGACAGCAAGAACACTTCC +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLNSSRC*DSKNTS
Trigger: GGAAGTGTTCTTGCTGTCTCAGCACCTGGAAGAATT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATTGGGAGGAGATCATTTaGGCCCAGGAGGTTGAGAAT +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHWEEII*AQEVEN
Trigger: ATTCTCAACCTCCTGGGCTCAAATGATCTCCTCCCA...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAACAGTAAATTCCACTTaGTGTAAGTCAGCCTGTAGA +
Preference number: 4 (lower is better)
Translates to: VKGLDAFKLGIKPQARKETVNST*CKSACR
Trigger: TCTACAGGCTGACTTACATCAAGTGGAATTTACTGT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTCTCCATGATGCCTCTTaGAGTAACCCAAACAGATGT +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGLHDAS*SNPNRC
Trigger: ACATCTGTTTGGGTTACTTCAAGAGGCATCATGGAG...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTCTCCATGATGCCTCTTaGAGTAACCCAAACAGATGT +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSLHDAS*SNPNRC
Trigger: ACATCTGTTTGGGTTACTTCAAGAGGCATCATGGAG...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTCTCCTAAAAAGGGATaGGAGTCAATGTTCAAGTTC +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHSPKKG*ESMFKF
Trigger: GAACTTGAACATTGACTCTCATCCCTTTTTAGGAGA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATGTTCATGATGTTCTGTaGAGTGGCAGCCTTGTCCAG +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHVHDVL*SGSLVQ
Trigger: CTGGACAAGGCTGCCACTGCACAGAACATCATGAAC...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACTTCCCCACCTGTTCTaGTGTATCTTTGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERLPHLF*CIFVLL
Trigger: AAGAAGAACAAAGATACAGCAGAACAGGTGGGGAAG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTACTGCCATAACAAAATaGCACAGACTGGATGGCTTC +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSTAITK*HRLDGF
Trigger: GAAGCCATCCAGTCTGTGGCATTTTGTTATGGCAGT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATACACATATTCAGATATaGGGCAATGGTGACAGACAA +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHTHIQI*GNGDRQ
Trigger: TTGTCTGTCACCATTGCCGCATATCTGAATATGTGT...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAGTGGGCATGGCCATTaGAGGCTGCAAAATGTAGAG +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHSGHGH*RLQNVE
Trigger: CTCTACATTTTGCAGCCTCCAATGGCCATGCCCACT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAGTTACAGCAGGGGGTaGAGCAAATATCTCATTAGG +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSYSRG*SKYLIR
Trigger: CCTAATGAGATATTTGCTCCACCCCCTGCTGTAACT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR CAA 72 bp CTAGGCAAAGTCATAGATCTCAGGAGAGAAAAAGAATaGGAATTCCCAGGTTACACAGATCGGAAAGCAAGC +
Preference number: 4 (lower is better)
Translates to: LGKVIDLRREKE*EFPGYTDRKAS
Trigger: GCTTGCTTTCCGATCTGTGTAACCTGGGAATTCCAATTCTTTTTCTCTCCTGAGATCTATGACTTTGCCTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCTAGACCTGGACGATTaGGAATGGATTCATGGTGCA +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHLDLDD*EWIHGA
Trigger: TGCACCATGAATCCATTCTCAATCGTCCAGGTCTAG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATCTCCTAAAAAGGGATaGGAGTCAATGTTCAAGTTC +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERSPKKG*ESMFKF
Trigger: GAACTTGAACATTGACTCTCATCCCTTTTTAGGAGA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCATTCATGGTGCACACTaGCGTCCTCCTCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: NFGERSPINSVNHKRKEPIHGAH*RPPLLT
Trigger: TGTCAGCAGAGGAGGACGGCAGTGTGCACCATGAAT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATTCCCAGAGTAAAGTTTaGGTCTCTCTCTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHSQSKV*VSLSGR
Trigger: CCTACCTGAGAGAGAGACCCAAACTTTACTCTGGGA...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTCATGGAGATTTATTTaGATGGGCATAGCCTACCTC +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSWRFI*MGIAYL
Trigger: GAGGTAGGCTATGCCCATCCAAATAAATCTCCATGA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCATGCCACAGACTGGATaGCTTCAACAACAGCAGTTT +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLMPQTG*LQQQQF
Trigger: AAACTGCTGTTGTTGAAGCCATCCAGTCTGTGGCAT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTGTCAGTTTCTATCGTaGAACCTACACATATTCAGA +
Preference number: 4 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHCQFLS*NLHIFR
Trigger: TCTGAATATGTGTAGGTTCCACGATAGAAACTGACA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCGAATACAGTGAACTATaGTCATACCACTGCACCCTA +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLEYSEL*SYHCTL
Trigger: TAGGGTGCAGTGGTATGATCATAGTTCACTGTATTC...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATTTCTACCAACCTGAGTaGTGGCTCTCTTGCTATGAT +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHFYQPE*WLSCYD
Trigger: ATCATAGCAAGAGAGCCATCACTCAGGTTGGTAGAA...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTACACATATTCAGATATaGGGCAATGGTGACAGACAA +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSTHIQI*GNGDRQ
Trigger: TTGTCTGTCACCATTGCCGCATATCTGAATATGTGT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTTCCTCAAGTTTCTCATaGAGATTTATTTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGSSSFS*RFIWMG
Trigger: GCCCATCCAAATAAATCTCCATGAGAAACTTGAGGA...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTGGAGAGAAAAAGAATTaGAATTCCCAGGTTACACAG +
Preference number: 4 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSGEKKN*NSQVTQ
Trigger: CTGTGTAACCTGGGAATTCCAATTCTTTTTCTCTCC...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTGGAGAGAAAAAGAATTaGAATTCCCAGGTTACACAG +
Preference number: 4 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGGEKKN*NSQVTQ
Trigger: CTGTGTAACCTGGGAATTCCAATTCTTTTTCTCTCC...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATCAAAATGCCACAGACTaGATGGCTTCAACAACAGCA +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHQNATD*MASTTA
Trigger: TGCTGTTGTTGAAGCCATCCAGTCTGTGGCATTTTG...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGATGTCAGTTTCTATCGTaGAACCTACACATATTCAGA +
Preference number: 4 (lower is better)
Translates to: QERTLVSTTRQSHRSQERCQFLS*NLHIFR
Trigger: TCTGAATATGTGTAGGTTCCACGATAGAAACTGACA...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATGAATACAGTGAACTATaGTCATACCACTGCACCCTA +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHEYSEL*SYHCTL
Trigger: TAGGGTGCAGTGGTATGATCATAGTTCACTGTATTC...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCATTGTTCATCAGATTTaGGCATCTGTATCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLIVHQI*ASVSSL
Trigger: TAGGGAGGATACAGATGCTCAAATCTGATGAACAAT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CCA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCAGCTTAGCTCTTCAGTaGGGTTTCAGTTTGAATTTG +
Preference number: 4 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLSLALQ*GFSLNL
Trigger: CAAATTCAAACTGAAACCCCACTGAAGAGCTAAGCT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATACAGTAAATTCCACTTaGTGTAAGTCAGCCTGTAGA +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHTVNST*CKSACR
Trigger: TCTACAGGCTGACTTACATCAAGTGGAATTTACTGT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR TCA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATATTGTTCATCAGATTTaGGCATCTGTATCCTCCCTA +
Preference number: 4 (lower is better)
Translates to: ILDAENFGERSPINSVNHIVHQI*ASVSSL
Trigger: TAGGGAGGATACAGATGCTCAAATCTGATGAACAAT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCCTTCCCCACCTGTTCTaGTGTATCTTTGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: NFGERSPINSVNHKRKEPLPHLF*CIFVLL
Trigger: AAGAAGAACAAAGATACAGCAGAACAGGTGGGGAAG...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR GCA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCGCTTCTAGATCAATCTaGTCTCTCTTGAAGATAGGC +
Preference number: 4 (lower is better)
Translates to: NFGERSPINSVNHKRKEPASRSI*SLLKIG
Trigger: GCCTATCTTCAAGAGAGAGCAGATTGATCTAGAAGC...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
3UTR CAA 72 bp TATATAACAATACTCTGTGACGAAGAGACTATATCCTaGATGCTGAGAACTTTGGAGAACGCTCACCTATTA +
Preference number: 4 (lower is better)
Translates to: YITILCDEETIS*MLRTLENAHLL
Trigger: TAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGATATAGTCTCTTCGTCACAGAGTATTGTTATATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 90 bp GGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAGCATCACCCCAATaGTCCAGGCCAAAACTCTCCATCACAGGCTGGTGTCGACCAGCT +
Preference number: 5 (lower is better)
Translates to: GCRLECCQRATASPQ*SRPKLSITGWCRPA
Trigger: AGCTGGTCGACACCAGCCTGTGATGGAGAGTTTTGGCCTGGAGCATTGGGGTGATGCTGTGGCCCGCTGGCAGCACTCCAGGCGGCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACACTGGAGAAGGTACCCTaGGAAGAAGAGAGAGTCCCG +
Preference number: 5 (lower is better)
Translates to: VWHWVKRGCRLECCQRATLEKVP*EEERVP
Trigger: CGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCAG...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAAGCCTCTCACACTCTTaGATCTGCCTCCTGGCATTC +
Preference number: 5 (lower is better)
Translates to: VWHWVKRGCRLECCQRATSLSHS*ICLLAF
Trigger: GAATGCCAGGAGGCAGATCAAAGAGTGTGAGAGGCT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAATGTTGGCACCAAAGTaGACCAGGAATGAGACGCAG +
Preference number: 5 (lower is better)
Translates to: VWHWVKRGCRLECCQRATMLAPK*TRNETQ
Trigger: CTGCGTCTCATTCCTGGTCAACTTTGGTGCCAACAT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCCTGGAGAAGGTACCCTaGGAAGAAGAGAGAGTCCCG +
Preference number: 5 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVLEKVP*EEERVP
Trigger: CGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCAG...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 90 bp ACAGCATCACCCCAATGCTCCAGGCCAAAACTCTCCATCACAGGCTaGTGTCGACCAGCTGCCCAGGCTGTTGAAGCACCTGCTTCCTCC +
Preference number: 5 (lower is better)
Translates to: TASPQCSRPKLSITG*CRPAAQAVEAPASS
Trigger: GGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCTGGTCGACACCAGCCTGTGATGGAGAGTTTTGGCCTGGAGCATTGGGGTGATGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTCCAGGGCAAAGATGTaGGCACCAAAGTTGACCAGG +
Preference number: 5 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVSRAKM*APKLTR
Trigger: CCTGGTCAACTTTGGTGCCAACATCTTTGCCCTGGA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACAACTATCACTAGCAGCTaGGTGGTAACGAGTAGACAT +
Preference number: 5 (lower is better)
Translates to: VWHWVKRGCRLECCQRATTITSS*VVTSRH
Trigger: ATGTCTACTCGTTACCACCAAGCTGCTAGTGATAGT...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACATTGATGCTGAGAACTTaGGAGAACGCTCACCTATTA +
Preference number: 5 (lower is better)
Translates to: VWHWVKRGCRLECCQRATLMLRT*ENAHLL
Trigger: TAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAA...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 90 bp GGAATTCTTCCAGGTGCTGAGACAGCAAGAACACTTCCAGGGGCGTaGCATCGACCACATCTTCCTCCCACTCCACTTCATCGTCATCCC +
Preference number: 5 (lower is better)
Translates to: GILPGAETARTLPGA*HRPHLPPTPLHRHP
Trigger: GGGATGACGATGAAGTGGAGTGGGAGGAAGATGTGGTCGATGCCACGCCCCTGGAAGTGTTCTTGCTGTCTCAGCACCTGGAAGAATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCACTATCACTAGCAGCTaGGTGGTAACGAGTAGACAT +
Preference number: 5 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVTITSS*VVTSRH
Trigger: ATGTCTACTCGTTACCACCAAGCTGCTAGTGATAGT...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTGCAACCTCCACCTTTaGGGTTCAAGCAATTCTCTT +
Preference number: 5 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVCNLHL*GSSNSL
Trigger: AAGAGAATTGCTTGAACCCAAAAGGTGGAGGTTGCA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS TCA 90 bp TCCTGGAGCCTCTCACACTCTTTGATCTGCCTCCTGGCATTCTTCTaGGCCTGCTCCTTCAGCCTGGTGACCTTCTTGGGGTTCATGATG +
Preference number: 5 (lower is better)
Translates to: SWSLSHSLICLLAFF*ACSFSLVTFLGFMM
Trigger: CATCATGAACCCCAAGAAGGTCACCAGGCTGAAGGAGCAGGCTCAGAAGAATGCCAGGAGGCAGATCAAAGAGTGTGAGAGGCTCCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 90 bp CAGTGGCAGCCTTGTCCAGGAGAGCAACACATTCATTCTGCTCCCTaGTGGCAGCAGCATCCAGTGGAGTCTGTAAGTCATTATCCAGGG +
Preference number: 5 (lower is better)
Translates to: QWQPCPGEQHIHSAP*WQQHPVESVSHYPG
Trigger: CCCTGGATAATGACTTACAGACTCCACTGGATGCTGCTGCCAGCAGGGAGCAGAATGAATGTGTTGCTCTCCTGGACAAGGCTGCCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTCTGGCATTGGGTAAAGAGGGGGTGCCGCCTGGAGTGCTGCCAGCGGGCCACATGTTCTGCTGTATCTTaGTTCTTCTTGAACTTGATC +
Preference number: 5 (lower is better)
Translates to: VWHWVKRGCRLECCQRATCSAVS*FFLNLI
Trigger: GATCAAGTTCAAGAAGAACAAAGATACAGCAGAACA...TGTGGCCCGCTGGCAGCACTCCAGGCGGCACCCCCTCTTTACCCAATGCCAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAGGCCCCCTCCTCGGCTaGCAGACGGCCACCTTCTCA +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERGPLLG*QTATFS
Trigger: TGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCC...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 90 bp CTGCTCCTTCAGCCTGGTGACCTTCTTGGGGTTCATGATGTTCTGTaGAGTGGCAGCCTTGTCCAGGAGAGCAACACATTCATTCTGCTC +
Preference number: 5 (lower is better)
Translates to: LLLQPGDLLGVHDVL*SGSLVQESNTFILL
Trigger: GAGCAGAATGAATGTGTTGCTCTCCTGGACAAGGCTGCCACTGCACAGAACATCATGAACCCCAAGAAGGTCACCAGGCTGAAGGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 90 bp TGGAGAAGGTACCCTTGGAAGAAGAGAGAGTCCCGGATTCCTCCTTaGTGTAGGTGTGGGCCATCTTATTTTGGTGCTTCTCCTGGAGCC +
Preference number: 5 (lower is better)
Translates to: WRRYPWKKRESRIPP*CRCGPSYFGASPGA
Trigger: GGCTCCAGGAGAAGCACCAAAATAAGATGGCCCACACCTACAGCAAGGAGGAATCCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 90 bp TGGCAGCCTTGTCCAGGAGAGCAACACATTCATTCTGCTCCCTGCTaGCAGCAGCATCCAGTGGAGTCTGTAAGTCATTATCCAGGGCAA +
Preference number: 5 (lower is better)
Translates to: WQPCPGEQHIHSAPC*QQHPVESVSHYPGQ
Trigger: TTGCCCTGGATAATGACTTACAGACTCCACTGGATGCTGCTGCCAGCAGGGAGCAGAATGAATGTGTTGCTCTCCTGGACAAGGCTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 90 bp CAGGAGCAGAAGCATTTGAAGGGGATGATCTGGAGAAGGTACCCTTaGAAGAAGAGAGAGTCCCGGATTCCTCCTTGCTGTAGGTGTGGG +
Preference number: 5 (lower is better)
Translates to: QEQKHLKGMIWRRYP*KKRESRIPPCCRCG
Trigger: CCCACACCTACAGCAAGGAGGAATCCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCAGATCATCCCCTTCAAATGCTTCTGCTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCAATTGTTCATCAGATTaGAGCATCTGTATCCTCCCT +
Preference number: 5 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVNCSSD*SICILP
Trigger: AGGGAGGATACAGATGCTCAAATCTGATGAACAATT...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 90 bp TTCTGTGCAGTGGCAGCCTTGTCCAGGAGAGCAACACATTCATTCTaGTCCCTGCTGGCAGCAGCATCCAGTGGAGTCTGTAAGTCATTA +
Preference number: 5 (lower is better)
Translates to: FCAVAALSRRATHSF*SLLAAASSGVCKSL
Trigger: TAATGACTTACAGACTCCACTGGATGCTGCTGCCAGCAGGGAGCAGAATGAATGTGTTGCTCTCCTGGACAAGGCTGCCACTGCACAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTTCTCCTGAGGCCCCCTCCTCGGCTTGCAGACGGCCACCTTCTCACTGTGTCTGTTCTGCTGTATCTTaGTTCTTCTTGAACTTGATC +
Preference number: 5 (lower is better)
Translates to: VSPEAPSSACRRPPSHCVCSAVS*FFLNLI
Trigger: GATCAAGTTCAAGAAGAACAAAGATACAGCAGAACA...GACACAGTGAGAAGGTGGCCGTCTGCAAGCCGAGGAGGGGGCCTCAGGAGAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS TCA 90 bp AAAACTCTCCATCACAGGCTGGTGTCGACCAGCTGCCCAGGCTGTTaGAGCACCTGCTTCCTCCTGTTGATAGCATTCAGAACTTTCTTC +
Preference number: 5 (lower is better)
Translates to: KTLHHRLVSTSCPGC*STCFLLLIAFRTFF
Trigger: GAAGAAAGTTCTGAATGCTATCAACAGGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCTGGTCGACACCAGCCTGTGATGGAGAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGGGACCCAGCTGCATTaGTATGCTCTGAAGGTCCTC +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEGTQLH*YALKVL
Trigger: GAGGACCTTCAGAGCATACAAATGCAGCTGGGTCCC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAAAGGTGATTGCAGGGTaGGTTTCTCCTGAGGCCCCC +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERKVIAG*VSPEAP
Trigger: GGGGGCCTCAGGAGAAACCAACCCTGCAATCACCTT...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAACAGTGGGCATGGCCATaGGAGGCTGCAAAATGTAGA +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEQWAWP*EAAKCR
Trigger: TCTACATTTTGCAGCCTCCAATGGCCATGCCCACTG...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAATCCAGGGCAAAGATGTaGGCACCAAAGTTGACCAGG +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKESRAKM*APKLTR
Trigger: CCTGGTCAACTTTGGTGCCAACATCTTTGCCCTGGA...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGTGGGCCATCTTATTTaGGTGCTTCTCCTGGAGCCT +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEVGHLI*VLLLEP
Trigger: AGGCTCCAGGAGAAGCACCAAAATAAGATGGCCCAC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAGGGACCCAGCTGCATTaGTATGCTCTGAAGGTCCTC +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERGTQLH*YALKVL
Trigger: GAGGACCTTCAGAGCATACAAATGCAGCTGGGTCCC...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 90 bp AAAACAATACTTCCTAGACCTGGACGATTGAGAATGGATTCATGGTaGACACTGCCGTCCTCCTCTGCTGACAACTGGAGCTTCTCTTTG +
Preference number: 5 (lower is better)
Translates to: KTILPRPGRLRMDSW*TLPSSSADNWSFSL
Trigger: CAAAGAGAAGCTCCAGTTGTCAGCAGAGGAGGACGGCAGTGTGCACCATGAATCCATTCTCAATCGTCCAGGTCTAGGAAGTATTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 90 bp CTAAAAACAATACTTCCTAGACCTGGACGATTGAGAATGGATTCATaGTGCACACTGCCGTCCTCCTCTGCTGACAACTGGAGCTTCTCT +
Preference number: 5 (lower is better)
Translates to: LKTILPRPGRLRMDS*CTLPSSSADNWSFS
Trigger: AGAGAAGCTCCAGTTGTCAGCAGAGGAGGACGGCAGTGTGCACCATGAATCCATTCTCAATCGTCCAGGTCTAGGAAGTATTGTTTTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCCTAGACCTGGACGATaGAGAATGGATTCATGGTGC +
Preference number: 5 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHPRPGR*RMDSWC
Trigger: GCACCATGAATCCATTCTCAATCGTCCAGGTCTAGG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTCACGGCAGATCATCTTaGAGGCCGTTTTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSHGRSS*RPFSSP
Trigger: GGGAGAGGAAAACGGCCTCAAAGATGATCTGCCGTG...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACCTAGACCTGGACGATaGAGAATGGATTCATGGTGC +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERPRPGR*RMDSWC
Trigger: GCACCATGAATCCATTCTCAATCGTCCAGGTCTAGG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCCACGGCAGATCATCTTaGAGGCCGTTTTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLHGRSS*RPFSSP
Trigger: GGGAGAGGAAAACGGCCTCAAAGATGATCTGCCGTG...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAGGCATGAGCCAAGTGTaGTCAGTTTCTATCGTGGAA +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEGMSQV*SVSIVE
Trigger: TTCCACGATAGAAACTGACAACACTTGGCTCATGCC...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS TCA 90 bp TCTTCATCAGCTGCACCCTCATCAGCCTCTGATGCTCCTTGTCTTTaGAGCAATTCACTGGGCAGTTTAAAACCAAACTCTCTCTTGCTA +
Preference number: 5 (lower is better)
Translates to: SSSAAPSSASDAPCL*SNSLGSLKPNSLLL
Trigger: TAGCAAGAGAGAGTTTGGTTTTAAACTGCCCAGTGAATTGCTTCAAAGACAAGGAGCATCAGAGGCTGATGAGGGTGCAGCTGATGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCAGCCTCTCACACTCTTaGATCTGCCTCCTGGCATTC +
Preference number: 5 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLSLSHS*ICLLAF
Trigger: GAATGCCAGGAGGCAGATCAAAGAGTGTGAGAGGCT...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCGTGGGCCATCTTATTTaGGTGCTTCTCCTGGAGCCT +
Preference number: 5 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLVGHLI*VLLLEP
Trigger: AGGCTCCAGGAGAAGCACCAAAATAAGATGGCCCAC...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATACCTGCTTCCTCCTGTaGATAGCATTCAGAACTTTC +
Preference number: 5 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHTCFLL*IAFRTF
Trigger: GAAAGTTCTGAATGCTATCAACAGGAGGAAGCAGGT...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAACAGTGGGGTTTCAGTTaGAATTTGGGATTGCCATTG +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKEQWGFS*NLGLPL
Trigger: CAATGGCAATCCCAAATTCAAACTGAAACCCCACTG...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATTCAATCTGCTCTCTCTaGAAGATAGGCAGGAATTCT +
Preference number: 5 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHSICSL*KIGRNS
Trigger: AGAATTCCTGCCTATCTTCAAGAGAGAGCAGATTGA...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACTCATGGAGATTTATTaGGATGGGCATAGCCTACCT +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERLMEIY*DGHSLP
Trigger: AGGTAGGCTATGCCCATCCAAATAAATCTCCATGAG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCAAGGTGATTGCAGGGTaGGTTTCTCCTGAGGCCCCC +
Preference number: 5 (lower is better)
Translates to: NFGERSPINSVNHKRKEPKVIAG*VSPEAP
Trigger: GGGGGCCTCAGGAGAAACCAACCCTGCAATCACCTT...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGACAGTGGGGTTTCAGTTaGAATTTGGGATTGCCATTG +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERQWGFS*NLGLPL
Trigger: CAATGGCAATCCCAAATTCAAACTGAAACCCCACTG...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAATTGATGCTGAGAACTTaGGAGAACGCTCACCTATTA +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKELMLRT*ENAHLL
Trigger: TAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAA...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GTTAAAGGGTTAGATGCATTTAAGTTGGGCATCAAGCCGCAGGCCAGGAAAGAAAGGAGAGAAAAAGAATaGGAATTCCCAGGTTACACA +
Preference number: 5 (lower is better)
Translates to: VKGLDAFKLGIKPQARKERREKE*EFPGYT
Trigger: TGTGTAACCTGGGAATTCCAATTCTTTTTCTCTCCT...TTCTTTCCTGGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAACCCTTTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATTTAGATGCATTTAAGTaGGGCATCAAGCCGCAGGCC +
Preference number: 5 (lower is better)
Translates to: ILDAENFGERSPINSVNHLDAFK*GIKPQA
Trigger: GGCCTGCGGCTTGATGCCCAACTTAAATGCATCTAA...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GGGATTACAGGCATGAGCCAAGTGTTGTCAGTTTCTATCGTGGAACCTACACATCCTACAGGATTAGGGTaGCATTCTTATGACTTCATT +
Preference number: 5 (lower is better)
Translates to: GITGMSQVLSVSIVEPTHPTGLG*HSYDFI
Trigger: AATGAAGTCATAAGAATGCAACCCTAATCCTGTAGG...ATGTGTAGGTTCCACGATAGAAACTGACAACACTTGGCTCATGCCTGTAATCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CACAGACTGGATGGCTTCAACAACAGCAGTTTATCAACCGAAGTTTATTTTCTCGGCATGAGCCAAGTGTaGTCAGTTTCTATCGTGGAA +
Preference number: 5 (lower is better)
Translates to: HRLDGFNNSSLSTEVYFLGMSQV*SVSIVE
Trigger: TTCCACGATAGAAACTGACAACACTTGGCTCATGCC...GAGAAAATAAACTTCGGTTGATAAACTGCTGTTGTTGAAGCCATCCAGTCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTGCAACCTCCACCTTTaGGGTTCAAGCAATTCTCTT +
Preference number: 5 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSCNLHL*GSSNSL
Trigger: AAGAGAATTGCTTGAACCCAAAAGGTGGAGGTTGCA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAAGATTTAGATCTCGCTaGGTAGCCTCTTTTAGAAGT +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERRFRSR*VASFRS
Trigger: ACTTCTAAAAGAGGCTACCAAGCGAGATCTAAATCT...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTTCAATCTGCTCTCTCTaGAAGATAGGCAGGAATTCT +
Preference number: 5 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSSICSL*KIGRNS
Trigger: AGAATTCCTGCCTATCTTCAAGAGAGAGCAGATTGA...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp CAGGAAAGAACTCTAGTCTCTACCACTAGGCAAAGTCATAGATCTCAGGAGAGAAATTGTTCATCAGATTaGAGCATCTGTATCCTCCCT +
Preference number: 5 (lower is better)
Translates to: QERTLVSTTRQSHRSQERNCSSD*SICILP
Trigger: AGGGAGGATACAGATGCTCAAATCTGATGAACAATT...TCTCTCCTGAGATCTATGACTTTGCCTAGTGGTAGAGACTAGAGTTCTTTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTGAAGAGACTATATCCTaGATGCTGAGAACTTTGGAG +
Preference number: 5 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGEETIS*MLRTLE
Trigger: CTCCAAAGTTCTCAGCATCAAGGATATAGTCTCTTC...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAGATTTAGATCTCGCTaGGTAGCCTCTTTTAGAAGT +
Preference number: 5 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSRFRSR*VASFRS
Trigger: ACTTCTAAAAGAGGCTACCAAGCGAGATCTAAATCT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTAAACCAAACTCTCTCTaGCTATCTGAGATGTCTTCA +
Preference number: 5 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSKPNSL*LSEMSS
Trigger: TGAAGACATCTCAGATAGCAAGAGAGAGTTTGGTTT...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp GAGACCCCTAGTGGCAAATATCTCCTAAAAAGGGATGAGAGTCAATGTTCAAGTGGAAGAATAAGCCAATaGTTCATCAGATTTGAGCAT +
Preference number: 5 (lower is better)
Translates to: ETPSGKYLLKRDESQCSSGRISQ*FIRFEH
Trigger: ATGCTCAAATCTGATGAACAATTGGCTTATTCTTCC...ACTTGAACATTGACTCTCATCCCTTTTTAGGAGATATTTGCCACTAGGGGTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp TTAGGGGTTAGAGCTCCAACATATGAATTTGACGCAATTCAGTCCACAACAGGTGGAAGAATAAGCCAATaGTTCATCAGATTTGAGCAT +
Preference number: 5 (lower is better)
Translates to: LGVRAPTYEFDAIQSTTGGRISQ*FIRFEH
Trigger: ATGCTCAAATCTGATGAACAATTGGCTTATTCTTCC...ACCTGTTGTGGACTGAATTGCGTCAAATTCATATGTTGGAGCTCTAACCCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp ATCCTTGATGCTGAGAACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAACCAAACTCTCTCTaGCTATCTGAGATGTCTTCA +
Preference number: 5 (lower is better)
Translates to: ILDAENFGERSPINSVNHKPNSL*LSEMSS
Trigger: TGAAGACATCTCAGATAGCAAGAGAGAGTTTGGTTT...ATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTTCTCAGCATCAAGGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS-3UTR CAA 90 bp AACTTTGGAGAACGCTCACCTATTAATTCTGTCAATCATAAAAGAAAAGAACCCCTCATGGAGATTTATTaGGATGGGCATAGCCTACCT +
Preference number: 5 (lower is better)
Translates to: NFGERSPINSVNHKRKEPLMEIY*DGHSLP
Trigger: AGGTAGGCTATGCCCATCCAAATAAATCTCCATGAG...GGGTTCTTTTCTTTTATGATTGACAGAATTAATAGGTGAGCGTTCTCCAAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 72 bp CTGGAGTGCTGCCAGCGGGCCACAGCATCACCCCAATaGTCCAGGCCAAAACTCTCCATCACAGGCTGGTGT +
Preference number: 6 (lower is better)
Translates to: LECCQRATASPQ*SRPKLSITGWC
Trigger: ACACCAGCCTGTGATGGAGAGTTTTGGCCTGGAGCATTGGGGTGATGCTGTGGCCCGCTGGCAGCACTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 72 bp CCCCAATGCTCCAGGCCAAAACTCTCCATCACAGGCTaGTGTCGACCAGCTGCCCAGGCTGTTGAAGCACCT +
Preference number: 6 (lower is better)
Translates to: PQCSRPKLSITG*CRPAAQAVEAP
Trigger: AGGTGCTTCAACAGCCTGGGCAGCTGGTCGACACCAGCCTGTGATGGAGAGTTTTGGCCTGGAGCATTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 72 bp CCAGGTGCTGAGACAGCAAGAACACTTCCAGGGGCGTaGCATCGACCACATCTTCCTCCCACTCCACTTCAT +
Preference number: 6 (lower is better)
Translates to: PGAETARTLPGA*HRPHLPPTPLH
Trigger: ATGAAGTGGAGTGGGAGGAAGATGTGGTCGATGCCACGCCCCTGGAAGTGTTCTTGCTGTCTCAGCACCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 72 bp CCATCACAGGCTGGTGTCGACCAGCTGCCCAGGCTGTaGAAGCACCTGCTTCCTCCTGTTGATAGCATTCAG +
Preference number: 6 (lower is better)
Translates to: PSQAGVDQLPRL*KHLLPPVDSIQ
Trigger: CTGAATGCTATCAACAGGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCTGGTCGACACCAGCCTGTGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS TCA 72 bp CTCTCACACTCTTTGATCTGCCTCCTGGCATTCTTCTaGGCCTGCTCCTTCAGCCTGGTGACCTTCTTGGGG +
Preference number: 6 (lower is better)
Translates to: LSHSLICLLAFF*ACSFSLVTFLG
Trigger: CCCCAAGAAGGTCACCAGGCTGAAGGAGCAGGCTCAGAAGAATGCCAGGAGGCAGATCAAAGAGTGTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS TCA 72 bp CATCACAGGCTGGTGTCGACCAGCTGCCCAGGCTGTTaGAGCACCTGCTTCCTCCTGTTGATAGCATTCAGA +
Preference number: 6 (lower is better)
Translates to: HHRLVSTSCPGC*STCFLLLIAFR
Trigger: TCTGAATGCTATCAACAGGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCTGGTCGACACCAGCCTGTGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 72 bp CTTCCTAGACCTGGACGATTGAGAATGGATTCATGGTaGACACTGCCGTCCTCCTCTGCTGACAACTGGAGC +
Preference number: 6 (lower is better)
Translates to: LPRPGRLRMDSW*TLPSSSADNWS
Trigger: GCTCCAGTTGTCAGCAGAGGAGGACGGCAGTGTGCACCATGAATCCATTCTCAATCGTCCAGGTCTAGGAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 90 bp TGGTGCACACTGCCGTCCTCCTCTGCTGACAACTGGAGCTTCTCTTaGAAGTCCCCTGAGAACGAGTCTTCCTCTTCCTCTCTGAACACT +
Preference number: 6 (lower is better)
Translates to: WCTLPSSSADNWSFS*KSPENESSSSSLNT
Trigger: AGTGTTCAGAGAGGAAGAGGAAGACTCGTTCTCAGGGGACTTCAAAGAGAAGCTCCAGTTGTCAGCAGAGGAGGACGGCAGTGTGCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS TCA 72 bp CTCTCCCTCTTCATCAGCTGCACCCTCATCAGCCTCTaGTGCTCCTTGTCTTTGAAGCAATTCACTGGGCAG +
Preference number: 6 (lower is better)
Translates to: LSLFISCTLISL*CSLSLKQFTGQ
Trigger: CTGCCCAGTGAATTGCTTCAAAGACAAGGAGCATCAGAGGCTGATGAGGGTGCAGCTGATGAAGAGGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 72 bp CCTTGTCCAGGAGAGCAACACATTCATTCTGCTCCCTaGTGGCAGCAGCATCCAGTGGAGTCTGTAAGTCAT +
Preference number: 6 (lower is better)
Translates to: PCPGEQHIHSAP*WQQHPVESVSH
Trigger: ATGACTTACAGACTCCACTGGATGCTGCTGCCAGCAGGGAGCAGAATGAATGTGTTGCTCTCCTGGACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 72 bp ATGTGCCAGGAGCAGAAGCATTTGAAGGGGATGATCTaGAGAAGGTACCCTTGGAAGAAGAGAGAGTCCCGG +
Preference number: 6 (lower is better)
Translates to: MCQEQKHLKGMI*RRYPWKKRESR
Trigger: CCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCAGATCATCCCCTTCAAATGCTTCTGCTCCTGGCACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 90 bp CAAAACTCTCCATCACAGGCTGGTGTCGACCAGCTGCCCAGGCTGTaGAAGCACCTGCTTCCTCCTGTTGATAGCATTCAGAACTTTCTT +
Preference number: 6 (lower is better)
Translates to: QNSPSQAGVDQLPRL*KHLLPPVDSIQNFL
Trigger: AAGAAAGTTCTGAATGCTATCAACAGGAGGAAGCAGGTGCTTCAACAGCCTGGGCAGCTGGTCGACACCAGCCTGTGATGGAGAGTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 72 bp ATACTTCCTAGACCTGGACGATTGAGAATGGATTCATaGTGCACACTGCCGTCCTCCTCTGCTGACAACTGG +
Preference number: 6 (lower is better)
Translates to: ILPRPGRLRMDS*CTLPSSSADNW
Trigger: CCAGTTGTCAGCAGAGGAGGACGGCAGTGTGCACCATGAATCCATTCTCAATCGTCCAGGTCTAGGAAGTAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 72 bp GAAGCATTTGAAGGGGATGATCTGGAGAAGGTACCCTaGGAAGAAGAGAGAGTCCCGGATTCCTCCTTGCTG +
Preference number: 6 (lower is better)
Translates to: EAFEGDDLEKVP*EEERVPDSSLL
Trigger: CAGCAAGGAGGAATCCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCAGATCATCCCCTTCAAATGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 72 bp TACCCTTGGAAGAAGAGAGAGTCCCGGATTCCTCCTTaGTGTAGGTGTGGGCCATCTTATTTTGGTGCTTCT +
Preference number: 6 (lower is better)
Translates to: YPWKKRESRIPP*CRCGPSYFGAS
Trigger: AGAAGCACCAAAATAAGATGGCCCACACCTACAGCAAGGAGGAATCCGGGACTCTCTCTTCTTCCAAGGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CCA 72 bp AAGCATTTGAAGGGGATGATCTGGAGAAGGTACCCTTaGAAGAAGAGAGAGTCCCGGATTCCTCCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: KHLKGMIWRRYP*KKRESRIPPCC
Trigger: ACAGCAAGGAGGAATCCGGGACTCTCTCTTCTTCCAAGGGTACCTTCTCCAGATCATCCCCTTCAAATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 72 bp AGCATTCAGAACTTTCTTCCTGGGACCCAGCTGCATTaGTATGCTCTGAAGGTCCTCATCAGAGCAGAGCAG +
Preference number: 6 (lower is better)
Translates to: SIQNFLPGTQLH*YALKVLIRAEQ
Trigger: CTGCTCTGCTCTGATGAGGACCTTCAGAGCATACAAATGCAGCTGGGTCCCAGGAAGAAAGTTCTGAATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 90 bp GATATCCTGTTCCTTCTAAAAACAATACTTCCTAGACCTGGACGATaGAGAATGGATTCATGGTGCACACTGCCGTCCTCCTCTGCTGAC +
Preference number: 6 (lower is better)
Translates to: DILFLLKTILPRPGR*RMDSWCTLPSSSAD
Trigger: GTCAGCAGAGGAGGACGGCAGTGTGCACCATGAATCCATTCTCAATCGTCCAGGTCTAGGAAGTATTGTTTTTAGAAGGAACAGGATATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS GCA 72 bp TCATCAGAGCAGAGCAGCAGAGCTTCTAGATCAATCTaGTCTCTCTTGAAGATAGGCAGGAATTCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: SSEQSSRASRSI*SLLKIGRNSSR
Trigger: CCTGGAAGAATTCCTGCCTATCTTCAAGAGAGAGCAGATTGATCTAGAAGCTCTGCTGCTCTGCTCTGATGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 72 bp TTCCTTCTAAAAACAATACTTCCTAGACCTGGACGATaGAGAATGGATTCATGGTGCACACTGCCGTCCTCC +
Preference number: 6 (lower is better)
Translates to: FLLKTILPRPGR*RMDSWCTLPSS
Trigger: GGAGGACGGCAGTGTGCACCATGAATCCATTCTCAATCGTCCAGGTCTAGGAAGTATTGTTTTTAGAAGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 90 bp TTCCCCACCTGTTCTGCTGTATCTTTGTTCTTCTTGAACTTGATCTaGAAAGTGTCTTTAATGCCCTTAGATAGTGACCCGAATGTGCCA +
Preference number: 6 (lower is better)
Translates to: FPTCSAVSLFFLNLI*KVSLMPLDSDPNVP
Trigger: TGGCACATTCGGGTCACTATCTAAGGGCATTAAAGACACTTTCAAGATCAAGTTCAAGAAGAACAAAGATACAGCAGAACAGGTGGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 90 bp CCTTCCTTCCCCACCTGTTCTGCTGTATCTTTGTTCTTCTTGAACTaGATCTTGAAAGTGTCTTTAATGCCCTTAGATAGTGACCCGAAT +
Preference number: 6 (lower is better)
Translates to: PSFPTCSAVSLFFLN*ILKVSLMPLDSDPN
Trigger: ATTCGGGTCACTATCTAAGGGCATTAAAGACACTTTCAAGATCAAGTTCAAGAAGAACAAAGATACAGCAGAACAGGTGGGGAAGGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2
CDS CAA 72 bp CCCACCTGTTCTGCTGTATCTTTGTTCTTCTTGAACTaGATCTTGAAAGTGTCTTTAATGCCCTTAGATAGT +
Preference number: 6 (lower is better)
Translates to: PTCSAVSLFFLN*ILKVSLMPLDS
Trigger: ACTATCTAAGGGCATTAAAGACACTTTCAAGATCAAGTTCAAGAAGAACAAAGATACAGCAGAACAGGTGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311620.7
ENST00000639229.2