RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALMS1-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000230002

Ensembl transcript IDs: ENST00000441587.3

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCAAAATATCTCTTTGGGAGGCATTTACTACCCGTCAAGAACCACTaGCTTCCACAATCTAGTCTTCTCCCTTTCACTCTCACTCTCCAA +
Preference number: 5 (lower is better)
Translates to: PKYLFGRHLLPVKNH*LPQSSLLPFTLTLQ
Trigger: TTGGAGAGTGAGAGTGAAAGGGAGAAGACTAGATTGTGGAAGGCAGTGGTTCTTGACGGGTAGTAAATGCCTCCCAAAGAGATATTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 90 bp CTTACTCAGATATTTAATTCAATACCTCTTTCTCAGGTTCTGTGTTaGCCATTCTGCTTTGTCTCCCTGGCTCTTATCCCACCATCTGAC +
Preference number: 5 (lower is better)
Translates to: LTQIFNSIPLSQVLC*PFCFVSLALIPPSD
Trigger: GTCAGATGGTGGGATAAGAGCCAGGGAGACAAAGCAGAATGGTCAACACAGAACCTGAGAAAGAGGTATTGAATTAAATATCTGAGTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS GCA 90 bp TGGTATGAGTTAACATTACAAGTATTGAGACAAATCAACATAATGTaGCTCCTGACAAGCATGAAAAGCACATCACTTCTGTGGCTTTCC +
Preference number: 5 (lower is better)
Translates to: WYELTLQVLRQINIM*LLTSMKSTSLLWLS
Trigger: GGAAAGCCACAGAAGTGATGTGCTTTTCATGCTTGTCAGGAGGCACATTATGTTGATTTGTCTCAATACTTGTAATGTTAACTCATACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 90 bp TTTTCATCAACATTAATATCTACAGGGACATTCAAAAGCTGTATGTaGCAAGGGACAACTCTTCATTGTGTGGAACTGTCTTGTACATTA +
Preference number: 5 (lower is better)
Translates to: FSSTLISTGTFKSCM*QGTTLHCVELSCTL
Trigger: TAATGTACAAGACAGTTCCACACAATGAAGAGTTGTCCCTTGTCACATACAGCTTTTGAATGTCCCTGTAGATATTAATGTTGATGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS GCA 72 bp CTCTTTGGGAGGCATTTACTACCCGTCAAGAACCACTaGCTTCCACAATCTAGTCTTCTCCCTTTCACTCTC +
Preference number: 6 (lower is better)
Translates to: LFGRHLLPVKNH*LPQSSLLPFTL
Trigger: GAGAGTGAAAGGGAGAAGACTAGATTGTGGAAGGCAGTGGTTCTTGACGGGTAGTAAATGCCTCCCAAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CAA 72 bp CACAGACAAACCAGAGTCTACCCAAAGGAAGGCAACTaGCTTGCTGAGGGATCTGGAAATATGAACGCAAGA +
Preference number: 6 (lower is better)
Translates to: HRQTRVYPKEGN*LAEGSGNMNAR
Trigger: TCTTGCGTTCATATTTCCAGATCCCTCAGCAAGCAAGTTGCCTTCCTTTGGGTAGACTCTGGTTTGTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS GCA 72 bp CCCTTTCCTTTCACACACTTTACCTCAGCAACTGTGTaGATGCTATTTCTGTCTGGAATGCTCTTGTCACTG +
Preference number: 6 (lower is better)
Translates to: PFPFTHFTSATV*MLFLSGMLLSL
Trigger: CAGTGACAAGAGCATTCCAGACAGAAATAGCATGCACACAGTTGCTGAGGTAAAGTGTGTGAAAGGAAAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CAA 72 bp TACCTCTTTCTCAGGTTCTGTGTTGACCATTCTGCTTaGTCTCCCTGGCTCTTATCCCACCATCTGACATTT +
Preference number: 6 (lower is better)
Translates to: YLFLRFCVDHSA*SPWLLSHHLTF
Trigger: AAATGTCAGATGGTGGGATAAGAGCCAGGGAGACAAAGCAGAATGGTCAACACAGAACCTGAGAAAGAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CCA 72 bp CTCAGGTTCTGTGTTGACCATTCTGCTTTGTCTCCCTaGCTCTTATCCCACCATCTGACATTTATTTTACTT +
Preference number: 6 (lower is better)
Translates to: LRFCVDHSALSP*LLSHHLTFILL
Trigger: AAGTAAAATAAATGTCAGATGGTGGGATAAGAGCCAGGGAGACAAAGCAGAATGGTCAACACAGAACCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 72 bp AACCAGAGTCTACCCAAAGGAAGGCAACTTGCTTGCTaGGGGATCTGGAAATATGAACGCAAGAAAATAATT +
Preference number: 6 (lower is better)
Translates to: NQSLPKGRQLAC*GIWKYERKKII
Trigger: AATTATTTTCTTGCGTTCATATTTCCAGATCCCTCAGCAAGCAAGTTGCCTTCCTTTGGGTAGACTCTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CAA 90 bp TTTACCTCAGCAACTGTGTGCATGCTATTTCTGTCTGGAATGCTCTaGTCACTGTTAACTGCCTTACTTTCTCACCTTACTCAGATATTT +
Preference number: 6 (lower is better)
Translates to: FTSATVCMLFLSGML*SLLTALLSHLTQIF
Trigger: AAATATCTGAGTAAGGTGAGAAAGTAAGGCAGTTAACAGTGACAAGAGCATTCCAGACAGAAATAGCATGCACACAGTTGCTGAGGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 72 bp TCTATTTTGTTCAGTGGTGTGTCCTCAGGCTATAGATaGGGATGGCGCATATCAGGCATTCAATATGTATTT +
Preference number: 6 (lower is better)
Translates to: SILFSGVSSGYR*GWRISGIQYVF
Trigger: AAATACATATTGAATGCCTGATATGCGCCATCCTCATCTATAGCCTGAGGACACACCACTGAACAAAATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 72 bp ATATTTAATTCAATACCTCTTTCTCAGGTTCTGTGTTaGCCATTCTGCTTTGTCTCCCTGGCTCTTATCCCA +
Preference number: 6 (lower is better)
Translates to: IFNSIPLSQVLC*PFCFVSLALIP
Trigger: TGGGATAAGAGCCAGGGAGACAAAGCAGAATGGTCAACACAGAACCTGAGAAAGAGGTATTGAATTAAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CAA 90 bp AAGCTGTATGTGACAAGGGACAACTCTTCATTGTGTGGAACTGTCTaGTACATTATAGAAATAGTAACATACCTGACACCTATCTACTGC +
Preference number: 6 (lower is better)
Translates to: KLYVTRDNSSLCGTV*YIIEIVTYLTPIYC
Trigger: GCAGTAGATAGGTGTCAGGTATGTTACTATTTCTATAATGTACAAGACAGTTCCACACAATGAAGAGTTGTCCCTTGTCACATACAGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 72 bp ACATTAATATCTACAGGGACATTCAAAAGCTGTATGTaGCAAGGGACAACTCTTCATTGTGTGGAACTGTCT +
Preference number: 6 (lower is better)
Translates to: TLISTGTFKSCM*QGTTLHCVELS
Trigger: AGACAGTTCCACACAATGAAGAGTTGTCCCTTGTCACATACAGCTTTTGAATGTCCCTGTAGATATTAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CAA 72 bp GTGACAAGGGACAACTCTTCATTGTGTGGAACTGTCTaGTACATTATAGAAATAGTAACATACCTGACACCT +
Preference number: 6 (lower is better)
Translates to: VTRDNSSLCGTV*YIIEIVTYLTP
Trigger: AGGTGTCAGGTATGTTACTATTTCTATAATGTACAAGACAGTTCCACACAATGAAGAGTTGTCCCTTGTCAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS TCA 72 bp GTCAATCATAAGATGGTGAAACACAAGATGGTTGAATaGCAGTATAGTGAAGTACTCAAAATAGGTGTGAGA +
Preference number: 6 (lower is better)
Translates to: VNHKMVKHKMVE*QYSEVLKIGVR
Trigger: TCTCACACCTATTTTGAGTACTTCACTATACTGTCATTCAACCATCTTGTGTTTCACCATCTTATGATTGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS GCA 72 bp TTAACATTACAAGTATTGAGACAAATCAACATAATGTaGCTCCTGACAAGCATGAAAAGCACATCACTTCTG +
Preference number: 6 (lower is better)
Translates to: LTLQVLRQINIM*LLTSMKSTSLL
Trigger: CAGAAGTGATGTGCTTTTCATGCTTGTCAGGAGGCACATTATGTTGATTTGTCTCAATACTTGTAATGTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CCA 72 bp AAAGCTGTATGTGACAAGGGACAACTCTTCATTGTGTaGAACTGTCTTGTACATTATAGAAATAGTAACATA +
Preference number: 6 (lower is better)
Translates to: KAVCDKGQLFIV*NCLVHYRNSNI
Trigger: TATGTTACTATTTCTATAATGTACAAGACAGTTCCACACAATGAAGAGTTGTCCCTTGTCACATACAGCTTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000441587.3
CDS CCA 72 bp AAAACACACAAACCAGCAGATACCACCTTAACTAAGTaGTATGAGTTAACATTACAAGTATTGAGACAAATC +
Preference number: 6 (lower is better)
Translates to: KTHKPADTTLTK*YELTLQVLRQI
Trigger: GATTTGTCTCAATACTTGTAATGTTAACTCATACCACTTAGTTAAGGTGGTATCTGCTGGTTTGTGTGTTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441587.3