Pregenerated sensors for ALKAL1 (Homo sapiens)

Ensembl gene IDs: ENSG00000196711

Ensembl transcript IDs: ENST00000358543.9, ENST00000523939.1

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	CGGCTACGCGGCCGGCCGCAGTCTTCACCGCGCGCCTaGCCTTGTCTACGTCCCGGGGGTCGGCTGGAGCTG	+
Preference number: 6 (lower is better) Translates to: RLRGRPQSSPRA*PCLRPGGRLEL Trigger: CAGCTCCAGCCGACCCCCGGGACGTAGACAAGGGCAGGCGCGCGGTGAAGACTGCGGCCGGCCGCGTAGCCG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000358543.9
CDS CCA 72 bp	AGTCTCTTGGGAATATTTCTGCGCTCCGGGAGCCGCTaGGAGTCCGGCCGGCCCCGGCCGCGGGGAGGAAAA	+
Preference number: 6 (lower is better) Translates to: SLLGIFLRSGSR*ESGRPRPRGGK Trigger: TTTTCCTCCCCGCGGCCGGGGCCGGCCGGACTCCCAGCGGCTCCCGGAGCGCAGAAATATTCCCAAGAGACT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000358543.9 ENST00000523939.1
CDS CCA 72 bp	CACATCTTTTGTAATAAGCTGGCGTTGAGCACTCCCTaGTATTGTAATAGAGTCGGTGGAAATGTTTGCTGC	+
Preference number: 6 (lower is better) Translates to: HIFCNKLALSTP*YCNRVGGNVCC Trigger: GCAGCAAACATTTCCACCGACTCTATTACAATACCAGGGAGTGCTCAACGCCAGCTTATTACAAAAGATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358543.9
CDS CCA 72 bp	ATTCTTAGGAAATGTAAGCTGGCGTTGAGCACTCCCTaGTATTGTAATAGAGTCGGTGGAAATGTTTGCTGC	+
Preference number: 6 (lower is better) Translates to: ILRKCKLALSTP*YCNRVGGNVCC Trigger: GCAGCAAACATTTCCACCGACTCTATTACAATACCAGGGAGTGCTCAACGCCAGCTTACATTTCCTAAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523939.1
CDS TCA 72 bp	GTAATAGAGTCGGTGGAAATGTTTGCTGCATTCTGGTaGAAATGTGACCGGCCCTGTGAAATGCTTTATGAA	+
Preference number: 6 (lower is better) Translates to: VIESVEMFAAFW*KCDRPCEMLYE Trigger: TTCATAAAGCATTTCACAGGGCCGGTCACATTTTCACCAGAATGCAGCAAACATTTCCACCGACTCTATTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000358543.9 ENST00000523939.1

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