RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALDH1A1 (Homo sapiens)

Ensembl gene IDs: ENSG00000165092

Ensembl transcript IDs: ENST00000297785.8, ENST00000376939.5, ENST00000419959.5, ENST00000446946.1, ENST00000482210.5, ENST00000493113.1, ENST00000493311.1

Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGAGATGCTTAGCTATTaGAGAGCTTCTCTCCACTCT +
Preference number: 2 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKEMLSY*RASLHS
Trigger: AGAGTGGAGAGAAGCTCTTCAATAGCTAAGCATCTC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
3UTR-3UTR GCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTGTGACTGTAAGGAGATaGTTAGCTATTGAAGAGCTT +
Preference number: 2 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIVTVRR*LAIEEL
Trigger: AAGCTCTTCAATAGCTAAGCATCTCCTTACAGTCAC...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
3UTR-3UTR GCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGGGAAAGAAGCTAAATaGAACTGTTCCTTTTCTATA +
Preference number: 2 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSGKEAK*NCSFSI
Trigger: TATAGAAAAGGAACAGTTGCATTTAGCTTCTTTCCC...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp CCCGCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAACACGGGGATCCAATCTaGAAAGCCTGTCTTGCGGCC +
Preference number: 4 (lower is better)
Translates to: PAQHSFEQTHHKLILPQKHGDPI*KACLAA
Trigger: GGCCGCAAGACAGGCTTTTCAGATTGGATCCCCGTG...TTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGCGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR TCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGCACGGGGATCCAATCTaGAAAGCCTGTCTTGCGGCC +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKHGDPI*KACLAA
Trigger: GGCCGCAAGACAGGCTTTTCAGATTGGATCCCCGTG...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCCCACGTGGAGAGCAGTaGGAGGAGTTTGCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: AQHSFEQTHHKLILPQKSPRGEQ*EEFALL
Trigger: CAGCAGAGCAAACTCCTCTCACTGCTCTCCACGTGG...GGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR TCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGTCTGAGGGCCTTGAGTaGCTCCTGGGGTCAGAGGAT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKSEGLE*LLGSED
Trigger: ATCCTCTGACCCCAGGAGTCACTCAAGGCCCTCAGA...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp TCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCGGCTCCTGGAACACAGGTaGCTGGCTCAGCAATTTGGT +
Preference number: 4 (lower is better)
Translates to: SFEQTHHKLILPQKSWMRLLEHR*LAQQFG
Trigger: ACCAAATTGCTGAGCCAGTCACCTGTGTTCCAGGAG...CCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR TCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTCCACGTGGAGAGCAGTaGGAGGAGTTTGCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSPRGEQ*EEFALL
Trigger: CAGCAGAGCAAACTCCTCTCACTGCTCTCCACGTGG...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTTCCCGGCAGCTTCTTTaGTCAACTTGCCAACCTCTG +
Preference number: 4 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVSRQLL*STCQPL
Trigger: CAGAGGTTGGCAAGTTGATCAAAGAAGCTGCCGGGA...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGCACCCACACTGTTCCTaGCTGCAGAGCAGAGGAGAT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKHPHCS*LQSRGD
Trigger: ATCTCCTCTGCTCTGCAGGCAGGAACAGTGTGGGTG...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp TCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCGGGGTATTGTACGGCCCTaGATCTTGTCAGCCCAACCT +
Preference number: 4 (lower is better)
Translates to: SFEQTHHKLILPQKSWMRGIVRP*ILSAQP
Trigger: AGGTTGGGCTGACAAGATCCAGGGCCGTACAATACC...CCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR TCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGCTCCTGGAACACAGGTaGCTGGCTCAGCAATTTGGT +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKLLEHR*LAQQFG
Trigger: ACCAAATTGCTGAGCCAGTCACCTGTGTTCCAGGAG...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp TCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCGGGCAGTGAGAGGAGTTTaGTCTGCTGGTTTGACAACC +
Preference number: 4 (lower is better)
Translates to: SFEQTHHKLILPQKSWMRAVRGV*SAGLTT
Trigger: GGTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGC...CCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR GCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTAGAAATGGCTGCCCCTaGTGTAGGCCCATAACCAGG +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSRNGCP*CRPITR
Trigger: CCTGGTTATGGGCCTACAGCAGGGGCAGCCATTTCT...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGTGAGAAGAAATGGCTaGCCCTGCTGTAGGCCCATA +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKVRRNG*PCCRPI
Trigger: TATGGGCCTACAGCAGGGGCAGCCATTTCTTCTCAC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGGTATTGTACGGCCCTaGATCTTGTCAGCCCAACCT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKGIVRP*ILSAQP
Trigger: AGGTTGGGCTGACAAGATCCAGGGCCGTACAATACC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp CCCGCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATTTTCCACCATTCATTaGCTCCATTGTCGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: PAQHSFEQTHHKLILPQKFSTIH*LHCRQQ
Trigger: CTGCTGGCGACAATGGAGTCAATGAATGGTGGAAAA...TTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGCGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR GCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTCAGGTAAGTCTGGCGTaGCTGAGGATGACATTTCTG +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIQVSLA*LRMTFL
Trigger: CAGAAATGTCATCCTCAGGCACGCCAGACTTACCTG...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp GCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCCAGGTAAGTCTGGCGTaGCTGAGGATGACATTTCTG +
Preference number: 4 (lower is better)
Translates to: AQHSFEQTHHKLILPQKSQVSLA*LRMTFL
Trigger: CAGAAATGTCATCCTCAGGCACGCCAGACTTACCTG...GGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR GCA 90 bp CCCGCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAAGTTTCCACAGCTCAGTaGAGGCCCTATCTTCCAAAT +
Preference number: 4 (lower is better)
Translates to: PAQHSFEQTHHKLILPQKVSTAQ*RPYLPN
Trigger: ATTTGGAAGATAGGGCCTGCACTGAGCTGTGGAAAC...TTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGCGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR GCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGCACACTGTTCCTGCCTaGAGAGCAGAGGAGATTGTT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKHTVPA*RAEEIV
Trigger: AACAATCTCCTCTGCTCTGCAGGCAGGAACAGTGTG...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp TCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCGGTGGAACACAGGTGACTaGCTCAGCAATTTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: SFEQTHHKLILPQKSWMRWNTGD*LSNLVL
Trigger: CAGAACCAAATTGCTGAGCCAGTCACCTGTGTTCCA...CCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCCTTGAGTGACTCCTaGGGTCAGAGGATTTCCAAG +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSALSDS*GQRISK
Trigger: CTTGGAAATCCTCTGACCCCAGGAGTCACTCAAGGC...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTTTGTCTATATCCATGTaGGAAGAAATGGCTGCCCCT +
Preference number: 4 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVLSISM*EEMAAP
Trigger: AGGGGCAGCCATTTCTTCTCACATGGATATAGACAA...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTCTTGCCAACCTCTGTTaGTCCTGTGAAGGCTACTTT +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAILANLC*SCEGYF
Trigger: AAAGTAGCCTTCACAGGATCAACAGAGGTTGGCAAG...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTGAGATGCTTAGCTATTaGAGAGCTTCTCTCCACTCT +
Preference number: 4 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVEMLSY*RASLHS
Trigger: AGAGTGGAGAGAAGCTCTTCAATAGCTAAGCATCTC...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGCTTGTCAGCCCAACCTaGACAGTAGCGCAATGTTTT +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKLVSPT*TVAQCF
Trigger: AAAACATTGCGCTACTGTGCAGGTTGGGCTGACAAG...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGTTTCCACAGCTCAGTaGAGGCCCTATCTTCCAAAT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKVSTAQ*RPYLPN
Trigger: ATTTGGAAGATAGGGCCTGCACTGAGCTGTGGAAAC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTGAGAGGAGTTTaGTCTGCTGGTTTGACAACC +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSAVRGV*SAGLTT
Trigger: GGTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGC...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGCACAAAAATCCTGGATaGGGCTATACAACACTGGCC +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKHKNPG*GYTTLA
Trigger: GGCCAGTGTTGTATAGCCGCATCCAGGATTTTTGTG...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCACAAAAATCCTGGATaGGGCTATACAACACTGGCC +
Preference number: 4 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMHKNPG*GYTTLA
Trigger: GGCCAGTGTTGTATAGCCGCATCCAGGATTTTTGTG...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTGGAACACAGGTGACTaGCTCAGCAATTTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIWNTGD*LSNLVL
Trigger: CAGAACCAAATTGCTGAGCCAGTCACCTGTGTTCCA...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGAATCTTCAAATCGGTaGGTAGGACAGGTAAGTCTG +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKESSNR*VGQVSL
Trigger: CAGACTTACCTGTCCTACTCACCGATTTGAAGATTC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCGAATCTTCAAATCGGTaGGTAGGACAGGTAAGTCTG +
Preference number: 4 (lower is better)
Translates to: AQHSFEQTHHKLILPQKSESSNR*VGQVSL
Trigger: CAGACTTACCTGTCCTACTCACCGATTTGAAGATTC...GGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR TCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTTTTTCCACCATTCATTaGCTCCATTGTCGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSFSTIH*LHCRQQ
Trigger: CTGCTGGCGACAATGGAGTCAATGAATGGTGGAAAA...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp CCCGCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAAAGTAGCGCAATGTTTTaGTGCAGCCTGCTAAATCAT +
Preference number: 4 (lower is better)
Translates to: PAQHSFEQTHHKLILPQKSSAMF*CSLLNH
Trigger: ATGATTTAGCAGGCTGCATCAAAACATTGCGCTACT...TTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGCGGG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR GCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTCATCAGCTAACACAATaGAAGGGCTCTTTCCTCCAA +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIHQLTQ*KGSFLQ
Trigger: TTGGAGGAAAGAGCCCTTGCATTGTGTTAGCTGATG...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTGAATACCCCATGGTGTaGAAATTCAACAGCATTGTC +
Preference number: 4 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVEYPMV*KFNSIV
Trigger: GACAATGCTGTTGAATTTGCACACCATGGGGTATTC...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGAGGAGTTTGCTCTGCTaGTTTGACAACCACTGTGTT +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKRSLLC*FDNHCV
Trigger: AACACAGTGGTTGTCAAACCAGCAGAGCAAACTCCT...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGAGGAGTTTGCTCTGCTaGTTTGACAACCACTGTGTT +
Preference number: 4 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMRSLLC*FDNHCV
Trigger: AACACAGTGGTTGTCAAACCAGCAGAGCAAACTCCT...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTATTAAAGATGCCACGTaGAGAGCAGTGAGAGGAGTT +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIIKDAT*RAVRGV
Trigger: AACTCCTCTCACTGCTCTCCACGTGGCATCTTTAAT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp GCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCATTAAAGATGCCACGTaGAGAGCAGTGAGAGGAGTT +
Preference number: 4 (lower is better)
Translates to: AQHSFEQTHHKLILPQKSIKDAT*RAVRGV
Trigger: AACTCCTCTCACTGCTCTCCACGTGGCATCTTTAAT...GGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR TCA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTTTTCTTGCCACTCACTaGATCATGCCATTCATTGTT +
Preference number: 4 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVFLATH*IMPFIV
Trigger: AACAATGAATGGCATGATTCAGTGAGTGGCAAGAAA...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTAGTAGCGCAATGTTTTaGTGCAGCCTGCTAAATCAT +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAISSAMF*CSLLNH
Trigger: ATGATTTAGCAGGCTGCATCAAAACATTGCGCTACT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAATTCCAAGGAATaGTTTGGCCACATACACCAA +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKGNSKE*FGHIHQ
Trigger: TTGGTGTATGTGGCCAAATCATTCCTTGGAATTTCC...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp CAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGGGAAATTCCAAGGAATaGTTTGGCCACATACACCAA +
Preference number: 4 (lower is better)
Translates to: QHSFEQTHHKLILPQKSWGNSKE*FGHIHQ
Trigger: TTGGTGTATGTGGCCAAATCATTCCTTGGAATTTCC...CCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR GCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGAGACAGGAAATTTCTTaGCACTCACTGAATCATGCC +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKRQEIS*HSLNHA
Trigger: GGCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCT...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp CAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGAGACAGGAAATTTCTTaGCACTCACTGAATCATGCC +
Preference number: 4 (lower is better)
Translates to: QHSFEQTHHKLILPQKSWRQEIS*HSLNHA
Trigger: GGCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCT...CCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTACCTCTGTATATTCATaGAAACCGTACTCTCCCAGT +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAITSVYS*KPYSPS
Trigger: ACTGGGAGAGTACGGTTTCCATGAATATACAGAGGT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTCCTCTGTTGATCCTGTaGAGGCTACTTTGTCTATAT +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSPLLIL*RLLCLY
Trigger: ATATAGACAAAGTAGCCTTCACAGGATCAACAGAGG...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTCTTTATGAGTTCTTCTaGGAGATTTTCACTGTGACT +
Preference number: 4 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVLYEFF*EIFTVT
Trigger: AGTCACAGTGAAAATCTCTCAGAAGAACTCATAAAG...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTTTGACAAGCAGACATaGCATCCTAGGAAACTTTTC +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIFDKQT*HPRKLF
Trigger: GAAAAGTTTCCTAGGATGTCATGTCTGCTTGTCAAA...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR TCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGAGGGATTATTTCTTTTaGCAAGCAGACATGACATCC +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKRDYFF*QADMTS
Trigger: GGATGTCATGTCTGCTTGTCAAAAGAAATAATCCCT...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTAACTTCATGATTTGCTaGACTGGTCCAAAAATCTCC +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAINFMIC*TGPKIS
Trigger: GGAGATTTTTGGACCAGTGCAGCAAATCATGAAGTT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGTTCCAAGGAATGATTTaGCCACATACACCAATAGGT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKFQGMI*PHTPIG
Trigger: ACCTATTGGTGTATGTGGCCAAATCATTCCTTGGAA...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp GCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTTCCAAGGAATGATTTaGCCACATACACCAATAGGT +
Preference number: 4 (lower is better)
Translates to: AQHSFEQTHHKLILPQKSFQGMI*PHTPIG
Trigger: ACCTATTGGTGTATGTGGCCAAATCATTCCTTGGAA...GGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CCA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTCATGATTTGCTGCACTaGTCCAAAAATCTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIHDLLH*SKNLLF
Trigger: AAAGAGGAGATTTTTGGACCAGTGCAGCAAATCATG...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR GCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGTGACTGTAAGGAGATaGTTAGCTATTGAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSVTVRR*LAIEEL
Trigger: AAGCTCTTCAATAGCTAAGCATCTCCTTACAGTCAC...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGAAAATTTCCATCAATTaGTATTGTACGGCCCTGGAT +
Preference number: 4 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKKISIN*YCTALD
Trigger: ATCCAGGGCCGTACAATACCAATTGATGGAAATTTT...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGACTTTATAACTACTaGGAACAGAGCAATTTACTC +
Preference number: 4 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKGLYNY*EQSNLL
Trigger: GAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCC...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CCA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTCAGAGGAGATTGTTATaGCTTTATCAATGTCTTTGG +
Preference number: 4 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSQRRLL*LYQCLW
Trigger: CCAAAGACATTGATAAAGCCATAACAATCTCCTCTG...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS GCA 90 bp CTGGCGTGCCTGAGGATGACATTTCTGATTCGGCTCCTCCTGCAATaGTGTGAAGGAGAAAGCTGTAGGTTCCCTGGGAGTCTGCAGATC +
Preference number: 5 (lower is better)
Translates to: LACLRMTFLIRLLLQ*CEGESCRFPGSLQI
Trigger: GATCTGCAGACTCCCAGGGAACCTACAGCTTTCTCCTTCACAGCATTGCAGGAGGAGCCGAATCAGAAATGTCATCCTCAGGCACGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000419959.5
CDS GCA 90 bp GCCTCTTTTATTAAAGATGCCACGTGGAGAGCAGTGAGAGGAGTTTaGTCTGCTGGTTTGACAACCACTGTGTTTCCACAGCTCAGTGCA +
Preference number: 5 (lower is better)
Translates to: ASFIKDATWRAVRGV*SAGLTTTVFPQLSA
Trigger: TGCACTGAGCTGTGGAAACACAGTGGTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGCTCTCCACGTGGCATCTTTAATAAAAGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000482210.5
CDS-3UTR CAA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGTACGGCCCTGGATCTaGTCAGCCCAACCTGCACAG +
Preference number: 5 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKVRPWI*SAQPAQ
Trigger: CTGTGCAGGTTGGGCTGACAAGATCCAGGGCCGTAC...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGGTACGGCCCTGGATCTaGTCAGCCCAACCTGCACAG +
Preference number: 5 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMVRPWI*SAQPAQ
Trigger: CTGTGCAGGTTGGGCTGACAAGATCCAGGGCCGTAC...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS GCA 90 bp TCCTGTAGTGGTCAGGGCTTGATGTCTCCAGTGACTGGCAGAGACTaGATTCTTATGCACTCAGCAGACAGTAAATATGTTATACAGTCT +
Preference number: 5 (lower is better)
Translates to: SCSGQGLMSPVTGRD*ILMHSADSKYVIQS
Trigger: AGACTGTATAACATATTTACTGTCTGCTGAGTGCATAAGAATGCAGTCTCTGCCAGTCACTGGAGACATCAAGCCCTGACCACTACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000493311.1
CDS-3UTR CAA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGTCAATCTGAGGGCCTaGAGTGACTCCTGGGGTCAG +
Preference number: 5 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKVNLRA*SDSWGQ
Trigger: CTGACCCCAGGAGTCACTCAAGGCCCTCAGATTGAC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp TCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCGGTCTGAAAAGCCTGTCTaGCGGCCTTCACTGCCTTGT +
Preference number: 5 (lower is better)
Translates to: SFEQTHHKLILPQKSWMRSEKPV*RPSLPC
Trigger: ACAAGGCAGTGAAGGCCGCAAGACAGGCTTTTCAGA...CCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTGTCACCCTCTTCAGATaGCTTTTCCCGGCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVVTLFR*LFPAAS
Trigger: AGAAGCTGCCGGGAAAAGCAATCTGAAGAGGGTGAC...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTCTGAAAAGCCTGTCTaGCGGCCTTCACTGCCTTGT +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAISEKPV*RPSLPC
Trigger: ACAAGGCAGTGAAGGCCGCAAGACAGGCTTTTCAGA...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp TCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGCGGAGCAGTGAGAGGAGTTaGCTCTGCTGGTTTGACAAC +
Preference number: 5 (lower is better)
Translates to: SFEQTHHKLILPQKSWMRSSERS*LCWFDN
Trigger: GTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGCT...CCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTAGCAGTGAGAGGAGTTaGCTCTGCTGGTTTGACAAC +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAISSERS*LCWFDN
Trigger: GTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGCT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTTCCCGGCAGCTTCTTaGATCAACTTGCCAACCTCT +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIFPAAS*INLPTS
Trigger: AGAGGTTGGCAAGTTGATCAAAGAAGCTGCCGGGAA...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGTTTTCCACCATTCATaGACTCCATTGTCGCCAGCA +
Preference number: 5 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKVFHHS*TPLSPA
Trigger: TGCTGGCGACAATGGAGTCAATGAATGGTGGAAAAC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGGTTTTCCACCATTCATaGACTCCATTGTCGCCAGCA +
Preference number: 5 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMVFHHS*TPLSPA
Trigger: TGCTGGCGACAATGGAGTCAATGAATGGTGGAAAAC...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp GCTCAACACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCGTTTGCTCTGCTGGTTaGACAACCACTGTGTTTCCA +
Preference number: 5 (lower is better)
Translates to: AQHSFEQTHHKLILPQKSVCSAG*TTTVFP
Trigger: TGGAAACACAGTGGTTGTCAAACCAGCAGAGCAAAC...GGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp TTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGGAAAGGCAAATTCAACAGCATaGTCCAAGTCGGCATCAGCT +
Preference number: 5 (lower is better)
Translates to: FTLQLTCMLSTSRVTKGKANSTA*SKSASA
Trigger: AGCTGATGCCGACTTGGACAATGCTGTTGAATTTGC...CTTTCCCTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTCCAAAAATCTCCTCTTaGGCAATGCGCATCTCATCT +
Preference number: 5 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVPKISS*AMRISS
Trigger: AGATGAGATGCGCATTGCCAAAGAGGAGATTTTTGG...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTAAGACAGGAAATTTCTaGCCACTCACTGAATCATGC +
Preference number: 5 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVKTGNF*PLTESC
Trigger: GCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCTT...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp AAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGCAGTTATTAAATCAGCCAACTaGTATAATAGTCGCCCCCTC +
Preference number: 5 (lower is better)
Translates to: KQSKDFITTGNRAIYSAVIKSAN*YNSRPL
Trigger: GAGGGGGCGACTATTATACAAGTTGGCTGATTTAAT...AACTGCAGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGTTCCATCAATTGGTATaGTACGGCCCTGGATCTTGT +
Preference number: 5 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKFHQLV*YGPGSC
Trigger: ACAAGATCCAGGGCCGTACAATACCAATTGATGGAA...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGTTCCATCAATTGGTATaGTACGGCCCTGGATCTTGT +
Preference number: 5 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMFHQLV*YGPGSC
Trigger: ACAAGATCCAGGGCCGTACAATACCAATTGATGGAA...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp TTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTACTCTGTTTGCTCTGCTGGTTaGACAACCACTGTGTTTCCA +
Preference number: 5 (lower is better)
Translates to: FSKQSKDFITTGNRAIYSVCSAG*TTTVFP
Trigger: TGGAAACACAGTGGTTGTCAAACCAGCAGAGCAAAC...AGAGTAAATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp GAGCAATTTACTCTGCAGTTAACGTGTATGTTAAGTACTTCAAGAGTCACTAAGGCTTCTTTGATCAACTaGCCAACCTCTGTTGATCCT +
Preference number: 5 (lower is better)
Translates to: EQFTLQLTCMLSTSRVTKASLIN*PTSVDP
Trigger: AGGATCAACAGAGGTTGGCAAGTTGATCAAAGAAGC...CTTAGTGACTCTTGAAGTACTTAACATACACGTTAACTGCAGAGTAAATTGCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGAAGACAGGAAATTTCTaGCCACTCACTGAATCATGC +
Preference number: 5 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMKTGNF*PLTESC
Trigger: GCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCTT...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTATTCCAAGGAATGATTaGGCCACATACACCAATAGG +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIIPRND*ATYTNR
Trigger: CCTATTGGTGTATGTGGCCAAATCATTCCTTGGAAT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGATTCCAAGGAATGATTaGGCCACATACACCAATAGG +
Preference number: 5 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMIPRND*ATYTNR
Trigger: CCTATTGGTGTATGTGGCCAAATCATTCCTTGGAAT...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTAAAAATTTCCATCAATaGGTATTGTACGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIKNFHQ*VLYGPG
Trigger: TCCAGGGCCGTACAATACCAATTGATGGAAATTTTT...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp CACTCCTTCGAACAAACTCATCATAAATTGATTCTTCCACAAAAATCCTGGATGAAAAATTTCCATCAATaGGTATTGTACGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: HSFEQTHHKLILPQKSWMKNFHQ*VLYGPG
Trigger: TCCAGGGCCGTACAATACCAATTGATGGAAATTTTT...CATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000376939.5
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTGCTTTATCAATGTCTTaGGTAAACACTCCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIALSMS*VNTPAD
Trigger: ATCAGCAGGAGTGTTTACCAAAGACATTGATAAAGC...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS-3UTR CAA 90 bp GGAAACTTTTCAAAACAGTCCAAGGACTTTATAACTACTGGGAACAGAGCAATTTTCACTGTGACTGTTTaGACCTCTGTATATTCATGG +
Preference number: 5 (lower is better)
Translates to: GNFSKQSKDFITTGNRAIFTVTV*TSVYSW
Trigger: CCATGAATATACAGAGGTCAAAACAGTCACAGTGAA...AATTGCTCTGTTCCCAGTAGTTATAAAGTCCTTGGACTGTTTTGAAAAGTTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS GCA 72 bp AGATGCCACGTGGAGAGCAGTGAGAGGAGTTTGCTCTaGTGGTTTGACAACCACTGTGTTTCCACAGCTCAG +
Preference number: 6 (lower is better)
Translates to: RCHVESSERSLL*WFDNHCVSTAQ
Trigger: CTGAGCTGTGGAAACACAGTGGTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGCTCTCCACGTGGCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000482210.5
CDS GCA 72 bp ACAACACTGGCCCTGGTGGTAGAATACCCCATGGTGTaGAAATTCAACAGCATTGTCCAAGTCGGCATCAGC +
Preference number: 6 (lower is better)
Translates to: TTLALVVEYPMV*KFNSIVQVGIS
Trigger: GCTGATGCCGACTTGGACAATGCTGTTGAATTTGCACACCATGGGGTATTCTACCACCAGGGCCAGTGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS GCA 72 bp CTGAGGATGACATTTCTGATTCGGCTCCTCCTGCAATaGTGTGAAGGAGAAAGCTGTAGGTTCCCTGGGAGT +
Preference number: 6 (lower is better)
Translates to: LRMTFLIRLLLQ*CEGESCRFPGS
Trigger: ACTCCCAGGGAACCTACAGCTTTCTCCTTCACAGCATTGCAGGAGGAGCCGAATCAGAAATGTCATCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000419959.5
CDS CAA 90 bp ATTGTCGCCAGCAGCAGACGATCTCTTTCGATTAAATCAGCCAACTaGTATAATAGTCGCCCCCTCTCGGAAGCATCCATAGTACGCCAC +
Preference number: 6 (lower is better)
Translates to: IVASSRRSLSIKSAN*YNSRPLSEASIVRH
Trigger: GTGGCGTACTATGGATGCTTCCGAGAGGGGGCGACTATTATACAAGTTGGCTGATTTAATCGAAAGAGATCGTCTGCTGCTGGCGACAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000446946.1
ENST00000482210.5
ENST00000493113.1
CDS GCA 72 bp ATTAAAGATGCCACGTGGAGAGCAGTGAGAGGAGTTTaGTCTGCTGGTTTGACAACCACTGTGTTTCCACAG +
Preference number: 6 (lower is better)
Translates to: IKDATWRAVRGV*SAGLTTTVFPQ
Trigger: CTGTGGAAACACAGTGGTTGTCAAACCAGCAGAGCAAACTCCTCTCACTGCTCTCCACGTGGCATCTTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000482210.5
CDS CCA 72 bp TTGTTCCTTGTCAATCTGAGGGCCTTGAGTGACTCCTaGGGTCAGAGGATTTCCAAGGATATACTTCTTAGC +
Preference number: 6 (lower is better)
Translates to: LFLVNLRALSDS*GQRISKDILLS
Trigger: GCTAAGAAGTATATCCTTGGAAATCCTCTGACCCCAGGAGTCACTCAAGGCCCTCAGATTGACAAGGAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297785.8
CDS TCA 72 bp TCTTGTCAGCCCAACCTGCACAGTAGCGCAATGTTTTaGTGCAGCCTGCTAAATCATTCAGATATGCATTGG +
Preference number: 6 (lower is better)
Translates to: SCQPNLHSSAMF*CSLLNHSDMHW
Trigger: CCAATGCATATCTGAATGATTTAGCAGGCTGCATCAAAACATTGCGCTACTGTGCAGGTTGGGCTGACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000446946.1
ENST00000482210.5
ENST00000493113.1
CDS CAA 72 bp AGCAGCAGACGATCTCTTTCGATTAAATCAGCCAACTaGTATAATAGTCGCCCCCTCTCGGAAGCATCCATA +
Preference number: 6 (lower is better)
Translates to: SSRRSLSIKSAN*YNSRPLSEASI
Trigger: TATGGATGCTTCCGAGAGGGGGCGACTATTATACAAGTTGGCTGATTTAATCGAAAGAGATCGTCTGCTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000446946.1
ENST00000482210.5
ENST00000493113.1
CDS TCA 72 bp CAGATATGCATTGGAATAGAGTTTTCCACCATTCATTaGCTCCATTGTCGCCAGCAGCAGACGATCTCTTTC +
Preference number: 6 (lower is better)
Translates to: QICIGIEFSTIH*LHCRQQQTISF
Trigger: GAAAGAGATCGTCTGCTGCTGGCGACAATGGAGTCAATGAATGGTGGAAAACTCTATTCCAATGCATATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000446946.1
ENST00000482210.5
ENST00000493113.1
CDS CAA 72 bp TCAGATATGCATTGGAATAGAGTTTTCCACCATTCATaGACTCCATTGTCGCCAGCAGCAGACGATCTCTTT +
Preference number: 6 (lower is better)
Translates to: SDMHWNRVFHHS*TPLSPAADDLF
Trigger: AAAGAGATCGTCTGCTGCTGGCGACAATGGAGTCAATGAATGGTGGAAAACTCTATTCCAATGCATATCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000297785.8
ENST00000376939.5
ENST00000419959.5
ENST00000446946.1
ENST00000482210.5
ENST00000493113.1
CDS CAA 72 bp CCCGCTCAACACTCCTTCGAACAAACTCATCATAAATaGATTCTTCCACAAAAATCCTGGATGCGGCTATAC +
Preference number: 6 (lower is better)
Translates to: PAQHSFEQTHHK*ILPQKSWMRLY
Trigger: GTATAGCCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGCGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297785.8
ENST00000376939.5
CDS TCA 72 bp CCGCTCAACACTCCTTCGAACAAACTCATCATAAATTaGTTCTTCCACAAAAATCCTGGATGCGGCTATACA +
Preference number: 6 (lower is better)
Translates to: PLNTPSNKLIIN*FFHKNPGCGYT
Trigger: TGTATAGCCGCATCCAGGATTTTTGTGGAAGAATCAATTTATGATGAGTTTGTTCGAAGGAGTGTTGAGCGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297785.8
ENST00000376939.5