Pregenerated sensors for AFM (Homo sapiens)
Ensembl gene IDs: ENSG00000079557Ensembl transcript IDs: ENST00000226355.5, ENST00000505794.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCAGACTTCAGGACTCTCTGCTTTGCAGCACTTATCCACTACATTTaGGAAATTTGTAAACAAAGACTGCAGCTCTTCATCTGTGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: ADFRTLCFAALIHYI*EICKQRLQLFICEF Trigger: GAACTCACAGATGAAGAGCTGCAGTCTTTGTTTACAAATTTCGCAAATGTAGTGGATAAGTGCTGCAAAGCAGAGAGTCCTGAAGTCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS TCA 90 bp | GAAGAAACAGAGTCTTCTTTGAGCATCAACCTTACTGCAGCAGTGTaGGAAATTATGCTTTTGTGGCAGCCCCTCCATAGCACATATTTT | + |
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Preference number: 5 (lower is better) Translates to: EETESSLSINLTAAV*EIMLLWQPLHSTYF Trigger: AAAATATGTGCTATGGAGGGGCTGCCACAAAAGCATAATTTCTCACACTGCTGCAGTAAGGTTGATGCTCAAAGAAGACTCTGTTTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS GCA 90 bp | GCGAAATTTGTAAACAAAGACTGCAGCTCTTCATCTGTGAGTTCATaGTTCAGCTTCACTAAGTTGACAAGAAACCTGTCTGTCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: AKFVNKDCSSSSVSS*FSFTKLTRNLSVFL Trigger: GAGGAAGACAGACAGGTTTCTTGTCAACTTAGTGAAGCTGAAGCATGAACTCACAGATGAAGAGCTGCAGTCTTTGTTTACAAATTTCGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS TCA 90 bp | GGGTTTTCTGTGTTGCAGCAATTTCTCAGGAGATCTTTGTATATTTaGACAATTCTTAAAAGCTCTGGTATAGACAGGTCTGGATGTCTC | + |
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Preference number: 5 (lower is better) Translates to: GFSVLQQFLRRSLYI*TILKSSGIDRSGCL Trigger: GAGACATCCAGACCTGTCTATACCAGAGCTTTTAAGAATTGTTCAAATATACAAAGATCTCCTGAGAAATTGCTGCAACACAGAAAACCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000226355.5 ENST00000505794.1 |
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| CDS GCA 90 bp | ATTTGTCTTCCGCGTAACGGTAACAACCTGGAGGGTTTTCTGTGTTaGAGCAATTTCTCAGGAGATCTTTGTATATTTGAACAATTCTTA | + |
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Preference number: 5 (lower is better) Translates to: ICLPRNGNNLEGFLC*SNFSGDLCIFEQFL Trigger: TAAGAATTGTTCAAATATACAAAGATCTCCTGAGAAATTGCTGCAACACAGAAAACCCTCCAGGTTGTTACCGTTACGCGGAAGACAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000226355.5 ENST00000505794.1 |
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| CDS GCA 90 bp | GCCAATTTTTGGACTCTCTTCATTAAAGCAGACTTCAGGACTCTCTaGTTTGCAGCACTTATCCACTACATTTGCGAAATTTGTAAACAA | + |
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Preference number: 5 (lower is better) Translates to: ANFWTLFIKADFRTL*FAALIHYICEICKQ Trigger: TTGTTTACAAATTTCGCAAATGTAGTGGATAAGTGCTGCAAAGCAGAGAGTCCTGAAGTCTGCTTTAATGAAGAGAGTCCAAAAATTGGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 72 bp | TTTCTCGCCAAGAGACACCAGTTCTTCAGTGGAGAGTaGGGGAGCTATCTTCGTGAGCCTGATGAGGTAATG | + |
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Preference number: 6 (lower is better) Translates to: FLAKRHQFFSGE*GSYLREPDEVM Trigger: CATTACCTCATCAGGCTCACGAAGATAGCTCCCCAACTCTCCACTGAAGAACTGGTGTCTCTTGGCGAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 90 bp | TGTCACCATTTTCTCGCCAAGAGACACCAGTTCTTCAGTGGAGAGTaGGGGAGCTATCTTCGTGAGCCTGATGAGGTAATGGTATTTCAA | + |
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Preference number: 6 (lower is better) Translates to: CHHFLAKRHQFFSGE*GSYLREPDEVMVFQ Trigger: TTGAAATACCATTACCTCATCAGGCTCACGAAGATAGCTCCCCAACTCTCCACTGAAGAACTGGTGTCTCTTGGCGAGAAAATGGTGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS TCA 72 bp | GAGTCTTCTTTGAGCATCAACCTTACTGCAGCAGTGTaGGAAATTATGCTTTTGTGGCAGCCCCTCCATAGC | + |
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Preference number: 6 (lower is better) Translates to: ESSLSINLTAAV*EIMLLWQPLHS Trigger: GCTATGGAGGGGCTGCCACAAAAGCATAATTTCTCACACTGCTGCAGTAAGGTTGATGCTCAAAGAAGACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CCA 72 bp | CTCATTGAATTTGTCTTCCGCGTAACGGTAACAACCTaGAGGGTTTTCTGTGTTGCAGCAATTTCTCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LIEFVFRVTVTT*RVFCVAAISQE Trigger: CTCCTGAGAAATTGCTGCAACACAGAAAACCCTCCAGGTTGTTACCGTTACGCGGAAGACAAATTCAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000226355.5 ENST00000505794.1 |
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| CDS CAA 72 bp | CACTCTGGGAGCGTCTTGTCAGCCATACATCTGTCTTaGTATTCTACCATGTCTTTCACCAGCTTTTCCATT | + |
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Preference number: 6 (lower is better) Translates to: HSGSVLSAIHLS*YSTMSFTSFSI Trigger: AATGGAAAAGCTGGTGAAAGACATGGTAGAATACAAAGACAGATGTATGGCTGACAAGACGCTCCCAGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS GCA 72 bp | AGAAGAAACAGAGTCTTCTTTGAGCATCAACCTTACTaGAGCAGTGTGAGAAATTATGCTTTTGTGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RRNRVFFEHQPY*SSVRNYAFVAA Trigger: GGCTGCCACAAAAGCATAATTTCTCACACTGCTGCAGTAAGGTTGATGCTCAAAGAAGACTCTGTTTCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS GCA 72 bp | CCGCGTAACGGTAACAACCTGGAGGGTTTTCTGTGTTaGAGCAATTTCTCAGGAGATCTTTGTATATTTGAA | + |
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Preference number: 6 (lower is better) Translates to: PRNGNNLEGFLC*SNFSGDLCIFE Trigger: TTCAAATATACAAAGATCTCCTGAGAAATTGCTGCAACACAGAAAACCCTCCAGGTTGTTACCGTTACGCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000226355.5 ENST00000505794.1 |
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| CDS GCA 72 bp | GTAAACAAAGACTGCAGCTCTTCATCTGTGAGTTCATaGTTCAGCTTCACTAAGTTGACAAGAAACCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VNKDCSSSSVSS*FSFTKLTRNLS Trigger: AGACAGGTTTCTTGTCAACTTAGTGAAGCTGAAGCATGAACTCACAGATGAAGAGCTGCAGTCTTTGTTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 72 bp | CCTTCTCTTAGAGATAAATCCTTTGGTCTATCATCTTaGTTTGAGTTAATTATGCACTGGCCGCGCTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: PSLRDKSFGLSS*FELIMHWPRSG Trigger: ACCAGAGCGCGGCCAGTGCATAATTAACTCAAACAAAGATGATAGACCAAAGGATTTATCTCTAAGAGAAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 72 bp | GCAAAGTTTGTTTTACAGCAGTGGTCCACAGCAGGGTaGATAGTTCGATTTTCATTTACTCCACATAACTCT | + |
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Preference number: 6 (lower is better) Translates to: AKFVLQQWSTAG*IVRFSFTPHNS Trigger: AGAGTTATGTGGAGTAAATGAAAATCGAACTATCAACCCTGCTGTGGACCACTGCTGTAAAACAAACTTTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 90 bp | TCCTGTAAAACATTATTAGGTAATTTTGAACACTCTGGGAGCGTCTaGTCAGCCATACATCTGTCTTTGTATTCTACCATGTCTTTCACC | + |
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Preference number: 6 (lower is better) Translates to: SCKTLLGNFEHSGSV*SAIHLSLYSTMSFT Trigger: GGTGAAAGACATGGTAGAATACAAAGACAGATGTATGGCTGACAAGACGCTCCCAGAGTGTTCAAAATTACCTAATAATGTTTTACAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 72 bp | ACATTATTAGGTAATTTTGAACACTCTGGGAGCGTCTaGTCAGCCATACATCTGTCTTTGTATTCTACCATG | + |
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Preference number: 6 (lower is better) Translates to: TLLGNFEHSGSV*SAIHLSLYSTM Trigger: CATGGTAGAATACAAAGACAGATGTATGGCTGACAAGACGCTCCCAGAGTGTTCAAAATTACCTAATAATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 90 bp | ATTTTTGGACTCTCTTCATTAAAGCAGACTTCAGGACTCTCTGCTTaGCAGCACTTATCCACTACATTTGCGAAATTTGTAAACAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: IFGLSSLKQTSGLSA*QHLSTTFAKFVNKD Trigger: GTCTTTGTTTACAAATTTCGCAAATGTAGTGGATAAGTGCTGCAAAGCAGAGAGTCCTGAAGTCTGCTTTAATGAAGAGAGTCCAAAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000226355.5 |
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| CDS CAA 90 bp | TTTCAAACCATCCTTCCCCAAATTCTGGAAATGTTTACATTCTTGTaGTACCATCTTGAGGCTTTTCTCAGTTGTCTCATTGAATTTGTC | + |
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Preference number: 6 (lower is better) Translates to: FQTILPQILEMFTFL*YHLEAFLSCLIEFV Trigger: GACAAATTCAATGAGACAACTGAGAAAAGCCTCAAGATGGTACAACAAGAATGTAAACATTTCCAGAATTTGGGGAAGGATGGTTTGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000226355.5 ENST00000505794.1 |
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| CDS TCA 72 bp | GTGTTGCAGCAATTTCTCAGGAGATCTTTGTATATTTaGACAATTCTTAAAAGCTCTGGTATAGACAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: VLQQFLRRSLYI*TILKSSGIDRS Trigger: AGACCTGTCTATACCAGAGCTTTTAAGAATTGTTCAAATATACAAAGATCTCCTGAGAAATTGCTGCAACAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000226355.5 ENST00000505794.1 |
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