RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AFG3L2 (Homo sapiens)

Ensembl gene IDs: ENSG00000141385

Ensembl transcript IDs: ENST00000269143.8, ENST00000588893.1, ENST00000683671.1

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTaGCACAGGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTCCAG +
Preference number: 1 (lower is better)
Translates to: SSATIPATRSADPTW*HRVQPRPLWAQPFQ
Trigger: CTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR CCA 90 bp GAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTaGTGCCACAGGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTC +
Preference number: 1 (lower is better)
Translates to: ESSATIPATRSADPT*CHRVQPRPLWAQPF
Trigger: GAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR GCA 90 bp GAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTaGCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCC +
Preference number: 1 (lower is better)
Translates to: ESIPSHTPRVQCNDP*HTVSRPHLVPQGPA
Trigger: GGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR CCA 90 bp TCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTCGGCCACTCTaGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAATGAGGCTATG +
Preference number: 1 (lower is better)
Translates to: SADPTWCHRVQPRPL*AQPFQHVWEPNEAM
Trigger: CATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR GCA 90 bp GGGCGACAAAGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTaGAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCA +
Preference number: 1 (lower is better)
Translates to: GRQRESIPSHTPRVQ*NDPCHTVSRPHLVP
Trigger: TGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCTTTGTCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR CCA 90 bp AGGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTCCAGCACGTCTaGGAGCCCAATGAGGCTATGGGACAGTGTGCATTTCCCTCAAGG +
Preference number: 1 (lower is better)
Translates to: RVQPRPLWAQPFQHV*EPNEAMGQCAFPSR
Trigger: CCTTGAGGGAAATGCACACTGTCCCATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR TCA 90 bp TCGGCCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAATaGGGCTATGGGACAGTGTGCATTTCCCTCAAGGCCTCCGGAAAG +
Preference number: 1 (lower is better)
Translates to: SATLGSTFPARLGAQ*GYGTVCISLKASGK
Trigger: CTTTCCGGAGGCCTTGAGGGAAATGCACACTGTCCCATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR TCA 90 bp GTGCATTTCCCTCAAGGCCTCCGGAAAGTCACCTGCCACCCACTGTaGCCTCTGAGGCTGAAAGGACTAAGGACTCCTTTCCCCATCATT +
Preference number: 1 (lower is better)
Translates to: VHFPQGLRKVTCHPL*PLRLKGLRTPFPII
Trigger: AATGATGGGGAAAGGAGTCCTTAGTCCTTTCAGCCTCAGAGGTCACAGTGGGTGGCAGGTGACTTTCCGGAGGCCTTGAGGGAAATGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR TCA 90 bp AATTTCACAGCCCATCTGCACAGGGGAACTGAGGAGAAACAGGAATaGAGAGTGGGCGACAAAGAGAAAGCATCCCTTCCCACACGCCAA +
Preference number: 1 (lower is better)
Translates to: NFTAHLHRGTEEKQE*RVGDKEKASLPTRQ
Trigger: TTGGCGTGTGGGAAGGGATGCTTTCTCTTTGTCGCCCACTCTTCATTCCTGTTTCTCCTCAGTTCCCCTGTGCAGATGGGCTGTGAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR TCA 90 bp TGGCTAAAATCAGCGCAGCATTCCCATTCTTCTGAAAGCCACAGCTaGAATAATGCACCAGCTGAAACCACAGTGGACAGACTGAGATGG +
Preference number: 1 (lower is better)
Translates to: WLKSAQHSHSSESHS*NNAPAETTVDRLRW
Trigger: CCATCTCAGTCTGTCCACTGTGGTTTCAGCTGGTGCATTATTTCAGCTGTGGCTTTCAGAAGAATGGGAATGCTGCGCTGATTTTAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR GCA 90 bp TTAAAATGTTCTTATCAAGACTCCAATTTAATTTCACAGCCCATCTaGACAGGGGAACTGAGGAGAAACAGGAATGAAGAGTGGGCGACA +
Preference number: 1 (lower is better)
Translates to: LKCSYQDSNLISQPI*TGELRRNRNEEWAT
Trigger: TGTCGCCCACTCTTCATTCCTGTTTCTCCTCAGTTCCCCTGTGCAGATGGGCTGTGAAATTAAATTGGAGTCTTGATAAGAACATTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR CAA 90 bp AGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACTaGGTGCCACAGGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTT +
Preference number: 2 (lower is better)
Translates to: RVQCNDPCHTVSRPH*VPQGPASATLGSTF
Trigger: AAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR-3UTR CCA 90 bp CACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACAGCCCAATGAGGCTATaGGACAGTGTGCATTTCCCT +
Preference number: 2 (lower is better)
Translates to: HTPRVQCNDPCHTVSRPHSPMRL*DSVHFP
Trigger: AGGGAAATGCACACTGTCCCATAGCCTCATTGGGCT...GTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR-3UTR TCA 90 bp CCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAATGAGGCTATGGGATCTGAAAGCCACAGCTaGAATAATGCACCAGCTGAA +
Preference number: 2 (lower is better)
Translates to: PLWAQPFQHVWEPNEAMGSESHS*NNAPAE
Trigger: TTCAGCTGGTGCATTATTTCAGCTGTGGCTTTCAGA...TCCCATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR-3UTR CCA 90 bp ACAGGAATGAAGAGTGGGCGACAAAGAGAAAGCATCCCTTCCCACACGCCAAGACCCCATCATTTCAGCTaGGCCAGTGGCTGGCTAAAA +
Preference number: 2 (lower is better)
Translates to: TGMKSGRQRESIPSHTPRPHHFS*ASGWLK
Trigger: TTTTAGCCAGCCACTGGCCCAGCTGAAATGATGGGG...TCTTGGCGTGTGGGAAGGGATGCTTTCTCTTTGTCGCCCACTCTTCATTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR CCA 72 bp GCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTaGTGCCACAGGGTCCAGCCTCGGCCACTCTGGGCT +
Preference number: 3 (lower is better)
Translates to: ATIPATRSADPT*CHRVQPRPLWA
Trigger: AGCCCAGAGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR GCA 72 bp ACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTaGCACAGGGTCCAGCCTCGGCCACTCTGGGCTCAA +
Preference number: 3 (lower is better)
Translates to: TIPATRSADPTW*HRVQPRPLWAQ
Trigger: TTGAGCCCAGAGTGGCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR GCA 72 bp CCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTaGCACACGGTCAGCCGACCCCACTTGGTGCCACAG +
Preference number: 3 (lower is better)
Translates to: PSHTPRVQCNDP*HTVSRPHLVPQ
Trigger: CTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR-3UTR CAA 90 bp AAAGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCGTCAGCCGACCCCACTaGGTGCCACAGGGTCCAGCC +
Preference number: 3 (lower is better)
Translates to: KEKASLPTRQESSATIPAVSRPH*VPQGPA
Trigger: GGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGAC...GGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR GCA 72 bp AGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTaGAACGATCCCTGCCACACGGTCAGCCGACCCCAC +
Preference number: 3 (lower is better)
Translates to: RESIPSHTPRVQ*NDPCHTVSRPH
Trigger: GTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR TCA 72 bp CTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAATaGGGCTATGGGACAGTGTGCATTTCCCTCAAGGCC +
Preference number: 3 (lower is better)
Translates to: LGSTFPARLGAQ*GYGTVCISLKA
Trigger: GGCCTTGAGGGAAATGCACACTGTCCCATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
3UTR TCA 72 bp CCTCAAGGCCTCCGGAAAGTCACCTGCCACCCACTGTaGCCTCTGAGGCTGAAAGGACTAAGGACTCCTTTC +
Preference number: 3 (lower is better)
Translates to: PQGLRKVTCHPL*PLRLKGLRTPF
Trigger: GAAAGGAGTCCTTAGTCCTTTCAGCCTCAGAGGTCACAGTGGGTGGCAGGTGACTTTCCGGAGGCCTTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp ATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTCGGCGTCTGGGAGCCCAATaGGGCTATGGGACAGTGTGC +
Preference number: 4 (lower is better)
Translates to: IPATRSADPTWCHRVQPRRLGAQ*GYGTVC
Trigger: GCACACTGTCCCATAGCCTCATTGGGCTCCCAGACG...CCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp GCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCTCTGGGCCTCTAGTTaGCAACTTTCTCACCCGGGG +
Preference number: 4 (lower is better)
Translates to: ATIPATRSADPTWCHRVQLWASS*QLSHPG
Trigger: CCCCGGGTGAGAAAGTTGCCAACTAGAGGCCCAGAG...CTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp GGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAGTGGACAGACTGAGATaGCCTCCCTCTGGGCCTCTA +
Preference number: 4 (lower is better)
Translates to: GSSLGHSGLNLSSTSGSPVDRLR*PPSGPL
Trigger: TAGAGGCCCAGAGGGAGGCCATCTCAGTCTGTCCAC...TGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp ACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTAATACCATGTCCCCCTaGCGTGGGAGGTCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: TIPATRSADPTWCHRVQPNTMSP*RGRSKE
Trigger: CTCCTTTGACCTCCCACGTCAGGGGGACATGGTATT...AGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp AGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACGCCGACCCCACTTGGTaGCACAGGGTCCAGCCTCGG +
Preference number: 4 (lower is better)
Translates to: RESIPSHTPRVQCNDPCHADPTW*HRVQPR
Trigger: CCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGC...GTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp GGGACAGTGTGCATTTCCCTCAAGGCCTCCGGAAAGTCACCTGCCACCCACTGTTCAGCCGACCCCACTTaGTGCCACAGGGTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: GTVCISLKASGKSPATHCSADPT*CHRVQP
Trigger: AGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGA...ACAGTGGGTGGCAGGTGACTTTCCGGAGGCCTTGAGGGAAATGCACACTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp CACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACGCCTGCTTCGTGGTATaGCACAGTCTTCTTCTCCTC +
Preference number: 4 (lower is better)
Translates to: HTPRVQCNDPCHTVSRPHACFVV*HSLLLL
Trigger: GAGGAGAAGAAGACTGTGGCATACCACGAAGCAGGC...GTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp AGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACCAGTGCAACGATCCCTaGCACACGGTCAGCCGACCC +
Preference number: 4 (lower is better)
Translates to: RESIPSHTPRVQCNDPCHQCNDP*HTVSRP
Trigger: GGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTG...GTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp CACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACCCCCATCATTTCAGCTaGGCCAGTGGCTGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: HTPRVQCNDPCHTVSRPHPHHFS*ASGWLK
Trigger: TTTTAGCCAGCCACTGGCCCAGCTGAAATGATGGGG...GTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp GGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCACATCGATTTCATCGATaGAGAGGATGCAAGGGGCAT +
Preference number: 4 (lower is better)
Translates to: GSSLGHSGLNLSSTSGSPHRFHR*RGCKGH
Trigger: ATGCCCCTTGCATCCTCTTCATCGATGAAATCGATG...TGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp GCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCTTTGCCACGTGGGATaGTGGATACCTTTAAAAGCG +
Preference number: 4 (lower is better)
Translates to: ATIPATRSADPTWCHRVQLCHVG*WIPLKA
Trigger: CGCTTTTAAAGGTATCCATCATCCCACGTGGCAAAG...CTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp CCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAATGAGGCTATGGGAACGCCAAGAGTCCAGTaGAACGATCCCTGCCACACG +
Preference number: 4 (lower is better)
Translates to: PLWAQPFQHVWEPNEAMGTPRVQ*NDPCHT
Trigger: CGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGT...TCCCATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp ACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTTTTCCGCAAATGGTCTaGGGCCCAAAAGTTCAACCA +
Preference number: 4 (lower is better)
Translates to: TIPATRSADPTWCHRVQPFPQMV*GPKVQP
Trigger: TGGTTGAACTTTTGGGCCCCAGACCATTTGCGGAAA...AGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp TCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTCGGCATCATCTATCAATCTTaGAGTGGCTTCACTGTAAGG +
Preference number: 4 (lower is better)
Translates to: SLPHGQPTPLGATGSSLGIIYQS*SGFTVR
Trigger: CCTTACAGTGAAGCCACTGCAAGATTGATAGATGAT...GCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp GCTGAAAGGACTAAGGACTCCTTTCCCCATCATTTCAGCTGGGCCAGTGGCTGGCAGCCTCGGCCACTCTaGGCTCAACCTTTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: AERTKDSFPHHFSWASGWQPRPL*AQPFQH
Trigger: GTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTG...CCAGCCACTGGCCCAGCTGAAATGATGGGGAAAGGAGTCCTTAGTCCTTTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp ATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTCGGTCATTCATGCCAAACTaGACAATTTGGGCATATGCA +
Preference number: 4 (lower is better)
Translates to: IPATRSADPTWCHRVQPRSFMPN*TIWAYA
Trigger: TGCATATGCCCAAATTGTTCAGTTTGGCATGAATGA...CCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp TCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTCGGCCAACCTTTTCATTCATaGCAAACTGAACAATTTGGG +
Preference number: 4 (lower is better)
Translates to: SLPHGQPTPLGATGSSLGQPFHS*QTEQFG
Trigger: CCCAAATTGTTCAGTTTGGCATGAATGAAAAGGTTG...GCCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp GGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAAACAGGAATGAAGAGTaGGCGACAAAGAGAAAGCAT +
Preference number: 4 (lower is better)
Translates to: GSSLGHSGLNLSSTSGSPNRNEE*ATKRKH
Trigger: ATGCTTTCTCTTTGTCGCCCACTCTTCATTCCTGTT...TGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp ATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCCTCGGTTTCTCAAGTCATCTTaGGCACCAGTTGTAATTCTT +
Preference number: 4 (lower is better)
Translates to: IPATRSADPTWCHRVQPRFLKSS*APVVIL
Trigger: AAGAATTACAACTGGTGCTCAAGATGACTTGAGAAA...CCGAGGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp GAGGCTGAAAGGACTAAGGACTCCTTTCCCCATCATTTCAGCTGGGCCAGTGGCGGCTATGGGACAGTGTaGATTTCCCTCAAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: EAERTKDSFPHHFSWASGGYGTV*ISLKAS
Trigger: GGAGGCCTTGAGGGAAATGCACACTGTCCCATAGCC...GCCACTGGCCCAGCTGAAATGATGGGGAAAGGAGTCCTTAGTCCTTTCAGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp GTGTGCATTTCCCTCAAGGCCTCCGGAAAGTCACCTGCCACCCACTGTGACCTCATTTCACAGCCCATCTaGACAGGGGAACTGAGGAGA +
Preference number: 4 (lower is better)
Translates to: VCISLKASGKSPATHCDLISQPI*TGELRR
Trigger: TCTCCTCAGTTCCCCTGTGCAGATGGGCTGTGAAAT...GAGGTCACAGTGGGTGGCAGGTGACTTTCCGGAGGCCTTGAGGGAAATGCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp GAAAGGACTAAGGACTCCTTTCCCCATCATTTCAGCTGGGCCAGTGGCTGGCTAAAGGCCTTCTGGAAGTaGGGTGTCCTCATCCAAGCT +
Preference number: 4 (lower is better)
Translates to: ERTKDSFPHHFSWASGWLKAFWK*GVLIQA
Trigger: AGCTTGGATGAGGACACCTCACTTCCAGAAGGCCTT...TAGCCAGCCACTGGCCCAGCTGAAATGATGGGGAAAGGAGTCCTTAGTCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp GGGACAGTGTGCATTTCCCTCAAGGCCTCCGGAAAGTCACCTGCCACCCACTGTTCTGAAAGCCACAGCTaGAATAATGCACCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: GTVCISLKASGKSPATHCSESHS*NNAPAE
Trigger: TTCAGCTGGTGCATTATTTCAGCTGTGGCTTTCAGA...ACAGTGGGTGGCAGGTGACTTTCCGGAGGCCTTGAGGGAAATGCACACTGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp GCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGTTAAACCAAACGTATTaGCCATCAACAGGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: ATIPATRSADPTWCHRVQLNQTY*PSTGVF
Trigger: AAAAACTCCTGTTGATGGGCAATACGTTTGGTTTAA...CTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp AAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCATCCAAGCTGCCAGTaGCTTCCACAAATTCTTCAT +
Preference number: 4 (lower is better)
Translates to: KHPFPHAKSPVQRSLPHGHPSCQ*LPQILH
Trigger: ATGAAGAATTTGTGGAAGGCACTGGCAGCTTGGATG...ACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp ACAGGAATGAAGAGTGGGCGACAAAGAGAAAGCATCCCTTCCCACACGCCAAGAGAGATGGCCTCCCTCTaGGCCTCTAGTTGGCAACTT +
Preference number: 4 (lower is better)
Translates to: TGMKSGRQRESIPSHTPREMASL*ASSWQL
Trigger: AAGTTGCCAACTAGAGGCCCAGAGGGAGGCCATCTC...TCTTGGCGTGTGGGAAGGGATGCTTTCTCTTTGTCGCCCACTCTTCATTCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp CCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAATGAGGCTATGGGATGGGCATATGCACTCTaGGTTACTTTTCTCAAGTCA +
Preference number: 4 (lower is better)
Translates to: PLWAQPFQHVWEPNEAMGWAYAL*VTFLKS
Trigger: TGACTTGAGAAAAGTAACTCAGAGTGCATATGCCCA...TCCCATAGCCTCATTGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp GAGGCTGAAAGGACTAAGGACTCCTTTCCCCATCATTTCAGCTGGGCCAGTGGCTGTCCTCATCCAAGCTaGCAGTGCCTTCCACAAATT +
Preference number: 4 (lower is better)
Translates to: EAERTKDSFPHHFSWASGCPHPS*QCLPQI
Trigger: AATTTGTGGAAGGCACTGGCAGCTTGGATGAGGACA...GCCACTGGCCCAGCTGAAATGATGGGGAAAGGAGTCCTTAGTCCTTTCAGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp ACAGGAATGAAGAGTGGGCGACAAAGAGAAAGCATCCCTTCCCACACGCCAAGACATGTCCCCCTGACGTaGGAGGTCAAAGGAGATTTG +
Preference number: 4 (lower is better)
Translates to: TGMKSGRQRESIPSHTPRHVPLT*EVKGDL
Trigger: CAAATCTCCTTTGACCTCCCACGTCAGGGGGACATG...TCTTGGCGTGTGGGAAGGGATGCTTTCTCTTTGTCGCCCACTCTTCATTCCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp CCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTGATCTGGATTCAATCTTTAGCCGCAAACAGCGGTaGGCCATGGCCGCCGCCGTG +
Preference number: 4 (lower is better)
Translates to: PVENHSIKTATSDLDSIFSRKQR*AMAAAV
Trigger: CACGGCGGCGGCCATGGCGCACCGCTGTTTGCGGCT...AAAGATTGAATCCAGATCACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp AAGTATGTTACAGCTCCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTGATAACAGCGGTGCGCCATaGCCGCCGCCGTGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: KYVTAPVENHSIKTATSDNSGAP*PPPWPS
Trigger: AGAGGGCCACGGCGGCGGCCATGGCGCACCGCTGTT...ATCACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGGAGCTGTAACATACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp AAAGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCTCCTTTTATGTCTGGTaGTCCAATAAAGATCTGCCT +
Preference number: 4 (lower is better)
Translates to: KEKASLPTRQESSATIPASFYVW*SNKDLP
Trigger: AGGCAGATCTTTATTGGACCACCAGACATAAAAGGA...GGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp AAAGAGAAAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCAACAATTTGGGCATATaGACTCTGAGTTACTTTTCT +
Preference number: 4 (lower is better)
Translates to: KEKASLPTRQESSATIPANNLGI*TLSYFS
Trigger: AGAAAAGTAACTCAGAGTGCATATGCCCAAATTGTT...GGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTTTCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR GCA 90 bp CCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTGATCTGGATTCAATCTTTAAAAGCGGGTCTGCGTaGTCCAGATACCAGCCGGCA +
Preference number: 4 (lower is better)
Translates to: PVENHSIKTATSDLDSIFKSGSA*SRYQPA
Trigger: TGCCGGCTGGTATCTGGAGCACGCAGACCCGCTTTT...AAAGATTGAATCCAGATCACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR TCA 90 bp CCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTGATCTGGATTCAATCTTTGAGGAGAAACAGGAATaGAGAGTGGGCGACAAAGAG +
Preference number: 4 (lower is better)
Translates to: PVENHSIKTATSDLDSIFEEKQE*RVGDKE
Trigger: CTCTTTGTCGCCCACTCTTCATTCCTGTTTCTCCTC...AAAGATTGAATCCAGATCACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp CCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTGATCTGGATTCAATCTTTAGCCCAATGAGGCTATaGGACAGTGTGCATTTCCCT +
Preference number: 4 (lower is better)
Translates to: PVENHSIKTATSDLDSIFSPMRL*DSVHFP
Trigger: AGGGAAATGCACACTGTCCCATAGCCTCATTGGGCT...AAAGATTGAATCCAGATCACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CCA 90 bp TTTAAGTATGTTACAGCTCCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTCCAAGAGCTGCTCTTTaGTATAGAGGTATTGTTCTT +
Preference number: 4 (lower is better)
Translates to: FKYVTAPVENHSIKTATSPRAAL*YRGIVL
Trigger: AAGAACAATACCTCTATACCAAAGAGCAGCTCTTGG...ACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGGAGCTGTAACATACTTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp GAGGCTGAAAGGACTAAGGACTCCTTTCCCCATCATTTCAGCTGGGCCAGTGGCGTCAGCCGACCCCACTaGGTGCCACAGGGTCCAGCC +
Preference number: 5 (lower is better)
Translates to: EAERTKDSFPHHFSWASGVSRPH*VPQGPA
Trigger: GGCTGGACCCTGTGGCACCAAGTGGGGTCGGCTGAC...GCCACTGGCCCAGCTGAAATGATGGGGAAAGGAGTCCTTAGTCCTTTCAGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp GGGTCCAGCCTCGGCCACTCTGGGCTCAACCTTTCCAGCACGTCTGGGAGCCCAAATCTGACAGATGCCTaGCAGCAATCAACGCAGCTT +
Preference number: 5 (lower is better)
Translates to: GSSLGHSGLNLSSTSGSPNLTDA*QQSTQL
Trigger: AAGCTGCGTTGATTGCTGCAAGGCATCTGTCAGATT...TGGGCTCCCAGACGTGCTGGAAAGGTTGAGCCCAGAGTGGCCGAGGCTGGACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp CAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCTCCTTTTCCCGCTCCTaGTTCCAGTCCTTAAGGCCT +
Preference number: 5 (lower is better)
Translates to: QESSATIPATRSADPTWCSFSRS*FQSLRP
Trigger: AGGCCTTAAGGACTGGAACAAGGAGCGGGAAAAGGA...GCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp GCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCCACAGGGTCCAGCATCATCTATCAATCTaGCAGTGGCTTCACTGTAAG +
Preference number: 5 (lower is better)
Translates to: ATIPATRSADPTWCHRVQHHLSI*QWLHCK
Trigger: CTTACAGTGAAGCCACTGCAAGATTGATAGATGATG...CTGGACCCTGTGGCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 90 bp TTTGTGGTTCACTTTCCGGGCTCCATTCCACCCCACTGGCCTGCGTaGCAGTCCTCTTACCAGCACTACACTCTCATCACTGTAGCTGCA +
Preference number: 5 (lower is better)
Translates to: FVVHFPGSIPPHWPA*QSSYQHYTLITVAA
Trigger: TGCAGCTACAGTGATGAGAGTGTAGTGCTGGTAAGAGGACTGGCACGCAGGCCAGTGGGGTGGAATGGAGCCCGGAAAGTGAACCACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CCA 90 bp ATGTTGTGCAAGCATGCAGGCTTCATTCAACTCTGCTGTCGGACGTaGCCACACCCTCCTTTGAAGGAAGAGGGGTACAGCAGGCCAAGA +
Preference number: 5 (lower is better)
Translates to: MLCKHAGFIQLCCRT*PHPPLKEEGYSRPR
Trigger: TCTTGGCCTGCTGTACCCCTCTTCCTTCAAAGGAGGGTGTGGCCACGTCCGACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS-3UTR CAA 90 bp CACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACCAATCACTCGTTCAATaGCCTGTTCAAAGTGTTTCT +
Preference number: 5 (lower is better)
Translates to: HTPRVQCNDPCHTVSRPHQSLVQ*PVQSVS
Trigger: AGAAACACTTTGAACAGGCAATTGAACGAGTGATTG...GTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp CAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCGAGGTCAAAGGAGATTaGCCCAACCTTTTCATTCAT +
Preference number: 5 (lower is better)
Translates to: QESSATIPATRSADPTWCEVKGD*PNLFIH
Trigger: ATGAATGAAAAGGTTGGGCAAATCTCCTTTGACCTC...GCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 90 bp CTGACAGTTCTGATGTTGTGCAAGCATGCAGGCTTCATTCAACTCTaGTGTCGGACGTGGCCACACCCTCCTTTGAAGGAAGAGGGGTAC +
Preference number: 5 (lower is better)
Translates to: LTVLMLCKHAGFIQL*CRTWPHPPLKEEGY
Trigger: GTACCCCTCTTCCTTCAAAGGAGGGTGTGGCCACGTCCGACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACATCAGAACTGTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CCA 90 bp AACCAAAAGTTTGTGGTTCACTTTCCGGGCTCCATTCCACCCCACTaGCCTGCGTGCCAGTCCTCTTACCAGCACTACACTCTCATCACT +
Preference number: 5 (lower is better)
Translates to: NQKFVVHFPGSIPPH*PACQSSYQHYTLIT
Trigger: AGTGATGAGAGTGTAGTGCTGGTAAGAGGACTGGCACGCAGGCCAGTGGGGTGGAATGGAGCCCGGAAAGTGAACCACAAACTTTTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS-3UTR CAA 90 bp AAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTGCCAAACTGAACAATTaGGGCATATGCACTCTGAGT +
Preference number: 5 (lower is better)
Translates to: KHPFPHAKSPVQRSLPHGAKLNN*GICTLS
Trigger: ACTCAGAGTGCATATGCCCAAATTGTTCAGTTTGGC...ACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS TCA 90 bp CTCCTTTTCCCGCTCCTTGTTCCAGTCCTTAAGGCCTTCTGGAAGTaGGGTGTCCTCATCCAAGCTGCCAGTGCCTTCCACAAATTCTTC +
Preference number: 5 (lower is better)
Translates to: LLFPLLVPVLKAFWK*GVLIQAASAFHKFF
Trigger: GAAGAATTTGTGGAAGGCACTGGCAGCTTGGATGAGGACACCTCACTTCCAGAAGGCCTTAAGGACTGGAACAAGGAGCGGGAAAAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 90 bp CTTTGGCAAGAAAGCCACAGGCTCCCAGTTCAAACCCACTGCAACTaGTGCTTTATAGGAGCAAACTCTCCAGCTCTCGCCTGCTTTTGG +
Preference number: 5 (lower is better)
Translates to: LWQESHRLPVQTHCN*CFIGANSPALACFW
Trigger: CCAAAAGCAGGCGAGAGCTGGAGAGTTTGCTCCTATAAAGCAGCAGTTGCAGTGGGTTTGAACTGGGAGCCTGTGGCTTTCTTGCCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS-3UTR CAA 90 bp CAAGAGTCCAGTGCAACGATCCCTGCCACACGGTCAGCCGACCCCACTTGGTGCTTTTCTCAAGTCATCTaGAGCACCAGTTGTAATTCT +
Preference number: 5 (lower is better)
Translates to: QESSATIPATRSADPTWCFSQVI*STSCNS
Trigger: AGAATTACAACTGGTGCTCAAGATGACTTGAGAAAA...GCACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGCACTGGACTCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp AAGCATCCCTTCCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACACGGTATTTTTCAAATCCTTTaGGGGGTCGAGAACAGAATC +
Preference number: 5 (lower is better)
Translates to: KHPFPHAKSPVQRSLPHGIFQIL*GVENRI
Trigger: GATTCTGTTCTCGACCCCCAAAAGGATTTGAAAAAT...ACCGTGTGGCAGGGATCGTTGCACTGGACTCTTGGCGTGTGGGAAGGGATGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS CCA 90 bp AGTGGCTTCACTGTAAGGTTTCTCCAATACCATGTCCCCCTGACGTaGGAGGTCAAAGGAGATTTGCCCAACCTTTTCATTCATGCCAAA +
Preference number: 5 (lower is better)
Translates to: SGFTVRFLQYHVPLT*EVKGDLPNLFIHAK
Trigger: TTTGGCATGAATGAAAAGGTTGGGCAAATCTCCTTTGACCTCCCACGTCAGGGGGACATGGTATTGGAGAAACCTTACAGTGAAGCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp GCTGAAAGGACTAAGGACTCCTTTCCCCATCATTTCAGCTGGGCCAGTGGCTGGATTAAACCAAACGTATaGCCCATCAACAGGAGTTTT +
Preference number: 5 (lower is better)
Translates to: AERTKDSFPHHFSWASGWIKPNV*PINRSF
Trigger: AAAACTCCTGTTGATGGGCAATACGTTTGGTTTAAT...CCAGCCACTGGCCCAGCTGAAATGATGGGGAAAGGAGTCCTTAGTCCTTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS-3UTR CAA 90 bp CCTGTAGAAAACCATTCCATTAAGACAGCAACAAGTGATCTGGATTCAATCTTTGTGATGAAGGGGACATaGGCTTCTCCGGCTGTGGCC +
Preference number: 5 (lower is better)
Translates to: PVENHSIKTATSDLDSIFVMKGT*ASPAVA
Trigger: GGCCACAGCCGGAGAAGCCAATGTCCCCTTCATCAC...AAAGATTGAATCCAGATCACTTGTTGCTGTCTTAATGGAATGGTTTTCTACAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 90 bp CAATTGAAAGTATTCCATCTTGACATTCTGACAGTTCTGATGTTGTaGAAGCATGCAGGCTTCATTCAACTCTGCTGTCGGACGTGGCCA +
Preference number: 5 (lower is better)
Translates to: QLKVFHLDILTVLML*KHAGFIQLCCRTWP
Trigger: TGGCCACGTCCGACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACATCAGAACTGTCAGAATGTCAAGATGGAATACTTTCAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS TCA 90 bp AGGATAATAAAGACTATGTCTCATACCACTGTAGTGTGGAGATTATaGAAAACCCTTTGGCAAGAAAGCCACAGGCTCCCAGTTCAAACC +
Preference number: 5 (lower is better)
Translates to: RIIKTMSHTTVVWRL*KTLWQESHRLPVQT
Trigger: GGTTTGAACTGGGAGCCTGTGGCTTTCTTGCCAAAGGGTTTTTCATAATCTCCACACTACAGTGGTATGAGACATAGTCTTTATTATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS TCA 90 bp GCACTACACTCTCATCACTGTAGCTGCACAGTCTTAATACTGGGATaGGTAACTTACTGTTTTGGCTACTCTTACTCATTTGTATTTCCA +
Preference number: 5 (lower is better)
Translates to: ALHSHHCSCTVLILG*VTYCFGYSYSFVFP
Trigger: TGGAAATACAAATGAGTAAGAGTAGCCAAAACAGTAAGTTACTCATCCCAGTATTAAGACTGTGCAGCTACAGTGATGAGAGTGTAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 90 bp ATAAGCATCATTAATAAGTATTCGTACTTCATCATCTATCAATCTTaGAGTGGCTTCACTGTAAGGTTTCTCCAATACCATGTCCCCCTG +
Preference number: 5 (lower is better)
Translates to: ISIINKYSYFIIYQS*SGFTVRFLQYHVPL
Trigger: CAGGGGGACATGGTATTGGAGAAACCTTACAGTGAAGCCACTGCAAGATTGATAGATGATGAAGTACGAATACTTATTAATGATGCTTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 72 bp CACTTTCCGGGCTCCATTCCACCCCACTGGCCTGCGTaGCAGTCCTCTTACCAGCACTACACTCTCATCACT +
Preference number: 6 (lower is better)
Translates to: HFPGSIPPHWPA*QSSYQHYTLIT
Trigger: AGTGATGAGAGTGTAGTGCTGGTAAGAGGACTGGCACGCAGGCCAGTGGGGTGGAATGGAGCCCGGAAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 72 bp GGTTCACTTTCCGGGCTCCATTCCACCCCACTGGCCTaGGTGCCAGTCCTCTTACCAGCACTACACTCTCAT +
Preference number: 6 (lower is better)
Translates to: GSLSGLHSTPLA*VPVLLPALHSH
Trigger: ATGAGAGTGTAGTGCTGGTAAGAGGACTGGCACGCAGGCCAGTGGGGTGGAATGGAGCCCGGAAAGTGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS TCA 72 bp CCGCTCCTTGTTCCAGTCCTTAAGGCCTTCTGGAAGTaGGGTGTCCTCATCCAAGCTGCCAGTGCCTTCCAC +
Preference number: 6 (lower is better)
Translates to: PLLVPVLKAFWK*GVLIQAASAFH
Trigger: GTGGAAGGCACTGGCAGCTTGGATGAGGACACCTCACTTCCAGAAGGCCTTAAGGACTGGAACAAGGAGCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS CCA 72 bp GTGGCACGACTGCTGCTTACTGTAGCCTCCGCCTCTTaGGTTCAAGTGATCCTCCCCATCTCCAGTGATTCT +
Preference number: 6 (lower is better)
Translates to: VARLLLTVASAS*VQVILPISSDS
Trigger: AGAATCACTGGAGATGGGGAGGATCACTTGAACCCAAGAGGCGGAGGCTACAGTAAGCAGCAGTCGTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CCA 72 bp AAGCATGCAGGCTTCATTCAACTCTGCTGTCGGACGTaGCCACACCCTCCTTTGAAGGAAGAGGGGTACAGC +
Preference number: 6 (lower is better)
Translates to: KHAGFIQLCCRT*PHPPLKEEGYS
Trigger: GCTGTACCCCTCTTCCTTCAAAGGAGGGTGTGGCCACGTCCGACAGCAGAGTTGAATGAAGCCTGCATGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 72 bp GAAAGCCACAGGCTCCCAGTTCAAACCCACTGCAACTaGTGCTTTATAGGAGCAAACTCTCCAGCTCTCGCC +
Preference number: 6 (lower is better)
Translates to: ESHRLPVQTHCN*CFIGANSPALA
Trigger: GGCGAGAGCTGGAGAGTTTGCTCCTATAAAGCAGCAGTTGCAGTGGGTTTGAACTGGGAGCCTGTGGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 72 bp CCTCCTTTGAAGGAAGAGGGGTACAGCAGGCCAAGATaGTCGGCAGCCTTTCCTTTCCAGTCCTCTTTTGCA +
Preference number: 6 (lower is better)
Translates to: PPLKEEGYSRPR*SAAFPFQSSFA
Trigger: TGCAAAAGAGGACTGGAAAGGAAAGGCTGCCGAGCATCTTGGCCTGCTGTACCCCTCTTCCTTCAAAGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CCA 72 bp AATGCACCAGCTGAAACCACAGTGGACAGACTGAGATaGCCTCCCTCTGGGCCTCTAGTTGGCAACTTTCTC +
Preference number: 6 (lower is better)
Translates to: NAPAETTVDRLR*PPSGPLVGNFL
Trigger: GAGAAAGTTGCCAACTAGAGGCCCAGAGGGAGGCCATCTCAGTCTGTCCACTGTGGTTTCAGCTGGTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 72 bp CTGATGTTGTGCAAGCATGCAGGCTTCATTCAACTCTaGTGTCGGACGTGGCCACACCCTCCTTTGAAGGAA +
Preference number: 6 (lower is better)
Translates to: LMLCKHAGFIQL*CRTWPHPPLKE
Trigger: TTCCTTCAAAGGAGGGTGTGGCCACGTCCGACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CAA 90 bp CACAATGAAGATACAGAATATTCTCATCATGCCCAGAAAGTTCCCTaGTACCCACTGGTAGGGAGTCTTTCCCTCCACACCCAACCCCAG +
Preference number: 6 (lower is better)
Translates to: HNEDTEYSHHAQKVP*YPLVGSLSLHTQPQ
Trigger: CTGGGGTTGGGTGTGGAGGGAAAGACTCCCTACCAGTGGGTACAAGGGAACTTTCTGGGCATGATGAGAATATTCTGTATCTTCATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CAA 90 bp GACTATGTCTCATACCACTGTAGTGTGGAGATTATGAAAAACCCTTaGGCAAGAAAGCCACAGGCTCCCAGTTCAAACCCACTGCAACTG +
Preference number: 6 (lower is better)
Translates to: DYVSYHCSVEIMKNP*ARKPQAPSSNPLQL
Trigger: CAGTTGCAGTGGGTTTGAACTGGGAGCCTGTGGCTTTCTTGCCAAAGGGTTTTTCATAATCTCCACACTACAGTGGTATGAGACATAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CCA 72 bp ACTGTAAGGTTTCTCCAATACCATGTCCCCCTGACGTaGGAGGTCAAAGGAGATTTGCCCAACCTTTTCATT +
Preference number: 6 (lower is better)
Translates to: TVRFLQYHVPLT*EVKGDLPNLFI
Trigger: AATGAAAAGGTTGGGCAAATCTCCTTTGACCTCCCACGTCAGGGGGACATGGTATTGGAGAAACCTTACAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS CAA 72 bp TACCATGTCCCCCTGACGTGGGAGGTCAAAGGAGATTaGCCCAACCTTTTCATTCATGCCAAACTGAACAAT +
Preference number: 6 (lower is better)
Translates to: YHVPLTWEVKGD*PNLFIHAKLNN
Trigger: ATTGTTCAGTTTGGCATGAATGAAAAGGTTGGGCAAATCTCCTTTGACCTCCCACGTCAGGGGGACATGGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS CAA 90 bp TTTCTCCAATACCATGTCCCCCTGACGTGGGAGGTCAAAGGAGATTaGCCCAACCTTTTCATTCATGCCAAACTGAACAATTTGGGCATA +
Preference number: 6 (lower is better)
Translates to: FLQYHVPLTWEVKGD*PNLFIHAKLNNLGI
Trigger: TATGCCCAAATTGTTCAGTTTGGCATGAATGAAAAGGTTGGGCAAATCTCCTTTGACCTCCCACGTCAGGGGGACATGGTATTGGAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS GCA 72 bp GTATTCCATCTTGACATTCTGACAGTTCTGATGTTGTaGAAGCATGCAGGCTTCATTCAACTCTGCTGTCGG +
Preference number: 6 (lower is better)
Translates to: VFHLDILTVLML*KHAGFIQLCCR
Trigger: CCGACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACATCAGAACTGTCAGAATGTCAAGATGGAATAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CAA 90 bp ACTCAATTGAAAGTATTCCATCTTGACATTCTGACAGTTCTGATGTaGTGCAAGCATGCAGGCTTCATTCAACTCTGCTGTCGGACGTGG +
Preference number: 6 (lower is better)
Translates to: TQLKVFHLDILTVLM*CKHAGFIQLCCRTW
Trigger: CCACGTCCGACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACATCAGAACTGTCAGAATGTCAAGATGGAATACTTTCAATTGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 72 bp GTGTGCTTAATGCCCACTCATATACCTTCTGGGAAATaGATGTTTAAATCTTTCGCCCATTGTTTTACTGGG +
Preference number: 6 (lower is better)
Translates to: VCLMPTHIPSGK*MFKSFAHCFTG
Trigger: CCCAGTAAAACAATGGGCGAAAGATTTAAACATGCATTTCCCAGAAGGTATATGAGTGGGCATTAAGCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CAA 72 bp AAAGTATTCCATCTTGACATTCTGACAGTTCTGATGTaGTGCAAGCATGCAGGCTTCATTCAACTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: KVFHLDILTVLM*CKHAGFIQLCC
Trigger: ACAGCAGAGTTGAATGAAGCCTGCATGCTTGCACAACATCAGAACTGTCAGAATGTCAAGATGGAATACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 72 bp GGTTCTAGAAATAAGTCCTTTGTCCTGTATATGTACTaGATGTATTTTTGGAGGGCGTGGCTTGCCTTTTTA +
Preference number: 6 (lower is better)
Translates to: GSRNKSFVLYMY*MYFWRAWLAFL
Trigger: TAAAAAGGCAAGCCACGCCCTCCAAAAATACATGCAGTACATATACAGGACAAAGGACTTATTTCTAGAACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS TCA 72 bp TCTCATCACTGTAGCTGCACAGTCTTAATACTGGGATaGGTAACTTACTGTTTTGGCTACTCTTACTCATTT +
Preference number: 6 (lower is better)
Translates to: SHHCSCTVLILG*VTYCFGYSYSF
Trigger: AAATGAGTAAGAGTAGCCAAAACAGTAAGTTACTCATCCCAGTATTAAGACTGTGCAGCTACAGTGATGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS TCA 72 bp GTGAGCGTTTCAACTGCTCCATATCCTTATCAACAATaGAGACTGTCTCTTCTTCATTTTAACCATTCTAGC +
Preference number: 6 (lower is better)
Translates to: VSVSTAPYPYQQ*RLSLLHFNHSS
Trigger: GCTAGAATGGTTAAAATGAAGAAGAGACAGTCTTCATTGTTGATAAGGATATGGAGCAGTTGAAACGCTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS CAA 72 bp GGCATATGCACTCTGAGTTACTTTTCTCAAGTCATCTaGAGCACCAGTTGTAATTCTTCCAAAGAAGATTTC +
Preference number: 6 (lower is better)
Translates to: GICTLSYFSQVI*STSCNSSKEDF
Trigger: GAAATCTTCTTTGGAAGAATTACAACTGGTGCTCAAGATGACTTGAGAAAAGTAACTCAGAGTGCATATGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000269143.8
CDS CAA 90 bp TTATTGAGTTCTAAGAGTTCTTTACAGGTTCTAGAAATAAGTCCTTaGTCCTGTATATGTACTGCATGTATTTTTGGAGGGCGTGGCTTG +
Preference number: 6 (lower is better)
Translates to: LLSSKSSLQVLEISP*SCICTACIFGGRGL
Trigger: CAAGCCACGCCCTCCAAAAATACATGCAGTACATATACAGGACAAAGGACTTATTTCTAGAACCTGTAAAGAACTCTTAGAACTCAATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS GCA 72 bp TTTACATTCCTATCAATAACGTGTGAGCGTTTCAACTaGTCCATATCCTTATCAACAATGAAGACTGTCTCT +
Preference number: 6 (lower is better)
Translates to: FTFLSITCERFN*SISLSTMKTVS
Trigger: AGAGACAGTCTTCATTGTTGATAAGGATATGGAGCAGTTGAAACGCTCACACGTTATTGATAGGAATGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1
CDS TCA 72 bp TCAATGAGTTTTGACAAACATAACATCAAGCCACAATaGAGATACAGAATATTCTCATCATGCCCAGAAAGT +
Preference number: 6 (lower is better)
Translates to: SMSFDKHNIKPQ*RYRIFSSCPES
Trigger: ACTTTCTGGGCATGATGAGAATATTCTGTATCTTCATTGTGGCTTGATGTTATGTTTGTCAAAACTCATTGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000588893.1
ENST00000683671.1