Pregenerated sensors for ACTC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000159251Ensembl transcript IDs: ENST00000290378.6, ENST00000560563.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTAGAAGCACAAACAAATTGCACGTGTGTAAACAAACTGTACAATaGTTGATGAAAGATGAGGGAAGGTGGTTTGGAAGACTCCAAGAA | + |
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Preference number: 1 (lower is better) Translates to: IRSTNKLHVCKQTVQ*LMKDEGRWFGRLQE Trigger: TTCTTGGAGTCTTCCAAACCACCTTCCCTCATCTTTCATCAATCATTGTACAGTTTGTTTACACACGTGCAATTTGTTTGTGCTTCTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000290378.6 |
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| CDS TCA 90 bp | TCCAGCTACTTGGTAGTGAAACTTACGGGAATAAGTCAGCTCTTGTaGACTAGCCCTTTTCCTGCAGATACGTGCTATTCAGTTACTACT | + |
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Preference number: 5 (lower is better) Translates to: SSYLVVKLTGISQLL*TSPFPADTCYSVTT Trigger: AGTAGTAACTGAATAGCACGTATCTGCAGGAAAAGGGCTAGTTCACAAGAGCTGACTTATTCCCGTAAGTTTCACTACCAAGTAGCTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560563.1 |
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| CDS TCA 90 bp | GCAGATACGTGCTATTCAGTTACTACTCTGTGTCATCCTTTATTTTaGGATGAACTCAGTGTGTCATCCTTTATTATATCACTAGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: ADTCYSVTTLCHPLF*DELSVSSFIISLEQ Trigger: CTGCTCTAGTGATATAATAAAGGATGACACACTGAGTTCATCTCAAAATAAAGGATGACACAGAGTAGTAACTGAATAGCACGTATCTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560563.1 |
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| CDS TCA 90 bp | TACGTGCTATTCAGTTACTACTCTGTGTCATCCTTTATTTTGAGATaGACTCAGTGTGTCATCCTTTATTATATCACTAGAGCAGAACAT | + |
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Preference number: 5 (lower is better) Translates to: YVLFSYYSVSSFILR*TQCVILYYITRAEH Trigger: ATGTTCTGCTCTAGTGATATAATAAAGGATGACACACTGAGTTCATCTCAAAATAAAGGATGACACAGAGTAGTAACTGAATAGCACGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560563.1 |
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| CDS TCA 72 bp | TTGGTAGTGAAACTTACGGGAATAAGTCAGCTCTTGTaGACTAGCCCTTTTCCTGCAGATACGTGCTATTCA | + |
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Preference number: 6 (lower is better) Translates to: LVVKLTGISQLL*TSPFPADTCYS Trigger: TGAATAGCACGTATCTGCAGGAAAAGGGCTAGTTCACAAGAGCTGACTTATTCCCGTAAGTTTCACTACCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560563.1 |
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| CDS CAA 72 bp | GCATTTAATGATGAGGAACTTGGAAAGTCCAGCTACTaGGTAGTGAAACTTACGGGAATAAGTCAGCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: AFNDEELGKSSY*VVKLTGISQLL Trigger: CAAGAGCTGACTTATTCCCGTAAGTTTCACTACCAAGTAGCTGGACTTTCCAAGTTCCTCATCATTAAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000560563.1 |
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