Pregenerated sensors for ACTA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000143632Ensembl transcript IDs: ENST00000366683.3, ENST00000366683.4, ENST00000366684.7, ENST00000684723.1
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATGGCAGCAACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGCTGGAGCTCGAAGATTCGTCGTCCTaGGAAGTCGCGTGCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: MAATEVVTKKVTAGWLELEDSSS*EVACWR Trigger: CCTCCAGCACGCGACTTCTCAGGACGACGAATCTTC...GAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGTTGCTGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000366683.3 ENST00000366684.7 |
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| 3UTR-3UTR CCA 90 bp | ACACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAAAGTGACTGCGGGGTaGCTGGAGCTCAGCCGCCCC | + |
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Preference number: 2 (lower is better) Translates to: TRYKHCVSLRWQQRKLLQKVTAG*LELSRP Trigger: GGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTT...TTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000366683.3 ENST00000366684.7 |
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| 3UTR-3UTR TCA 90 bp | GTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGAAGAAGATTCGTCGTCCTaGGAAGTCGCGTGCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: VINTVSVYDGSNGSCYKEEDSSS*EVACWR Trigger: CCTCCAGCACGCGACTTCTCAGGACGACGAATCTTC...TTCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000366683.3 ENST00000366684.7 |
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| 3UTR-3UTR GCA 90 bp | AAGTTAATGTATGTACACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACTACAAAGAAAGTGACTaGGGGGTGGCTGGAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KLMYVHVINTVSVYDGSNYKESD*GVAGAQ Trigger: CTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTA...GTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGTACATACATTAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000366683.3 ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | ACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGCTGGAGCTCAGCCGCCCCCCAGCACGATGCCGGTaGTCCTGCCGGAGGCGTAGA | + |
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Preference number: 4 (lower is better) Translates to: TEVVTKKVTAGWLELSRPPARCR*SCRRRR Trigger: TCTACGCCTCCGGCAGGACCACCGGCATCGTGCTGG...GGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGT 62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR GCA 90 bp | ACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGCTGGAGCTCAGCCGCCCCGCGGTGATCTCTTTCTaGATGCGGTCAGCGATCCCA | + |
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Preference number: 4 (lower is better) Translates to: TEVVTKKVTAGWLELSRPAVISF*MRSAIP Trigger: TGGGATCGCTGACCGCATGCAGAAAGAGATCACCGC...GGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR GCA 90 bp | ACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGCTGGAGCTCAGCCGCCCCTACAAAGAAAGTGACTaGGGGGTGGCTGGAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: TEVVTKKVTAGWLELSRPYKESD*GVAGAQ Trigger: CTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTA...GGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | TTAATGTATGTACACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGATCTCGGCTCGGGCCCTaGTCGCCGCGGAGGGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LMYVHVINTVSVYDGSNGSRLGP*SPRRGS Trigger: GCTTCCCCTCCGCGGCGACCAGGGCCCGAGCCGAGA...TCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGTACATACATTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR TCA 90 bp | CACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAATGGGCACGTTGTGGGTaGCGCCGTCGCCGGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: HVINTVSVYDGSNGSCYKWARCG*RRRRSP Trigger: TGGACTCCGGCGACGGCGTCACCCACAACGTGCCCA...TTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | AAGTTAATGTATGTACACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACCCGACCATGACGCCCTaGTGTCGGGGGCGGCCCACG | + |
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Preference number: 4 (lower is better) Translates to: KLMYVHVINTVSVYDGSNPTMTP*CRGRPT Trigger: CGTGGGCCGCCCCCGACACCAGGGCGTCATGGTCGG...GTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGTACATACATTAACTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | CACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAAAAGTGACTGCGGGGTaGCTGGAGCTCAGCCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: HVINTVSVYDGSNGSCYKKVTAG*LELSRP Trigger: GGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTT...TTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTG 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | ACACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAACGCACACGAGGGCGGTaGTCTCGTCTTCGTCGCACA | + |
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Preference number: 4 (lower is better) Translates to: TRYKHCVSLRWQQRKLLQRTRGR*SRLRRT Trigger: TGTGCGACGAAGACGAGACCACCGCCCTCGTGTGCG...TTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR TCA 90 bp | CGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGATGGGTGCCAGCGCGGTaGTCTCTTTCTGCATGCGGT | + |
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Preference number: 4 (lower is better) Translates to: RYKHCVSLRWQQRKLLQRWVPAR*SLSACG Trigger: ACCGCATGCAGAAAGAGATCACCGCGCTGGCACCCA...TCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR GCA 90 bp | GTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGAAGCGGGTAGCTACAACTaGTACTCTCGGCTCGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VINTVSVYDGSNGSCYKEAGSYN*YSRLGP Trigger: GGGCCCGAGCCGAGAGTAGCAGTTGTAGCTACCCGC...TTCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR GCA 90 bp | CGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGAAGGTGGTCTCGTGAATaGCCGCCGACTCCATACCGA | + |
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Preference number: 4 (lower is better) Translates to: RYKHCVSLRWQQRKLLQRRWSRE*PPTPYR Trigger: TCGGTATGGAGTCGGCGGGCATTCACGAGACCACCT...TCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | CACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAATCTCGCGCTCAGCTGTaGTCACGAAGGAGTAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: HVINTVSVYDGSNGSCYKSRAQL*SRRSSH Trigger: GTGGCTACTCCTTCGTGACCACAGCTGAGCGCGAGA...TTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR TCA 90 bp | TTAATGTATGTACACGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAGAAGATTCGTCGTCCTaGGAAGTCGCGTGCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LMYVHVINTVSVYDGSNGEDSSS*EVACWR Trigger: CCTCCAGCACGCGACTTCTCAGGACGACGAATCTTC...TCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGTACATACATTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | CAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGTGTGTCAGTTTACGATaGCAGCAACGGAAGTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: QFTMAATEVVTKKVTAGWCVSLR*QQRKLL Trigger: TAACAACTTCCGTTGCTGCCATCGTAAACTGACACA...CCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS-3UTR CCA 90 bp | CGTTATAAACACTGTGTCAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGAATTGTGTCTAGTTTCTaGGCGGGTAGCTACAACTGC | + |
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Preference number: 4 (lower is better) Translates to: RYKHCVSLRWQQRKLLQRIVSSF*AGSYNC Trigger: GCAGTTGTAGCTACCCGCCCAGAAACTAGACACAAT...TCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS CCA 90 bp | CCTGAGGGGACCCAGGGCCACCAGCGGAGGCCGCCCCGGCAGTGCTaGCAACACTCGGGAGCGCTGCGCAGAGGAAGAAAGCTGCCTCGC | + |
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Preference number: 5 (lower is better) Translates to: PEGTQGHQRRPPRQC*QHSGALRRGRKLPR Trigger: GCGAGGCAGCTTTCTTCCTCTGCGCAGCGCTCCCGAGTGTTGCCAGCACTGCCGGGGCGGCCTCCGCTGGTGGCCCTGGGTCCCCTCAGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS GCA 90 bp | CTGCCTGAGGGGACCCAGGGCCACCAGCGGAGGCCGCCCCGGCAGTaGTGGCAACACTCGGGAGCGCTGCGCAGAGGAAGAAAGCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: LPEGTQGHQRRPPRQ*WQHSGALRRGRKLP Trigger: AGGCAGCTTTCTTCCTCTGCGCAGCGCTCCCGAGTGTTGCCAGCACTGCCGGGGCGGCCTCCGCTGGTGGCCCTGGGTCCCCTCAGGCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CCA 90 bp | ACGCCCTGGGCGGGTAGCTACAACTGCTACTCTCGGCTCGGGCCCTaGTCGCCGCGGAGGGGAAGCGAGGCTTCACTTGGCGCTGTCCGC | + |
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Preference number: 5 (lower is better) Translates to: TPWAGSYNCYSRLGP*SPRRGSEASLGAVR Trigger: GCGGACAGCGCCAAGTGAAGCCTCGCTTCCCCTCCGCGGCGACCAGGGCCCGAGCCGAGAGTAGCAGTTGTAGCTACCCGCCCAGGGCGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS GCA 90 bp | ACCAGCGGAGGCCGCCCCGGCAGTGCTGGCAACACTCGGGAGCGCTaGGCAGAGGAAGAAAGCTGCCTCGCCACACCCCAGAGGGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: TSGGRPGSAGNTRER*AEEESCLATPQRVK Trigger: CTTGACCCTCTGGGGTGTGGCGAGGCAGCTTTCTTCCTCTGCGCAGCGCTCCCGAGTGTTGCCAGCACTGCCGGGGCGGCCTCCGCTGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CCA 90 bp | AGTTTCTGGGCGGGTAGCTACAACTGCTACTCTCGGCTCGGGCCCTaGTCGCCGCGGAGGGGAAGCGAGGCTTCACTTGGCGCTGTCCGC | + |
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Preference number: 5 (lower is better) Translates to: SFWAGSYNCYSRLGP*SPRRGSEASLGAVR Trigger: GCGGACAGCGCCAAGTGAAGCCTCGCTTCCCCTCCGCGGCGACCAGGGCCCGAGCCGAGAGTAGCAGTTGTAGCTACCCGCCCAGAAACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000366683.4 ENST00000366684.7 |
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| CDS-3UTR CAA 90 bp | CAGTTTACGATGGCAGCAACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGACCAGGCCGGAGCCATaGTCGCACACGAGGGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: QFTMAATEVVTKKVTAGWTRPEP*SHTRAV Trigger: CACCGCCCTCGTGTGCGACAATGGCTCCGGCCTGGT...CCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGTTGCTGCCATCGTAAACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS TCA 90 bp | GGTCCTGCACGAGGGGGTGTTTCTTTCTACCAGCAGCACCTGGTGTaGAGCAAAGGACTTCCCCATTGGAGAGAGGCAGTGACGGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: GPARGGVSFYQQHLV*SKGLPHWREAVTVF Trigger: GAAGACCGTCACTGCCTCTCTCCAATGGGGAAGTCCTTTGCTTCACACCAGGTGCTGCTGGTAGAAAGAAACACCCCCTCGTGCAGGACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS-3UTR CAA 90 bp | ATGGCAGCAACGGAAGTTGTTACAAAGAAAGTGACTGCGGGGTGGCTGGAGCTCCGTCTTCGTCGCACATaGTGTCTAGTTTCTGGGCGG | + |
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Preference number: 5 (lower is better) Translates to: MAATEVVTKKVTAGWLELRLRRT*CLVSGR Trigger: CCGCCCAGAAACTAGACACAATGTGCGACGAAGACG...GAGCTCCAGCCACCCCGCAGTCACTTTCTTTGTAACAACTTCCGTTGCTGCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366684.7 |
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| CDS GCA 72 bp | GGCCGCCCCGGCAGTGCTGGCAACACTCGGGAGCGCTaGGCAGAGGAAGAAAGCTGCCTCGCCACACCCCAG | + |
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Preference number: 6 (lower is better) Translates to: GRPGSAGNTRER*AEEESCLATPQ Trigger: CTGGGGTGTGGCGAGGCAGCTTTCTTCCTCTGCGCAGCGCTCCCGAGTGTTGCCAGCACTGCCGGGGCGGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS GCA 72 bp | ATACCGACCATGACGCCCTGGGCGGGTAGCTACAACTaGTACTCTCGGCTCGGGCCCTGGTCGCCGCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: IPTMTPWAGSYN*YSRLGPWSPRR Trigger: CCTCCGCGGCGACCAGGGCCCGAGCCGAGAGTAGCAGTTGTAGCTACCCGCCCAGGGCGTCATGGTCGGTAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CCA 72 bp | GCGGGTAGCTACAACTGCTACTCTCGGCTCGGGCCCTaGTCGCCGCGGAGGGGAAGCGAGGCTTCACTTGGC | + |
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Preference number: 6 (lower is better) Translates to: AGSYNCYSRLGP*SPRRGSEASLG Trigger: GCCAAGTGAAGCCTCGCTTCCCCTCCGCGGCGACCAGGGCCCGAGCCGAGAGTAGCAGTTGTAGCTACCCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000366683.4 ENST00000366684.7 ENST00000684723.1 |
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| CDS GCA 72 bp | GGCAACACTCGGGAGCGCTGCGCAGAGGAAGAAAGCTaGCTCGCCACACCCCAGAGGGTCAAGTCAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: GNTRERCAEEES*LATPQRVKSGH Trigger: GTGGCCTGACTTGACCCTCTGGGGTGTGGCGAGGCAGCTTTCTTCCTCTGCGCAGCGCTCCCGAGTGTTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS GCA 72 bp | CACATTGTGTCTAGTTTCTGGGCGGGTAGCTACAACTaGTACTCTCGGCTCGGGCCCTGGTCGCCGCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: HIVSSFWAGSYN*YSRLGPWSPRR Trigger: CCTCCGCGGCGACCAGGGCCCGAGCCGAGAGTAGCAGTTGTAGCTACCCGCCCAGAAACTAGACACAATGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000366683.4 ENST00000366684.7 |
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| CDS TCA 72 bp | AGGCCACCACTAGCTGCCAGTGATCTGGAATGGATCTaGTCCACTGCAGAAACCGGCAGGGGAGCATGGGAA | + |
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Preference number: 6 (lower is better) Translates to: RPPLAASDLEWI*STAETGRGAWE Trigger: TTCCCATGCTCCCCTGCCGGTTTCTGCAGTGGATCAGATCCATTCCAGATCACTGGCAGCTAGTGGTGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CCA 72 bp | TGGGAGGACCCCTTGAGCTCAATTAGAGGATACAGTTaGGCTCTGATCACACCACTGCTCTCCACCGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: WEDPLSSIRGYS*ALITPLLSTVG Trigger: GCCCACGGTGGAGAGCAGTGGTGTGATCAGAGCCCAACTGTATCCTCTAATTGAGCTCAAGGGGTCCTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS TCA 72 bp | CGAGGGGGTGTTTCTTTCTACCAGCAGCACCTGGTGTaGAGCAAAGGACTTCCCCATTGGAGAGAGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: RGGVSFYQQHLV*SKGLPHWREAV Trigger: CACTGCCTCTCTCCAATGGGGAAGTCCTTTGCTTCACACCAGGTGCTGCTGGTAGAAAGAAACACCCCCTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CAA 90 bp | AAGCAAAGGACTTCCCCATTGGAGAGAGGCAGTGACGGTCTTCACTaGCAAATTAAAACTCATTTATTAAGCCTGGACATAGTGGCACAG | + |
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Preference number: 6 (lower is better) Translates to: KQRTSPLERGSDGLH*QIKTHLLSLDIVAQ Trigger: CTGTGCCACTATGTCCAGGCTTAATAAATGAGTTTTAATTTGCAAGTGAAGACCGTCACTGCCTCTCTCCAATGGGGAAGTCCTTTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CCA 72 bp | AGATGTAAGTTTTGTCTTCCAAGGAGCCCATTCATTTaGGGTATCGTGAAAAGTGACTTAAGAGGATGTGGG | + |
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Preference number: 6 (lower is better) Translates to: RCKFCLPRSPFI*GIVKSDLRGCG Trigger: CCCACATCCTCTTAAGTCACTTTTCACGATACCCCAAATGAATGGGCTCCTTGGAAGACAAAACTTACATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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| CDS CAA 72 bp | ACTTCCCCATTGGAGAGAGGCAGTGACGGTCTTCACTaGCAAATTAAAACTCATTTATTAAGCCTGGACATA | + |
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Preference number: 6 (lower is better) Translates to: TSPLERGSDGLH*QIKTHLLSLDI Trigger: TATGTCCAGGCTTAATAAATGAGTTTTAATTTGCAAGTGAAGACCGTCACTGCCTCTCTCCAATGGGGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000684723.1 |
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