Pregenerated sensors for ABCE1 (Homo sapiens)
Ensembl gene IDs: ENSG00000164163Ensembl transcript IDs: ENST00000507193.5, ENST00000509593.1, ENST00000510321.1, ENST00000515678.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGCGAACACTTCCTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCATGGTCTCGATCTCCTaGCCTCGTGATCTGCTGGCC | + |
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Preference number: 2 (lower is better) Translates to: GEHFLQALPPRFTPFSCLMVSIS*PRDLLA Trigger: GGCCAGCAGATCACGAGGTCAGGAGATCGAGACCAT...GAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGGAAGTGTTCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507193.5 |
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| CDS-3UTR GCA 90 bp | GGCGAACACTTCCTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCCTGGCGAACACTTCCTaGAAGCTCTGCCTCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: GEHFLQALPPRFTPFSCLLANTS*KLCLPG Trigger: ACCTGGGAGGCAGAGCTTGCAGGAAGTGTTCGCCAG...GAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGGAAGTGTTCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507193.5 |
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| CDS-3UTR TCA 90 bp | GGCGAACACTTCCTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCGGGATAGGCAACCTGTaGAGTTTGAAGGCATTGGCA | + |
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Preference number: 4 (lower is better) Translates to: GEHFLQALPPRFTPFSCLGIGNL*SLKALA Trigger: TGCCAATGCCTTCAAACTTCACAGGTTGCCTATCCC...GAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGGAAGTGTTCGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507193.5 |
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| CDS-3UTR TCA 90 bp | GGCGAACACTTCCTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGGCGTGAGCTAAGTTaGTTTGGGACTAATTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GEHFLQALPPRFTPFSCLRRELS*FGTNFL Trigger: CAGAAAATTAGTCCCAAATCAACTTAGCTCACGCCT...GAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGGAAGTGTTCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507193.5 |
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| CDS-3UTR CAA 90 bp | GGCGAACACTTCCTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCGCAATTCTCGTTAACTaGTCTGCCATAACTGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: GEHFLQALPPRFTPFSCLAILVN*SAITGR Trigger: TCGCCCAGTTATGGCAGACAAGTTAACGAGAATTGC...GAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGGAAGTGTTCGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507193.5 |
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| CDS CCA 90 bp | CTGGTGAGGGATTCCACACTGAAGCCTAAACACTACTCTTCCACATaGTCCCATCCAGTCCCCAATACCAATGATCTCAGGAGTCACAGA | + |
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Preference number: 5 (lower is better) Translates to: LVRDSTLKPKHYSST*SHPVPNTNDLRSHR Trigger: TCTGTGACTCCTGAGATCATTGGTATTGGGGACTGGATGGGACCATGTGGAAGAGTAGTGTTTAGGCTTCAGTGTGGAATCCCTCACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510321.1 |
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| CDS TCA 90 bp | AAGAGTTCTTTATACATGCTGGATACAAGTCCTTTATTGGATATATaGTGTGCAAATGTTTCTCCCATCTTGTGGGTAAAGCCTTTTCAC | + |
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Preference number: 5 (lower is better) Translates to: KSSLYMLDTSPLLDI*CANVSPILWVKPFH Trigger: GTGAAAAGGCTTTACCCACAAGATGGGAGAAACATTTGCACATCATATATCCAATAAAGGACTTGTATCCAGCATGTATAAAGAACTCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510321.1 |
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| CDS GCA 90 bp | TTCTTTATACATGCTGGATACAAGTCCTTTATTGGATATATGATGTaGAAATGTTTCTCCCATCTTGTGGGTAAAGCCTTTTCACCTTCT | + |
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Preference number: 5 (lower is better) Translates to: FFIHAGYKSFIGYMM*KCFSHLVGKAFSPS Trigger: AGAAGGTGAAAAGGCTTTACCCACAAGATGGGAGAAACATTTGCACATCATATATCCAATAAAGGACTTGTATCCAGCATGTATAAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510321.1 |
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| CDS CCA 90 bp | TGTTATATTAAGCACACTTGTAGGACAGTATACATAATCAAAATATaGCTAGGAGCAAGATATTTACCGTTTGACAACTCGAGCTGCCAT | + |
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Preference number: 5 (lower is better) Translates to: CYIKHTCRTVYIIKI*LGARYLPFDNSSCH Trigger: ATGGCAGCTCGAGTTGTCAAACGGTAAATATCTTGCTCCTAGCCATATTTTGATTATGTATACTGTCCTACAAGTGTGCTTAATATAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510321.1 |
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| CDS CCA 72 bp | GATTCCACACTGAAGCCTAAACACTACTCTTCCACATaGTCCCATCCAGTCCCCAATACCAATGATCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: DSTLKPKHYSST*SHPVPNTNDLR Trigger: CCTGAGATCATTGGTATTGGGGACTGGATGGGACCATGTGGAAGAGTAGTGTTTAGGCTTCAGTGTGGAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510321.1 |
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| CDS GCA 72 bp | TTCTCCCATCTTGTGGGTAAAGCCTTTTCACCTTCTTaGTGTTGTCAATTTGCAGCACAAAATACATTAGGT | + |
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Preference number: 6 (lower is better) Translates to: FSHLVGKAFSPS*CCQFAAQNTLG Trigger: ACCTAATGTATTTTGTGCTGCAAATTGACAACAGCAAGAAGGTGAAAAGGCTTTACCCACAAGATGGGAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000510321.1 |
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| CDS TCA 72 bp | TTTTACCCGTTCCTGGCAACACAACATATGACAGTTTaGTCTGAAAGATGCTTGACGTTTAAAGTAAATCAC | + |
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Preference number: 6 (lower is better) Translates to: FYPFLATQHMTV*SERCLTFKVNH Trigger: GTGATTTACTTTAAACGTCAAGCATCTTTCAGATCAAACTGTCATATGTTGTGTTGCCAGGAACGGGTAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000509593.1 ENST00000515678.5 |
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