Pregenerated sensors for AADAC (Homo sapiens)

Ensembl gene IDs: ENSG00000114771

Ensembl transcript IDs: ENST00000232892.12, ENST00000488869.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCATGGCTCCTCAACGTTATCTGGGAGAGGCGTATAAATATAATATaGTATGAGGATCCCCACAATCAGAAGGTACAGCGATTTTCTTCC	+
Preference number: 5 (lower is better) Translates to: PWLLNVIWERRINII*YEDPHNQKVQRFSS Trigger: GGAAGAAAATCGCTGTACCTTCTGATTGTGGGGATCCTCATAGCATATTATATTTATACGCCTCTCCCAGATAACGTTGAGGAGCCATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000232892.12 ENST00000488869.1
CDS CCA 90 bp	CAGAAGGTACAGCGATTTTCTTCCCATGGTGAACGTCCCGCTTCTTaGTCTCTAGAAACACAGAAAGTAAACCTACATGATATGCCTGAA	+
Preference number: 5 (lower is better) Translates to: QKVQRFSSHGERPAS*SLETQKVNLHDMPE Trigger: TTCAGGCATATCATGTAGGTTTACTTTCTGTGTTTCTAGAGACCAAGAAGCGGGACGTTCACCATGGGAAGAAAATCGCTGTACCTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488869.1
CDS TCA 90 bp	ACTTCATCAAAGCTCCCGACAACCTTAAAGGAATCCATAAAATGGTaGAGTCCCAGGAGCTCCACAAATGTAGCCAAATTTTGTATAGTT	+
Preference number: 5 (lower is better) Translates to: TSSKLPTTLKESIKW*SPRSSTNVAKFCIV Trigger: AACTATACAAAATTTGGCTACATTTGTGGAGCTCCTGGGACTTCACCATTTTATGGATTCCTTTAAGGTTGTCGGGAGCTTTGATGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000232892.12 ENST00000488869.1
CDS TCA 72 bp	CCACAATCAGAAGGTACAGCGATTTTCTTCCCATGGTaGACGTCCCGCTTCTTGGTCTCTAGAAACACAGAA	+
Preference number: 6 (lower is better) Translates to: PQSEGTAIFFPW*TSRFLVSRNTE Trigger: TTCTGTGTTTCTAGAGACCAAGAAGCGGGACGTTCACCATGGGAAGAAAATCGCTGTACCTTCTGATTGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000232892.12 ENST00000488869.1
CDS TCA 72 bp	AAGCTCCCGACAACCTTAAAGGAATCCATAAAATGGTaGAGTCCCAGGAGCTCCACAAATGTAGCCAAATTT	+
Preference number: 6 (lower is better) Translates to: KLPTTLKESIKW*SPRSSTNVAKF Trigger: AAATTTGGCTACATTTGTGGAGCTCCTGGGACTTCACCATTTTATGGATTCCTTTAAGGTTGTCGGGAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000232892.12 ENST00000488869.1
CDS GCA 72 bp	CTCAACGTTATCTGGGAGAGGCGTATAAATATAATATaGTATGAGGATCCCCACAATCAGAAGGTACAGCGA	+
Preference number: 6 (lower is better) Translates to: LNVIWERRINII*YEDPHNQKVQR Trigger: TCGCTGTACCTTCTGATTGTGGGGATCCTCATAGCATATTATATTTATACGCCTCTCCCAGATAACGTTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000232892.12 ENST00000488869.1
CDS TCA 72 bp	CGTTATCTGGGAGAGGCGTATAAATATAATATGCTATaGGGATCCCCACAATCAGAAGGTACAGCGATTTTC	+
Preference number: 6 (lower is better) Translates to: RYLGEAYKYNML*GSPQSEGTAIF Trigger: GAAAATCGCTGTACCTTCTGATTGTGGGGATCCTCATAGCATATTATATTTATACGCCTCTCCCAGATAACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000232892.12 ENST00000488869.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu