Pregenerated sensors for 7SK (Homo sapiens)
Ensembl gene IDs: ENSG00000202198, ENSG00000265903, ENSG00000271394, ENSG00000273591, ENSG00000274303, ENSG00000276626Ensembl transcript IDs: ENST00000365328.1, ENST00000581358.1, ENST00000581402.1, ENST00000581577.1, ENST00000581605.1, ENST00000583754.1, ENST00000603504.1, ENST00000612110.1, ENST00000612820.1, ENST00000615477.1, ENST00000621414.1, ENST00000621677.1, ENST00000622040.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCACATaGAGCGGTGAGGGAGGAAGGGGACACCCGCCTAGCCAGCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: GRPLRPSAQLREGRT*SGEGGRGHPPSQPD Trigger: ATCTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000365328.1 |
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| CDS TCA 90 bp | TTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTaGCCGAAGACCGGTCCTCCTCTATCGGGGATGGTCGTCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LFGGSSRGAQLLVYP*PKTGPPLSGMVVLF Trigger: GAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000365328.1 |
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| CDS CCA 90 bp | CGCAGCTACTCGTATACCCTTAGCCGAAGACTGGTCCTCCTCTATTaGGGATGGTCCTCCTCTTCAACTGAGCACACAGCTTCAGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: RSYSYTLSRRLVLLY*GWSSSSTEHTASGG Trigger: CCCTCCTGAAGCTGTGTGCTCAGTTGAAGAGGAGGACCATCCCCAATAGAGGAGGACCAGTCTTCGGCTAAGGGTATACGAGTAGCTGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000581358.1 ENST00000581402.1 ENST00000581577.1 ENST00000581605.1 ENST00000583754.1 |
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| CDS CCA 90 bp | TGTCTGGAGTCTTGGAAGTTTGACTACCCTACATTCTCCTACAAATaGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CLESWKFDYPTFSYK*TLRACLEVLAGERS Trigger: GCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAATGTAGGGTAGTCAAACTTCCAAGACTCCAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS CCA 72 bp | ACCCTTAGCCGAAGACTGGTCCTCCTCTATTGGGGATaGTCCTCCTCTTCAACTGAGCACACAGCTTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: TLSRRLVLLYWG*SSSSTEHTASG Trigger: TCCTGAAGCTGTGTGCTCAGTTGAAGAGGAGGACCATCCCCAATAGAGGAGGACCAGTCTTCGGCTAAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000581358.1 ENST00000581402.1 ENST00000581577.1 ENST00000581605.1 ENST00000583754.1 |
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| CDS CAA 72 bp | GACCTAAGGCTAATCCCCCAACTCTCTGGCAAGGTCTaGACTGAGCACACAGCCTCAGAAGTGATGCACACG | + |
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Preference number: 6 (lower is better) Translates to: DLRLIPQLSGKV*TEHTASEVMHT Trigger: CGTGTGCATCACTTCTGAGGCTGTGTGCTCAGTCAAGACCTTGCCAGAGAGTTGGGGGATTAGCCTTAGGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000612820.1 |
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| CDS TCA 72 bp | GGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTaGCCAAAGAACAGTCCTCCTCTATTGGGGAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: GSSRGAQLLVYP*PKNSPPLLGKV Trigger: AACCTTCCCCAATAGAGGAGGACTGTTCTTTGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS CCA 72 bp | TCGTATACCCTTAGCCGAAGACTGGTCCTCCTCTATTaGGGATGGTCCTCCTCTTCAACTGAGCACACAGCT | + |
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Preference number: 6 (lower is better) Translates to: SYTLSRRLVLLY*GWSSSSTEHTA Trigger: AGCTGTGTGCTCAGTTGAAGAGGAGGACCATCCCCAATAGAGGAGGACCAGTCTTCGGCTAAGGGTATACGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000581358.1 ENST00000581402.1 ENST00000581577.1 ENST00000581605.1 ENST00000583754.1 |
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| CDS CCA 72 bp | AAGAGGTCTGGTTTCCCAGATGGTCCAAATTACTCCTaGTCACCAAGAAGACAGACAGCACCAACTGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: KRSGFPDGPNYS*SPRRQTAPTGH Trigger: GTGGCCAGTTGGTGCTGTCTGTCTTCTTGGTGACCAGGAGTAATTTGGACCATCTGGGAAACCAGACCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000612820.1 |
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| CDS CAA 90 bp | GAGTCTTGGAAGTTTGACTACCCTACATTCTCCTACAAATGGACCTaGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG | + |
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Preference number: 6 (lower is better) Translates to: ESWKFDYPTFSYKWT*RACLEVLAGERSYS Trigger: CGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAATGTAGGGTAGTCAAACTTCCAAGACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS CAA 72 bp | CATGAAGTTCACATCTTGTCTCTGGACCTTGAGAGCTaGTTTGGAGATTCTAGCAGGGGAGCGCAGCTACTC | + |
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Preference number: 6 (lower is better) Translates to: HEVHILSLDLES*FGDSSRGAQLL Trigger: GAGTAGCTGCGCTCCCCTGCTAGAATCTCCAAACAAGCTCTCAAGGTCCAGAGACAAGATGTGAACTTCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000581358.1 ENST00000581402.1 ENST00000581577.1 ENST00000581605.1 ENST00000583754.1 |
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| CDS CAA 90 bp | TTTGACTACCCTACATTCTCCTACAAATGGACCTTGAGAGCTTGTTaGGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: FDYPTFSYKWTLRAC*EVLAGERSYSYTLD Trigger: GTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAATGTAGGGTAGTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS CCA 72 bp | CACACTGCCGCATGCAACACCTCATTTGGATGTGTCTaGAGTCTTGGAAGTTTGACTACCCTACATTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: HTAACNTSFGCV*SLGSLTTLHSP Trigger: AGGAGAATGTAGGGTAGTCAAACTTCCAAGACTCCAGACACATCCAAATGAGGTGTTGCATGCGGCAGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS CCA 72 bp | CGCATGCAACACCTCATTTGGATGTGTCTGGAGTCTTaGAAGTTTGACTACCCTACATTCTCCTACAAATGG | + |
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Preference number: 6 (lower is better) Translates to: RMQHLIWMCLES*KFDYPTFSYKW Trigger: CCATTTGTAGGAGAATGTAGGGTAGTCAAACTTCCAAGACTCCAGACACATCCAAATGAGGTGTTGCATGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS TCA 72 bp | ACACCTCATTTGGATGTGTCTGGAGTCTTGGAAGTTTaGCTACCCTACATTCTCCTACAAATGGACCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: TPHLDVSGVLEV*LPYILLQMDLE Trigger: CTCAAGGTCCATTTGTAGGAGAATGTAGGGTAGTCAAACTTCCAAGACTCCAGACACATCCAAATGAGGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603504.1 ENST00000621677.1 |
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| CDS TCA 72 bp | GTGGTCATCTTTAATCTACTACAGACACTGTATCCTTaGTCTCAGAATGATGCCTCTTTGTCTGGAAAGGGC | + |
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Preference number: 6 (lower is better) Translates to: VVIFNLLQTLYP*SQNDASLSGKG Trigger: GCCCTTTCCAGACAAAGAGGCATCATTCTGAGATCAAGGATACAGTGTCTGTAGTAGATTAAAGATGACCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000612110.1 ENST00000615477.1 ENST00000622040.1 |
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| CDS CCA 72 bp | ACCAAGCTTATTGCTTCAGAAGTGGTGCAAATAAACTaGTTGGGGAGTCAGCTAATACTTATCAAGACAACC | + |
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Preference number: 6 (lower is better) Translates to: TKLIASEVVQIN*LGSQLILIKTT Trigger: GGTTGTCTTGATAAGTATTAGCTGACTCCCCAACCAGTTTATTTGCACCACTTCTGAAGCAATAAGCTTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621414.1 |
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| CDS CAA 72 bp | AAGCTTATTGCTTCAGAAGTGGTGCAAATAAACTGGTaGGGGAGTCAGCTAATACTTATCAAGACAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: KLIASEVVQINW*GSQLILIKTTR Trigger: CCTGGTTGTCTTGATAAGTATTAGCTGACTCCCCAACCAGTTTATTTGCACCACTTCTGAAGCAATAAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621414.1 |
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| CDS CAA 90 bp | TTTTCAACCAAGCTTATTGCTTCAGAAGTGGTGCAAATAAACTGGTaGGGGAGTCAGCTAATACTTATCAAGACAACCAGGTCTATCAAC | + |
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Preference number: 6 (lower is better) Translates to: FSTKLIASEVVQINW*GSQLILIKTTRSIN Trigger: GTTGATAGACCTGGTTGTCTTGATAAGTATTAGCTGACTCCCCAACCAGTTTATTTGCACCACTTCTGAAGCAATAAGCTTGGTTGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621414.1 |
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