Pregenerated sensors for 5S_RRNA (Homo sapiens)
Ensembl gene IDs: ENSG00000266615, ENSG00000273928, ENSG00000277584, ENSG00000278457, ENSG00000285674, ENSG00000285776, ENSG00000285912Ensembl transcript IDs: ENST00000577302.1, ENST00000577378.1, ENST00000579807.1, ENST00000579922.1, ENST00000580910.1, ENST00000581845.1, ENST00000611128.1, ENST00000619241.1, ENST00000620265.1, ENST00000647846.1, ENST00000648813.1, ENST00000650361.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TATTACCAGGCGGAGTCCCATCCAAGTACTAACCAGGACCGACCCTaGTTAGCTTCAACAGATCAGAGGCGAGCAGGCGCCTTCAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: YYQAESHPSTNQDRP*LASTDQRRAGAFRV Trigger: CACCCTGAAGGCGCCTGCTCGCCTCTGATCTGTTGAAGCTAAGCAGGGTCGGTCCTGGTTAGTACTTGGATGGGACTCCGCCTGGTAATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620265.1 |
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| CDS GCA 90 bp | CACTTTTATACATTCTCCCATCCAAGTACTAACCAGGCCCGACCCTaGTTAGCTTCCGAGATCAGACGAGATCGGGCGCGTTCAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: HFYTFSHPSTNQARP*LASEIRRDRARSGW Trigger: CCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGAATGTATAAAAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611128.1 |
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| CDS GCA 90 bp | TATTCCCAGGTGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTaGTTAGCTTCCAAGATCAGACGAGATCAGGCTCATTCAGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: YSQVVSHPSTNQARP*LASKIRRDQAHSGW Trigger: CCACCCTGAATGAGCCTGATCTCGTCTGATCTTGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCACCTGGGAATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647846.1 |
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| CDS GCA 90 bp | GTGGTCTCCCATCCAAGTACTAACCAGGTCCGACACTGCTTAGCTTaGGAGGTGAGACGAGGATCAGATGCTTTTAGGGTGGTATGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VVSHPSTNQVRHCLA*EVRRGSDAFRVVWP Trigger: TGGCCATACCACCCTAAAAGCATCTGATCCTCGTCTCACCTCGCAAGCTAAGCAGTGTCGGACCTGGTTAGTACTTGGATGGGAGACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648813.1 |
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| CDS TCA 90 bp | GCCAATGTCTCACGCGCATTCTCCCATCCAAGTACTAACCAGACCTaGCCCTGCTTAGCTTCTGAGATCAGAGGAGATGATAGGACACCT | + |
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Preference number: 5 (lower is better) Translates to: ANVSRAFSHPSTNQT*PCLASEIRGDDRTP Trigger: AGGTGTCCTATCATCTCCTCTGATCTCAGAAGCTAAGCAGGGTCAGGTCTGGTTAGTACTTGGATGGGAGAATGCGCGTGAGACATTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000577302.1 ENST00000577378.1 ENST00000579807.1 ENST00000579922.1 ENST00000580910.1 ENST00000581845.1 |
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| CDS GCA 72 bp | GGCGGAATCCATCCAAGTACTAACCAGGCCGGACCCTaGTTAGCTTCACGAGCTCAGAGGAGCTGGGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: GGIHPSTNQAGP*LASRAQRSWGA Trigger: CGCGCCCCAGCTCCTCTGAGCTCGTGAAGCTAAGCAGGGTCCGGCCTGGTTAGTACTTGGATGGATTCCGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619241.1 |
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| CDS GCA 72 bp | GCGGAGTCCCATCCAAGTACTAACCAGGACCGACCCTaGTTAGCTTCAACAGATCAGAGGCGAGCAGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: AESHPSTNQDRP*LASTDQRRAGA Trigger: GGCGCCTGCTCGCCTCTGATCTGTTGAAGCTAAGCAGGGTCGGTCCTGGTTAGTACTTGGATGGGACTCCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620265.1 |
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| CDS TCA 72 bp | TCCCAGGCAGTCTCCCATCCACGTACTAACCAGGCCTaGCCCTGCTTAGCTTCCCAGATCAGACTAGATCGG | + |
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Preference number: 6 (lower is better) Translates to: SQAVSHPRTNQA*PCLASQIRLDR Trigger: CCGATCTAGTCTGATCTGGGAAGCTAAGCAGGGTCAGGCCTGGTTAGTACGTGGATGGGAGACTGCCTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650361.1 |
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| CDS GCA 72 bp | ACATTCTCCCATCCAAGTACTAACCAGGCCCGACCCTaGTTAGCTTCCGAGATCAGACGAGATCGGGCGCGT | + |
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Preference number: 6 (lower is better) Translates to: TFSHPSTNQARP*LASEIRRDRAR Trigger: ACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGAATGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611128.1 |
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| CDS GCA 72 bp | GTGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTaGTTAGCTTCCAAGATCAGACGAGATCAGGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: VVSHPSTNQARP*LASKIRRDQAH Trigger: ATGAGCCTGATCTCGTCTGATCTTGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647846.1 |
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| CDS GCA 72 bp | GTGGTCTCCCATCCAAGTACTAACCAGGTCCGACACTaGTTAGCTTGCGAGGTGAGACGAGGATCAGATGCT | + |
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Preference number: 6 (lower is better) Translates to: VVSHPSTNQVRH*LACEVRRGSDA Trigger: AGCATCTGATCCTCGTCTCACCTCGCAAGCTAAGCAGTGTCGGACCTGGTTAGTACTTGGATGGGAGACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648813.1 |
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| CDS TCA 72 bp | TCACGCGCATTCTCCCATCCAAGTACTAACCAGACCTaGCCCTGCTTAGCTTCTGAGATCAGAGGAGATGAT | + |
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Preference number: 6 (lower is better) Translates to: SRAFSHPSTNQT*PCLASEIRGDD Trigger: ATCATCTCCTCTGATCTCAGAAGCTAAGCAGGGTCAGGTCTGGTTAGTACTTGGATGGGAGAATGCGCGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000577302.1 ENST00000577378.1 ENST00000579807.1 ENST00000579922.1 ENST00000580910.1 ENST00000581845.1 |
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