RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZNF558 (Homo sapiens)

Ensembl gene IDs: ENSG00000167785

Ensembl transcript IDs: ENST00000301475.1, ENST00000593891.1, ENST00000595786.5, ENST00000596172.1, ENST00000597304.5, ENST00000599938.5, ENST00000601372.6

Found 311 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCTATTTCCTGCAGGAGGACCTGGGGCTGGATGCTATCGCTGACTaGCCTCTCTCAGCTCCTGGAATGCAGCCCTCTCCTCTCGTCTCC +
Preference number: 1 (lower is better)
Translates to: GYFLQEDLGLDAIAD*PLSAPGMQPSPLVS
Trigger: GGAGACGAGAGGAGAGGGCTGCATTCCAGGAGCTGAGAGAGGTCAGTCAGCGATAGCATCCAGCCCCAGGTCCTCCTGCAGGAAATAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 90 bp CCCTGGCTATTTCCTGCAGGAGGACCTGGGGCTGGATGCTATCGCTaGCTGACCTCTCTCAGCTCCTGGAATGCAGCCCTCTCCTCTCGT +
Preference number: 1 (lower is better)
Translates to: PWLFPAGGPGAGCYR*LTSLSSWNAALSSR
Trigger: ACGAGAGGAGAGGGCTGCATTCCAGGAGCTGAGAGAGGTCAGTCAGCGATAGCATCCAGCCCCAGGTCCTCCTGCAGGAAATAGCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR GCA 90 bp TGGGGCTGGATGCTATCGCTGACTGACCTCTCTCAGCTCCTGGAATaGAGCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTT +
Preference number: 1 (lower is better)
Translates to: WGWMLSLTDLSQLLE*SPLLSSPDSVAPSL
Trigger: AAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGCTGCATTCCAGGAGCTGAGAGAGGTCAGTCAGCGATAGCATCCAGCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR GCA 90 bp CTGTATTGGTCCTCTCTTGGATCACTAACCTTGGCGAGAACTTATTaGCAAATTGTCAAGGAGCTGGGCCTTGTAAAGAGGCCTACATGG +
Preference number: 1 (lower is better)
Translates to: LYWSSLGSLTLARTY*QIVKELGLVKRPTW
Trigger: CCATGTAGGCCTCTTTACAAGGCCCAGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAGGTTAGTGATCCAAGAGAGGACCAATACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR GCA 90 bp TGCCTGGCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTaGATGGACTGTCTGGGTTCAGATCTTGGCTCTACCATTTACCAG +
Preference number: 1 (lower is better)
Translates to: CLAHRTYSVNRVVVK*MDCLGSDLGSTIYQ
Trigger: CTGGTAAATGGTAGAGCCAAGATCTGAACCCAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGCCAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CCA 90 bp GCCCTGCTAAGCTGCTGGGTGCTTTACAACTTTTTGTGGTTTCCCTaGATCCTGTCCACAGGACTGAGTAGACCCTTTATGAAAACTCTA +
Preference number: 1 (lower is better)
Translates to: ALLSCWVLYNFLWFP*ILSTGLSRPFMKTL
Trigger: TAGAGTTTTCATAAAGGGTCTACTCAGTCCTGTGGACAGGATCCAGGGAAACCACAAAAAGTTGTAAAGCACCCAGCAGCTTAGCAGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 90 bp ATTGTCCTAGTCTGTGGGTGTCAACCTGAGTTCCTGCTGGGACCCTaGCTGATGTGCCAACTCACTGAAATAAGGAAAAGTCCTAACAAT +
Preference number: 1 (lower is better)
Translates to: IVLVCGCQPEFLLGP*LMCQLTEIRKSPNN
Trigger: ATTGTTAGGACTTTTCCTTATTTCAGTGAGTTGGCACATCAGTCAGGGTCCCAGCAGGAACTCAGGTTGACACCCACAGACTAGGACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR GCA 90 bp GTATTGGCCTCCTTGTTGTGGGCCTTTGCATGCCAACACTACTCTTaGAAGACAAATTCATATGACTCACTGTCCCAACTTGTTGAGATC +
Preference number: 1 (lower is better)
Translates to: VLASLLWAFACQHYS*KTNSYDSLSQLVEI
Trigger: GATCTCAACAAGTTGGGACAGTGAGTCATATGAATTTGTCTTGCAAGAGTAGTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 90 bp AGGATATCCCACACTCAAAACAGTGATTATACTTTTTGTTCCCAGTaGAAATTGTGGCCACTCAGTGAAGAGTTCAGGCTGAGGCATCCT +
Preference number: 1 (lower is better)
Translates to: RISHTQNSDYTFCSQ*KLWPLSEEFRLRHP
Trigger: AGGATGCCTCAGCCTGAACTCTTCACTGAGTGGCCACAATTTTCACTGGGAACAAAAAGTATAATCACTGTTTTGAGTGTGGGATATCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR TCA 90 bp TTTCTGTCATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTaGGGCCACTTTCCAAGAGACAGAATGGGTGAGGTGAATGGAAAA +
Preference number: 1 (lower is better)
Translates to: FLSLWSKRSSSNSRP*GHFPRDRMGEVNGK
Trigger: TTTTCCATTCACCTCACCCATTCTGTCTCTTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATGACAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 90 bp TGGACTGTCTGGGTTCAGATCTTGGCTCTACCATTTACCAGTCAGTaGATGCAGGCAAGTAACTTAAGTGTATCATACCAGTTTTCTCAT +
Preference number: 1 (lower is better)
Translates to: WTVWVQILALPFTSQ*MQASNLSVSYQFSH
Trigger: ATGAGAAAACTGGTATGATACACTTAAGTTACTTGCCTGCATTCACTGACTGGTAAATGGTAGAGCCAAGATCTGAACCCAGACAGTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CCA 90 bp AATTCCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTaGTATTCATACCTTCTGCAGTCTCTCACATTGTATCAGGATTGG +
Preference number: 1 (lower is better)
Translates to: NSMANFPDASELSVS*YSYLLQSLTLYQDW
Trigger: CCAATCCTGATACAATGTGAGAGACTGCAGAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR TCA 90 bp CATCCAGGGAGAAGTTCCATATTTTCCCTAACACAGAGGCATCACTaGAGGCTTTCTCTTCTTCTTTATATTTCAAGTTTCTCTGTAGTG +
Preference number: 1 (lower is better)
Translates to: HPGRSSIFSLTQRHH*RLSLLLYISSFSVV
Trigger: CACTACAGAGAAACTTGAAATATAAAGAAGAAGAGAAAGCCTTCAGTGATGCCTCTGTGTTAGGGAAAATATGGAACTTCTCCCTGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR GCA 90 bp ACATGGGTAAAACTTGACCAATTTATAGGTTTACCAGTTAGATTCTaGATCCTGCTGGAAGTTAACAGAACACCACCTCAAAAACAAACA +
Preference number: 1 (lower is better)
Translates to: TWVKLDQFIGLPVRF*ILLEVNRTPPQKQT
Trigger: TGTTTGTTTTTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTCAAGTTTTACCCATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCCTGTGGGTGTCAACCTaGGTTCCTGCTGGGACCCTG +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGLWVST*VPAGTL
Trigger: CAGGGTCCCAGCAGGAACTCAGGTTGACACCCACAG...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGCTCTGTTGCCAGGCTaGAGTGCACTGGCGCCATCT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGALLPG*SALAPS
Trigger: AGATGGCGCCAGTGCACTCCAGCCTGGCAACAGAGC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR GCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGAGGTGTTAGAGCTCTaGCCTGCTAAGCTGCTGGGT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGEVLEL*PAKLLG
Trigger: ACCCAGCAGCTTAGCAGGGCAGAGCTCTAACACCTC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGGGATGAAAGATCAATaGGTGCTTTCCTCCAGAAGT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGGMKDQ*VLSSRS
Trigger: ACTTCTGGAGGAAAGCACTCATTGATCTTTCATCCC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGATTCTGCATCCTGCTaGAAGTTAACAGAACACCAC +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGDSASC*KLTEHH
Trigger: GTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCATTAGAGTAGAAGGATaGTGTGCTGAGGGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGIRVEG*CAEGFS
Trigger: AGAAAAGCCCTCAGCACATCATCCTTCTACTCTAAT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCACTTTTTGTTCCCAGTaGAAATTGTGGCCACTCAGT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGTFCSQ*KLWPLS
Trigger: ACTGAGTGGCCACAATTTTCACTGGGAACAAAAAGT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCAGATGTTCCACACAGTaGCTTCGACTTACTTCTCAT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGRCSTQ*LRLTSH
Trigger: ATGAGAAGTAAGTCGAAGTCACTGTGTGGAACATCT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCCAGTACATAATCTTCTaGGCCCATGAAGGTGAGAAT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGQYIIF*AHEGEN
Trigger: ATTCTCACCTTCATGGGCCCAGAAGATTATGTACTG...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCCTTTACAACTTTTTGTaGTTTCCCTGGATCCTGTCC +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGLYNFL*FPWILS
Trigger: GGACAGGATCCAGGGAAACCACAAAAAGTTGTAAAG...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCACAATAGGAAATAAGTaGAAGCTTAGCAGTCCTCCT +
Preference number: 2 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGTIGNK*KLSSPP
Trigger: AGGAGGACTGCTAAGCTTTCACTTATTTCCTATTGT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR GCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGGTTGCCAGGCTGGAGTaGACTGGCGCCATCTTGGCT +
Preference number: 2 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLVARLE*TGAILA
Trigger: AGCCAAGATGGCGCCAGTGCACTCCAGCCTGGCAAC...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGAGGGTTTCACCACGTTaGCCAGGATGGTCTCAATCT +
Preference number: 2 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLRVSPR*PGWSQS
Trigger: AGATTGAGACCATCCTGGCCAACGTGGTGAAACCCT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGAAAATTACCTGGGCGTaGTGGCAGGTGCCTGTAATC +
Preference number: 2 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLKITWA*WQVPVI
Trigger: GATTACAGGCACCTGCCACCACGCCCAGGTAATTTT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 90 bp TCTGTATTGGTCCTCTCTTGGATCACTAACCTTGGCGAGAACTTATaGCCAAATTGTCAAGGAGCTGGGCCTTGTAAAGAGGCCTACATG +
Preference number: 2 (lower is better)
Translates to: SVLVLSWITNLGENL*PNCQGAGPCKEAYM
Trigger: CATGTAGGCCTCTTTACAAGGCCCAGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAGGTTAGTGATCCAAGAGAGGACCAATACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR CAA 90 bp AAGCCATTTTGGCCTCTGTATTGGTCCTCTCTTGGATCACTAACCTaGGCGAGAACTTATTGCCAAATTGTCAAGGAGCTGGGCCTTGTA +
Preference number: 2 (lower is better)
Translates to: KPFWPLYWSSLGSLT*ARTYCQIVKELGLV
Trigger: TACAAGGCCCAGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAGGTTAGTGATCCAAGAGAGGACCAATACAGAGGCCAAAATGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGACCAATCGGAGGCTCCTaGAGAGCCCAAAGCATTGTG +
Preference number: 2 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRPIGGS*RAQSIV
Trigger: CACAATGCTTTGGGCTCTCCAGGAGCCTCCGATTGG...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAAATCTGTTGACCTCATaGTCCACCCACCTCAGCCTC +
Preference number: 2 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRNLLTS*STHLSL
Trigger: GAGGCTGAGGTGGGTGGATCATGAGGTCAACAGATT...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGGGATGAAAGATCAATaGGTGCTTTCCTCCAGAAGT +
Preference number: 2 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIGMKDQ*VLSSRS
Trigger: ACTTCTGGAGGAAAGCACTCATTGATCTTTCATCCC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGTGCGTCTTAAGGGATaGCTGTCACTGAAGCCTTCT +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIVRLKG*LSLKPS
Trigger: AGAAGGCTTCAGTGACAGTCATCCCTTAAGACGCAC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGGTATTCCGCATTTCTaGGTGTTGTTCCATTGTGTG +
Preference number: 2 (lower is better)
Translates to: HCGQKEALQTLDLEATFQGIPHF*VLFHCV
Trigger: CACACAATGGAACAACACTCAGAAATGCGGAATACC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR GCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGTTAGATTCTGCATCCTaGTGGAAGTTAACAGAACAC +
Preference number: 2 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLLDSAS*WKLTEH
Trigger: GTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAA...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATTTTGGCCTCTGTATTaGTCCTCTCTTGGATCACTA +
Preference number: 2 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQFWPLY*SSLGSL
Trigger: TAGTGATCCAAGAGAGGACCAATACAGAGGCCAAAA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGACATTGTATCAGGATTaGTGTGTTGTGAGACCAACA +
Preference number: 2 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLTLYQD*CVVRPT
Trigger: TGTTGGTCTCACAACACACCAATCCTGATACAATGT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 90 bp ACTACTCTTGCAAGACAAATTCATATGACTCACTGTCCCAACTTGTaGAGATCTCCGCTCAAATGCTCCTTACCAAGAGGCTTTCTTTTC +
Preference number: 2 (lower is better)
Translates to: TTLARQIHMTHCPNL*RSPLKCSLPRGFLF
Trigger: GAAAAGAAAGCCTCTTGGTAAGGAGCATTTGAGCGGAGATCTCAACAAGTTGGGACAGTGAGTCATATGAATTTGTCTTGCAAGAGTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAAGGCATGAGAGATCCTaGAGTGTAACTACAGAGATA +
Preference number: 2 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIRHERS*SVTTEI
Trigger: TATCTCTGTAGTTACACTGCAGGATCTCTCATGCCT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR GCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATATACTCATAGGTTTTaGATCCAGGGAGAAGTTCCA +
Preference number: 2 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQYTHRF*IQGEVP
Trigger: TGGAACTTCTCCCTGGATGCAAAACCTATGAGTATA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 90 bp CATTCAAGGCTTTCCCATAGTCACTGCAGAATACCACACTATAGTTaGCTCAGTAATGTGAACACTTTTGCTGTAGGGTATTCCGCATTT +
Preference number: 2 (lower is better)
Translates to: HSRLSHSHCRIPHYS*LSNVNTFAVGYSAF
Trigger: AAATGCGGAATACCCTACAGCAAAAGTGTTCACATTACTGAGCAAACTATAGTGTGGTATTCTGCAGTGACTATGGGAAAGCCTTGAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGGTATTCCGCATTTCTaGGTGTTGTTCCATTGTGTG +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIGIPHF*VLFHCV
Trigger: CACACAATGGAACAACACTCAGAAATGCGGAATACC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR GCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAGGCATGAGAGATCCTaGAGTGTAACTACAGAGATA +
Preference number: 2 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFRHERS*SVTTEI
Trigger: TATCTCTGTAGTTACACTGCAGGATCTCTCATGCCT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCACAATAGGAAATAAGTaGAAGCTTAGCAGTCCTCCT +
Preference number: 2 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFTIGNK*KLSSPP
Trigger: AGGAGGACTGCTAAGCTTTCACTTATTTCCTATTGT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTTTCCCAGATGCTTCTaGGTTATCTGTTTCCTGGTA +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIFPRCF*VICFLV
Trigger: TACCAGGAAACAGATAACTCAGAAGCATCTGGGAAA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR GCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAAAAAGCTCATGTACTCTaGCAAAAATACCACTACATT +
Preference number: 2 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQKAHVL*QKYHYI
Trigger: AATGTAGTGGTATTTTTGGCAGAGTACATGAGCTTT...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTTTTGGCCTCTGTATTaGTCCTCTCTTGGATCACTA +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIFWPLY*SSLGSL
Trigger: TAGTGATCCAAGAGAGGACCAATACAGAGGCCAAAA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATCTTCATTAATTCCATaGCAAATTTCCCAGATGCTT +
Preference number: 2 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQSSLIP*QISQML
Trigger: AAGCATCTGGGAAATTTGCCATGGAATTAATGAAGA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTCAGTACATAATCTTCTaGGCCCATGAAGGTGAGAAT +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIQYIIF*AHEGEN
Trigger: ATTCTCACCTTCATGGGCCCAGAAGATTATGTACTG...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR CAA 90 bp TGCTTTGAAAGCAATGTGTCCTTCTTCTTTGGTTGTTTGGTAGATTaGCAGTTTGTCTCTCATTTTCTATGGTTTGTCCATGTTTCCTCC +
Preference number: 2 (lower is better)
Translates to: CFESNVSFFFGCLVD*QFVSHFLWFVHVSS
Trigger: GGAGGAAACATGGACAAACCATAGAAAATGAGAGACAAACTGCAAATCTACCAAACAACCAAAGAAGAAGGACACATTGCTTTCAAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTAGAAGGATGATGTGCTaGGGGCTTTTCTTCATTAAT +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIRRMMC*GLFFIN
Trigger: ATTAATGAAGAAAAGCCCTCAGCACATCATCCTTCT...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR GCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAGGTATTCATACCTTCTaGAGTCTCTCACATTGTATC +
Preference number: 2 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRGIHTF*SLSHCI
Trigger: GATACAATGTGAGAGACTGCAGAAGGTATGAATACC...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR GCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGACTTTCCCATAGTCACTaGAGAATACCACACTATAGT +
Preference number: 2 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRLSHSH*RIPHYS
Trigger: ACTATAGTGTGGTATTCTGCAGTGACTATGGGAAAG...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGTGAATAAGTCATCTTaGAAGTGGACTGTTCATCAG +
Preference number: 2 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIVNKSS*KWTVHQ
Trigger: CTGATGAACAGTCCACTTCCAAGATGACTTATTCAC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAGTGAATAAGTCATCTTaGAAGTGGACTGTTCATCAG +
Preference number: 2 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRVNKSS*KWTVHQ
Trigger: CTGATGAACAGTCCACTTCCAAGATGACTTATTCAC...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAATTGATGATGTTCAATaGGGCATTCTCTCCAGAATT +
Preference number: 2 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRIDDVQ*GILSRI
Trigger: AATTCTGGAGAGAATGCCCCATTGAACATCATCAAT...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CCA 72 bp CTGACCCTGGCTATTTCCTGCAGGAGGACCTGGGGCTaGATGCTATCGCTGACTGACCTCTCTCAGCTCCTG +
Preference number: 3 (lower is better)
Translates to: LTLAISCRRTWG*MLSLTDLSQLL
Trigger: CAGGAGCTGAGAGAGGTCAGTCAGCGATAGCATCCAGCCCCAGGTCCTCCTGCAGGAAATAGCCAGGGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp CCCAGCACTTTGGGAGACCGAGGTGGGCAAATCATGTaGGGTCAAAGGATCGAGACCATCCTGGCCAACATG +
Preference number: 3 (lower is better)
Translates to: PSTLGDRGGQIM*GQRIETILANM
Trigger: CATGTTGGCCAGGATGGTCTCGATCCTTTGACCTCACATGATTTGCCCACCTCGGTCTCCCAAAGTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CCA 72 bp CTCCCTCATCACCCCTTTGTTCCACTCCAGCTGTATTaGCCTCCTTGTTGTGGGCCTTTGCATGCCAACACT +
Preference number: 3 (lower is better)
Translates to: LPHHPFVPLQLY*PPCCGPLHANT
Trigger: AGTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATACAGCTGGAGTGGAACAAAGGGGTGATGAGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGAAAGCTCTCCAATATaGATGATGTTCAATGGGGCA +
Preference number: 3 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGESSPI*MMFNGA
Trigger: TGCCCCATTGAACATCATCAATATTGGAGAGCTTTC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp GGTTTCACCACGTTGGCCAGGATGGTCTCAATCTGTTaGCCTCATGATCCACCCACCTCAGCCTCTCAAAAG +
Preference number: 3 (lower is better)
Translates to: GFTTLARMVSIC*PHDPPTSASQK
Trigger: CTTTTGAGAGGCTGAGGTGGGTGGATCATGAGGTCAACAGATTGAGACCATCCTGGCCAACGTGGTGAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp ATTTTCCTGTCTCAATGGATGAAGGAGAGTGAGGTCTaGCCCTGGCTATTTCCTGCAGGAGGACCTGGGGCT +
Preference number: 3 (lower is better)
Translates to: IFLSQWMKESEV*PWLFPAGGPGA
Trigger: AGCCCCAGGTCCTCCTGCAGGAAATAGCCAGGGTCAGACCTCACTCTCCTTCATCCATTGAGACAGGAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCAGAAACCAACAGTATTaGGCATACCAAGATAGAGAG +
Preference number: 3 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGRNQQY*AYQDRE
Trigger: CTCTCTATCTTGGTATGCCAAATACTGTTGGTTTCT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp TGGGGATATTTTCCTGTCTCAATGGATGAAGGAGAGTaGGGTCTGACCCTGGCTATTTCCTGCAGGAGGACC +
Preference number: 3 (lower is better)
Translates to: WGYFPVSMDEGE*GLTLAISCRRT
Trigger: GGTCCTCCTGCAGGAAATAGCCAGGGTCAGACCTCACTCTCCTTCATCCATTGAGACAGGAAAATATCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CCA 72 bp GCCCTGCTAAGCTGCTGGGTGCTTTACAACTTTTTGTaGTTTCCCTGGATCCTGTCCACAGGACTGAGTAGA +
Preference number: 3 (lower is better)
Translates to: ALLSCWVLYNFL*FPWILSTGLSR
Trigger: TCTACTCAGTCCTGTGGACAGGATCCAGGGAAACCACAAAAAGTTGTAAAGCACCCAGCAGCTTAGCAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CCA 72 bp CTTTGTTCCACTCCAGCTGTATTGGCCTCCTTGTTGTaGGCCTTTGCATGCCAACACTACTCTTGCAAGACA +
Preference number: 3 (lower is better)
Translates to: LCSTPAVLASLL*AFACQHYSCKT
Trigger: TGTCTTGCAAGAGTAGTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATACAGCTGGAGTGGAACAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR GCA 72 bp AGGATCTACCATGTCTCTGACCACATCATCTTTTACTaGTCCCTCATCACCCCTTTGTTCCACTCCAGCTGT +
Preference number: 3 (lower is better)
Translates to: RIYHVSDHIIFY*SLITPLFHSSC
Trigger: ACAGCTGGAGTGGAACAAAGGGGTGATGAGGGAGCAGTAAAAGATGATGTGGTCAGAGACATGGTAGATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp CAGAAAACCCAACAAGATCAGGATCTACCATGTCTCTaGCCACATCATCTTTTACTGCTCCCTCATCACCCC +
Preference number: 3 (lower is better)
Translates to: QKTQQDQDLPCL*PHHLLLLPHHP
Trigger: GGGGTGATGAGGGAGCAGTAAAAGATGATGTGGTCAGAGACATGGTAGATCCTGATCTTGTTGGGTTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR GCA 72 bp CACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTaGATGGACTGTCTGGGTTCAGATCTTGGCTCTACC +
Preference number: 3 (lower is better)
Translates to: HRTYSVNRVVVK*MDCLGSDLGST
Trigger: GGTAGAGCCAAGATCTGAACCCAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR GCA 72 bp CCAGCTGTATTGGCCTCCTTGTTGTGGGCCTTTGCATaGCAACACTACTCTTGCAAGACAAATTCATATGAC +
Preference number: 3 (lower is better)
Translates to: PAVLASLLWAFA*QHYSCKTNSYD
Trigger: GTCATATGAATTTGTCTTGCAAGAGTAGTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATACAGCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp TTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTaGGGCCACTTTCCAAGAGACAGAATGGGTGAGGTG +
Preference number: 3 (lower is better)
Translates to: LWSKRSSSNSRP*GHFPRDRMGEV
Trigger: CACCTCACCCATTCTGTCTCTTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGAACTTATTGCCAAATaGTCAAGGAGCTGGGCCTTG +
Preference number: 3 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIELIAK*SRSWAL
Trigger: CAAGGCCCAGCTCCTTGACAATTTGGCAATAAGTTC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAACTTGGCGAGAACTTATaGCCAAATTGTCAAGGAGCT +
Preference number: 3 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQLGENL*PNCQGA
Trigger: AGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAG...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAATCGACTTACTTCTCATaGCCAGGGGAGTGCGAAAAA +
Preference number: 3 (lower is better)
Translates to: HCGQKEALQTLDLEATFQSTYFS*PGECEK
Trigger: TTTTTCGCACTCCCCTGGCAATGAGAAGTAAGTCGA...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp CCCCTGACAACAACCAACATCAACTTTCCAGGCATGTaGATAAGTCATCTTGGAAGTGGACTGTTCATCAGT +
Preference number: 3 (lower is better)
Translates to: PLTTTNINFPGM*ISHLGSGLFIS
Trigger: ACTGATGAACAGTCCACTTCCAAGATGACTTATTCACATGCCTGGAAAGTTGATGTTGGTTGTTGTCAGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR GCA 72 bp TCCTTGTTGTGGGCCTTTGCATGCCAACACTACTCTTaGAAGACAAATTCATATGACTCACTGTCCCAACTT +
Preference number: 3 (lower is better)
Translates to: SLLWAFACQHYS*KTNSYDSLSQL
Trigger: AAGTTGGGACAGTGAGTCATATGAATTTGTCTTGCAAGAGTAGTGTTGGCATGCAAAGGCCCACAACAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAATTTTGGCCTCTGTATaGGTCCTCTCTTGGATCACT +
Preference number: 3 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIILASV*VLSWIT
Trigger: AGTGATCCAAGAGAGGACCAATACAGAGGCCAAAAT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCCTGCAGTCTCTCACATaGTATCAGGATTGGTGTGTT +
Preference number: 3 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTLQSLT*YQDWCV
Trigger: AACACACCAATCCTGATACAATGTGAGAGACTGCAG...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR TCA 72 bp ATAATCTTCTGGGCCCATGAAGGTGAGAATTCGAGCTaGGAGCTTTACCATACAGATTGTCCTCAAAAGGTT +
Preference number: 3 (lower is better)
Translates to: IIFWAHEGENSS*ELYHTDCPQKV
Trigger: AACCTTTTGAGGACAATCTGTATGGTAAAGCTCTCAGCTCGAATTCTCACCTTCATGGGCCCAGAAGATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR TCA 72 bp TGGGTTCAGATCTTGGCTCTACCATTTACCAGTCAGTaGATGCAGGCAAGTAACTTAAGTGTATCATACCAG +
Preference number: 3 (lower is better)
Translates to: WVQILALPFTSQ*MQASNLSVSYQ
Trigger: CTGGTATGATACACTTAAGTTACTTGCCTGCATTCACTGACTGGTAAATGGTAGAGCCAAGATCTGAACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGCTTTGGCTGACATCTaGATTGTAAGTAAAGGCATG +
Preference number: 3 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTALADI*IVSKGM
Trigger: CATGCCTTTACTTACAATCAAGATGTCAGCCAAAGC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCCTTGGCGAGAACTTATaGCCAAATTGTCAAGGAGCT +
Preference number: 3 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFLGENL*PNCQGA
Trigger: AGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAG...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGTCATAAAAGCCATTTaGGCCTCTGTATTGGTCCTC +
Preference number: 3 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFVIKAI*ASVLVL
Trigger: GAGGACCAATACAGAGGCCAAAATGGCTTTTATGAC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCCACATTGTATCAGGATaGGTGTGTTGTGAGACCAAC +
Preference number: 3 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFHIVSG*VCCETN
Trigger: GTTGGTCTCACAACACACCAATCCTGATACAATGTG...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTCTGAGTGTTGTTCCATaGTGTGATTTCCAGTGCGTC +
Preference number: 3 (lower is better)
Translates to: NRKLSNIDDVQWGILSRILSVVP*CDFQCV
Trigger: GACGCACTGGAAATCACACAATGGAACAACACTCAG...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR TCA 72 bp CACACTCAAAACAGTGATTATACTTTTTGTTCCCAGTaGAAATTGTGGCCACTCAGTGAAGAGTTCAGGCTG +
Preference number: 3 (lower is better)
Translates to: HTQNSDYTFCSQ*KLWPLSEEFRL
Trigger: CAGCCTGAACTCTTCACTGAGTGGCCACAATTTTCACTGGGAACAAAAAGTATAATCACTGTTTTGAGTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTGAAGCCACAAAATTaGCGGGGATCATTTGTTATG +
Preference number: 3 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTLKPQN*RGSFVM
Trigger: CATAACAAATGATCCCCGCAAATTTTGTGGCTTCAA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGCTTTGGCTGACATCTaGATTGTAAGTAAAGGCATG +
Preference number: 3 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFALADI*IVSKGM
Trigger: CATGCCTTTACTTACAATCAAGATGTCAGCCAAAGC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR-3UTR CAA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAATTTTGGCCTCTGTATaGGTCCTCTCTTGGATCACT +
Preference number: 3 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRILASV*VLSWIT
Trigger: AGTGATCCAAGAGAGGACCAATACAGAGGCCAAAAT...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAGTCATAAAAGCCATTTaGGCCTCTGTATTGGTCCTC +
Preference number: 3 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRVIKAI*ASVLVL
Trigger: GAGGACCAATACAGAGGCCAAAATGGCTTTTATGAC...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTTGAAGCCACAAAATTaGCGGGGATCATTTGTTATG +
Preference number: 3 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFLKPQN*RGSFVM
Trigger: CATAACAAATGATCCCCGCAAATTTTGTGGCTTCAA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR CCA 72 bp GCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTaGTATTCATACCTTCTGCAGTCTCTCACATTGTAT +
Preference number: 3 (lower is better)
Translates to: ANFPDASELSVS*YSYLLQSLTLY
Trigger: ATACAATGTGAGAGACTGCAGAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR TCA 72 bp CTTGATTTTTCTATAATCTGTTCCTCCTCCATTAGGTaGAGTATTTCAATGGCAAAACTTTGCCTGGCACAC +
Preference number: 3 (lower is better)
Translates to: LDFSIICSSSIR*SISMAKLCLAH
Trigger: GTGTGCCAGGCAAAGTTTTGCCATTGAAATACTTCACCTAATGGAGGAGGAACAGATTATAGAAAAATCAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR TCA 72 bp TTATGTATGTCTCTATGGAATCATTTTCCTGAAGCCTaGAGAAATCTCTTCAGTGTTTCTGAAAATACGGTT +
Preference number: 3 (lower is better)
Translates to: LCMSLWNHFPEA*RNLFSVSENTV
Trigger: AACCGTATTTTCAGAAACACTGAAGAGATTTCTTCAGGCTTCAGGAAAATGATTCCATAGAGACATACATAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGTGGAGAGGCCTATGTaGAGAGGAACTGAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGVERPM*RGTEAS
Trigger: GGAGGCCTCAGTTCCTCTCCACATAGGCCTCTCCAC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGCTCAAGTGGCCCTGTaGAGAGGCCTATGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGAQVAL*RGLCGE
Trigger: CTCTCCACATAGGCCTCTCCACAGGGCCACTTGAGC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGATGCTATCGCTGACTaGCCTCTCTCAGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGDAIAD*PLSAPG
Trigger: TCCAGGAGCTGAGAGAGGTCAGTCAGCGATAGCATC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCAACAGGTGGACCTTGTaGCAGGCTTCAACACGAATC +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGNRWTL*QASTRI
Trigger: GATTCGTGTTGAAGCCTGCCACAAGGTCCACCTGTT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCTCAAACTCTAGACCTTaGGGCCACTTTCCAAGAGAC +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGSNSRP*GHFPRD
Trigger: GTCTCTTGGAAAGTGGCCTCAAGGTCTAGAGTTTGA...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGCGCTATTTCCTATCTaGCAGGTCAACAGAGACACA +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGALFPI*QVNRDT
Trigger: TGTGTCTCTGTTGACCTGCCAGATAGGAAATAGCGC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp GCTCCCTCATCACCCCTTTGTTCCACTCCAGCTGTATaGGCCTCCTTGTTGTGGGCCTTTGCATGCCAACAC +
Preference number: 4 (lower is better)
Translates to: APSSPLCSTPAV*ASLLWAFACQH
Trigger: GTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATACAGCTGGAGTGGAACAAAGGGGTGATGAGGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCATGCAGTCTAAGGGATaGGGGATCACTAAATGCTTT +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGMQSKG*GITKCF
Trigger: AAAGCATTTAGTGATCCCTCATCCCTTAGACTGCAT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCAGGTTACAGAACTTTTaGTTGACAATTTCCCCCTCC +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGRLQNF*LTISPS
Trigger: GGAGGGGGAAATTGTCAATCAAAAGTTCTGTAACCT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp TCACCCCTTTGTTCCACTCCAGCTGTATTGGCCTCCTaGTTGTGGGCCTTTGCATGCCAACACTACTCTTGC +
Preference number: 4 (lower is better)
Translates to: SPLCSTPAVLAS*LWAFACQHYSC
Trigger: GCAAGAGTAGTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAATACAGCTGGAGTGGAACAAAGGGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCTTTAAACGAATAAACTaGAGAGAACGGACACTGGGA +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGFKRIN*RERTLG
Trigger: TCCCAGTGTCCGTTCTCTTCAGTTTATTCGTTTAAA...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATCCCTCTCGGGCTGCTaGGGATGGGCCCTCCTCAAC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTISLSGC*GWALLN
Trigger: GTTGAGGAGGGCCCATCCCCAGCAGCCCGAGAGGGA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGCAGCCAAGCTGCTCCTaGATTCCAGGGAGACGTGGA +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLQPSCS*IPGRRG
Trigger: TCCACGTCTCCCTGGAATTCAGGAGCAGCTTGGCTG...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTCCTCCCTCTCGGGCTaGTGGGGATGGGCCCTCCTC +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRISSLSG*WGWALL
Trigger: GAGGAGGGCCCATCCCCAGCAGCCCGAGAGGGAGGA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS-3UTR GCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGACAGCGGGGGTGGGTaGAGGGGTGACTTTCAGGAC +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTDSGGG*RGDFQD
Trigger: GTCCTGAAAGTCACCCCTGCACCCACCCCCGCTGTC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTCGGGCTGCTGGGGATaGGCCCTCCTCAACCCATCC +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFSGCWG*ALLNPS
Trigger: GGATGGGTTGAGGAGGGCCCATCCCCAGCAGCCCGA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATGCTCCAAGTCTCCGTaGCCTCCTCCCTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTICSKSP*PPPSRA
Trigger: AGCCCGAGAGGGAGGAGGCCACGGAGACTTGGAGCA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS-3UTR CCA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCATTGATGATGTTCAATaGGGCATTCTCTCCAGAATT +
Preference number: 4 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGIDDVQ*GILSRI
Trigger: AATTCTGGAGAGAATGCCCCATTGAACATCATCAAT...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp TCTGCCCTGCTAAGCTGCTGGGTGCTTTACAACTTTTaGTGGTTTCCCTGGATCCTGTCCACAGGACTGAGT +
Preference number: 4 (lower is better)
Translates to: SALLSCWVLYNF*WFPWILSTGLS
Trigger: ACTCAGTCCTGTGGACAGGATCCAGGGAAACCACAAAAAGTTGTAAAGCACCCAGCAGCTTAGCAGGGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGGGTGGGTGCAGGGGTaGCTTTCAGGACCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQGWVQG*LSGPGL
Trigger: AAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAACCCTGGCTATTTCCTaGAGGAGGACCTGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTITLAIS*RRTWGW
Trigger: CCAGCCCCAGGTCCTCCTGCAGGAAATAGCCAGGGT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGATTGTGGCCACTCAGTaGAGAGTTCAGGCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLIVATQ*RVQAEA
Trigger: TGCCTCAGCCTGAACTCTTCACTGAGTGGCCACAAT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCAGGAGGAGGTTGCAGTaGGCCGAGATCATGCCACTG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTRRRLQ*AEIMPL
Trigger: CAGTGGCATGATCTCGGCTCACTGCAACCTCCTCCT...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGGAGTCCAGAGCAGATaGAGCCAATCGGAGGCTCCT +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQGVQSR*SQSEAP
Trigger: AGGAGCCTCCGATTGGCTGCATCTGCTCTGGACTCC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACCGAGATCATGCCACTaGACTCCAGCATGGCGACAG +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIPRSCH*TPAWRQ
Trigger: CTGTCGCCATGCTGGAGTGCAGTGGCATGATCTCGG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACCAGGAGGAGGAGGTTaGAGTGAGCCGAGATCATGC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIPGGGG*SEPRSC
Trigger: GCATGATCTCGGCTCACTGCAACCTCCTCCTCCTGG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGGGAAGACGCTCAAGTaGCCCTGTGGAGAGGCCTAT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIGKTLK*PCGEAY
Trigger: ATAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGTGACCAGCAGAATATaGCTGAGGAGACAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTVTSRI*LRRQRG
Trigger: CCCCCGCTGTCTCCTCAGCCATATTCTGCTGGTCAC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAACCAATCGGAGGCTCCTaGAGAGCCCAAAGCATTGTG +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQPIGGS*RAQSIV
Trigger: CACAATGCTTTGGGCTCTCCAGGAGCCTCCGATTGG...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGCCACGTTGGCCAGGATaGTCTCAATCTGTTGACCTC +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLPRWPG*SQSVDL
Trigger: GAGGTCAACAGATTGAGACCATCCTGGCCAACGTGG...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGCTCTGTTGCCAGGCTaGAGTGCACTGGCGCCATCT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFALLPG*SALAPS
Trigger: AGATGGCGCCAGTGCACTCCAGCCTGGCAACAGAGC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTCTGTGGGTGTCAACCTaGGTTCCTGCTGGGACCCTG +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRILWVST*VPAGTL
Trigger: CAGGGTCCCAGCAGGAACTCAGGTTGACACCCACAG...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGGCAGGAGAATCACTTaGACCCAGGAGGAGGAGGTT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIGRRIT*TQEEEV
Trigger: AACCTCCTCCTCCTGGGTTCAAGTGATTCTCCTGCC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAACAGCTGACAGCCTTCTaGAAGTTTCCAGCCAGAGCC +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQQLTAF*KFPARA
Trigger: GGCTCTGGCTGGAAACTTGCAGAAGGCTGTCAGCTG...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAACTAGAGGACACCAGTTaGCATGGTGGGAAGACGCTC +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQLEDTS*HGGKTL
Trigger: GAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAG...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGTTGCCAGGCTGGAGTaGACTGGCGCCATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIVARLE*TGAILA
Trigger: AGCCAAGATGGCGCCAGTGCACTCCAGCCTGGCAAC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTCTCAGCTCCTGGAATaGAGCCCTCTCCTCTCGTCT +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTSQLLE*SPLLSS
Trigger: AGACGAGAGGAGAGGGCTGCATTCCAGGAGCTGAGA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAAAATTCCAGGGAGACGTaGATTGCAGCAACTCTGGCG +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQNSRET*IAATLA
Trigger: CGCCAGAGTTGCTGCAATCCACGTCTCCCTGGAATT...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACAGCTGCTTCCGCCTTaGTCTCCTGGATGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIQLLPP*SPGCCS
Trigger: AGAGCAACATCCAGGAGACCAAGGCGGAAGCAGCTG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAAATCTGTTGACCTCATaGTCCACCCACCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTINLLTS*STHLSL
Trigger: GAGGCTGAGGTGGGTGGATCATGAGGTCAACAGATT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTTCCTGCTGGGACCCTaGCTGATGTGCCAACTCACT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFFLLGP*LMCQLT
Trigger: AGTGAGTTGGCACATCAGTCAGGGTCCCAGCAGGAA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGGTGGGCAAATCATGTaGGGTCAAAGGATCGAGACC +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQGGQIM*GQRIET
Trigger: GGTCTCGATCCTTTGACCTCACATGATTTGCCCACC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTATCCCGCAGCGCTCTaGAAGAAACGGGAATGCTCC +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFYPAAL*KKRECS
Trigger: GGAGCATTCCCGTTTCTTCCAGAGCGCTGCGGGATA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCACCCACAACAACAGGTaGACCTTGTGGCAGGCTTCA +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTTHNNR*TLWQAS
Trigger: TGAAGCCTGCCACAAGGTCCACCTGTTGTTGTGGGT...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCAGAATTGCTGGAACCTaGGAGGCCAAGGTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTRIAGT*EAKVAV
Trigger: CACTGCAACCTTGGCCTCCCAGGTTCCAGCAATTCT...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTGGCCTCCTTGTTGTaGGCCTTTGCATGCCAACAC +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTLASLL*AFACQH
Trigger: GTGTTGGCATGCAAAGGCCCACAACAAGGAGGCCAA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCACCTCTCTCAGCTCCTaGAATGCAGCCCTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFTSLSS*NAALSS
Trigger: AGAGGAGAGGGCTGCATTCCAGGAGCTGAGAGAGGT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp TGGCCTCTGTATTGGTCCTCTCTTGGATCACTAACCTaGGCGAGAACTTATTGCCAAATTGTCAAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: WPLYWSSLGSLT*ARTYCQIVKEL
Trigger: CAGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAGGTTAGTGATCCAAGAGAGGACCAATACAGAGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATCCTCTTGTGGCTTTTaGGGTTACAACTGGTGCGGA +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTISSCGF*GYNWCG
Trigger: TCCGCACCAGTTGTAACCTCAAAAGCCACAAGAGGA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGGGTGAGAATTCGAGCTaGGAGCTTTACCATACAGAT +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLGENSS*ELYHTD
Trigger: ATCTGTATGGTAAAGCTCTCAGCTCGAATTCTCACC...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGTGCGTCTTAAGGGATaGCTGTCACTGAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIVRLKG*LSLKPS
Trigger: AGAAGGCTTCAGTGACAGTCATCCCTTAAGACGCAC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAAGTGAAGAGTTCAGGCTaGGGCATCCTAACACTGATT +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQVKSSG*GILTLI
Trigger: AATCAGTGTTAGGATGCCTCAGCCTGAACTCTTCAC...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTGCTGGGACCCTGACTaGTGTGCCAACTCACTGAAA +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFCWDPD*CANSLK
Trigger: TTTCAGTGAGTTGGCACATCAGTCAGGGTCCCAGCA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTGGTCTCCTGGATGTTaGTCTAGAGGACACCAGTTG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTWSPGC*SRGHQL
Trigger: CAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTCTGAGGCAGGAGAATTaGTGGAACCTGGGAGGCCAA +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRILRQEN*WNLGGQ
Trigger: TTGGCCTCCCAGGTTCCAGCAATTCTCCTGCCTCAG...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGAGGTGTTAGAGCTCTaGCCTGCTAAGCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIEVLEL*PAKLLG
Trigger: ACCCAGCAGCTTAGCAGGGCAGAGCTCTAACACCTC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGGATTGCAGCAACTCTaGCGCTATTTCCTATCTGGC +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQGLQQL*RYFLSG
Trigger: GCCAGATAGGAAATAGCGCCAGAGTTGCTGCAATCC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAAAAATTACCTGGGCGTaGTGGCAGGTGCCTGTAATC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIKITWA*WQVPVI
Trigger: GATTACAGGCACCTGCCACCACGCCCAGGTAATTTT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATGGCAAAACTTTGCCTaGCACACAGAACATACTCCG +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQWQNFA*HTEHTP
Trigger: CGGAGTATGTTCTGTGTGCCAGGCAAAGTTTTGCCA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTTGGGAGACCGAGGTaGGCAAATCATGTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTFGRPR*ANHVRS
Trigger: TGACCTCACATGATTTGCCCACCTCGGTCTCCCAAA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp GCAAGACAAATTCATATGACTCACTGTCCCAACTTGTaGAGATCTCCGCTCAAATGCTCCTTACCAAGAGGC +
Preference number: 4 (lower is better)
Translates to: ARQIHMTHCPNL*RSPLKCSLPRG
Trigger: GCCTCTTGGTAAGGAGCATTTGAGCGGAGATCTCAACAAGTTGGGACAGTGAGTCATATGAATTTGTCTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGGTAAGATCTGCTACTaGAGGACTTCCCACATTGAC +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTGKICY*RTSHID
Trigger: GTCAATGTGGGAAGTCCTTCAGTAGCAGATCTTACC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGGTAAGATCTGCTACTaGAGGACTTCCCACATTGAC +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQGKICY*RTSHID
Trigger: GTCAATGTGGGAAGTCCTTCAGTAGCAGATCTTACC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTCCTCTTGTGGCTTTTaGGGTTACAACTGGTGCGGA +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFSSCGF*GYNWCG
Trigger: TCCGCACCAGTTGTAACCTCAAAAGCCACAAGAGGA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGTGTTGTTCCATTGTGTaGTTTCCAGTGCGTCTTAAG +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLCCSIV*FPVRLK
Trigger: CTTAAGACGCACTGGAAATCACACAATGGAACAACA...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAAACACAGAGGCATCACTaGAGGCTTTCTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQTQRHH*RLSLLL
Trigger: AAGAAGAAGAGAAAGCCTTCAGTGATGCCTCTGTGT...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTATTGTGGCCACTCAGTaGAGAGTTCAGGCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIIVATQ*RVQAEA
Trigger: TGCCTCAGCCTGAACTCTTCACTGAGTGGCCACAAT...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGAGCCCAAAGCATTGTaGTTTTTGGCTGCACTTTGG +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQEPKAL*FLAALW
Trigger: CCAAAGTGCAGCCAAAAATCACAATGCTTTGGGCTC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACCATCCTTCTTCAAATaGAAGTTCCGGCTTCCACAC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIPSFFK*KFRLPH
Trigger: GTGTGGAAGCCGGAACTTGCATTTGAAGAAGGATGG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS-3UTR GCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGACAGGGAGACGTGGATTaGAGCAACTCTGGCGCTATT +
Preference number: 4 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRQGDVD*SNSGAI
Trigger: AATAGCGCCAGAGTTGCTGCAATCCACGTCTCCCTG...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAATTGTGGGCCTTTGCATaGCAACACTACTCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQLWAFA*QHYSCK
Trigger: CTTGCAAGAGTAGTGTTGGCATGCAAAGGCCCACAA...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATCAACAGAGACACAGTaGCCCACACTCTTCATTCTC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTISTETQ*PTLFIL
Trigger: GAGAATGAAGAGTGTGGGCCACTGTGTCTCTGTTGA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAGGGTTTCACCACGTTaGCCAGGATGGTCTCAATCT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFRVSPR*PGWSQS
Trigger: AGATTGAGACCATCCTGGCCAACGTGGTGAAACCCT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGGGATGAAAGATCAATaGGTGCTTTCCTCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTGMKDQ*VLSSRS
Trigger: ACTTCTGGAGGAAAGCACTCATTGATCTTTCATCCC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGAGTTTCTCTGTAGTGTaGATGCTCACAAGTTTCCTA +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLSFSVV*MLTSFL
Trigger: TAGGAAACTTGTGAGCATTCACACTACAGAGAAACT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAACACAGAGGCATCACTaGAGGCTTTCTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTITQRHH*RLSLLL
Trigger: AAGAAGAAGAGAAAGCCTTCAGTGATGCCTCTGTGT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGTGAAGAGTTCAGGCTaGGGCATCCTAACACTGATT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFVKSSG*GILTLI
Trigger: AATCAGTGTTAGGATGCCTCAGCCTGAACTCTTCAC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGCAAGACAAATTCATATaGCTCACTGTCCCAACTTGT +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLQDKFI*LTVPTC
Trigger: ACAAGTTGGGACAGTGAGTCATATGAATTTGTCTTG...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAGTGCATGGACTGTCTaGGTTCAGATCTTGGCTCTA +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFSAWTV*VQILAL
Trigger: TAGAGCCAAGATCTGAACCCAGACAGTCCATGCACT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp GTTTCCTGGTATTCATACCTTCTGCAGTCTCTCACATaGTATCAGGATTGGTGTGTTGTGAGACCAACACAA +
Preference number: 4 (lower is better)
Translates to: VSWYSYLLQSLT*YQDWCVVRPTQ
Trigger: TTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGAAGGTATGAATACCAGGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR CAA 72 bp CTTGCAAGACAAATTCATATGACTCACTGTCCCAACTaGTTGAGATCTCCGCTCAAATGCTCCTTACCAAGA +
Preference number: 4 (lower is better)
Translates to: LARQIHMTHCPN*LRSPLKCSLPR
Trigger: TCTTGGTAAGGAGCATTTGAGCGGAGATCTCAACAAGTTGGGACAGTGAGTCATATGAATTTGTCTTGCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAATGCAGTCTAAGGGATaGGGGATCACTAAATGCTTT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIMQSKG*GITKCF
Trigger: AAAGCATTTAGTGATCCCTCATCCCTTAGACTGCAT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGGGATGAAAGATCAATaGGTGCTTTCCTCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFGMKDQ*VLSSRS
Trigger: ACTTCTGGAGGAAAGCACTCATTGATCTTTCATCCC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATTTCCCAGATGCTTCTaGGTTATCTGTTTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIFPRCF*VICFLV
Trigger: TACCAGGAAACAGATAACTCAGAAGCATCTGGGAAA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAATTAGAGTAGAAGGATaGTGTGCTGAGGGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIIRVEG*CAEGFS
Trigger: AGAAAAGCCCTCAGCACATCATCCTTCTACTCTAAT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTGTTGTTCCATTGTGTaGTTTCCAGTGCGTCTTAAG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTCCSIV*FPVRLK
Trigger: CTTAAGACGCACTGGAAATCACACAATGGAACAACA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGGTATTCCGCATTTCTaGGTGTTGTTCCATTGTGTG +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFGIPHF*VLFHCV
Trigger: CACACAATGGAACAACACTCAGAAATGCGGAATACC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGAGTCCAATCTACAGATaGGACACTGATAAAGGATAT +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLSPIYR*DTDKGY
Trigger: ATATCCTTTATCAGTGTCTCATCTGTAGATTGGACT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATTACTGATGCTGCTTTaGAAGCAATGTGTCCTTCTT +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQLLMLL*KQCVLL
Trigger: AAGAAGGACACATTGCTTTCAAAGCAGCATCAGTAA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACCAAATCTGGACAGGTaGTTGGTAGAATTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIPNLDR*LVEFLF
Trigger: AAAGAGGAATTCTACCAAGCACCTGTCCAGATTTGG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAAGGCATGAGAGATCCTaGAGTGTAACTACAGAGATA +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQRHERS*SVTTEI
Trigger: TATCTCTGTAGTTACACTGCAGGATCTCTCATGCCT...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAAGGTATTCATACCTTCTaGAGTCTCTCACATTGTATC +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQGIHTF*SLSHCI
Trigger: GATACAATGTGAGAGACTGCAGAAGGTATGAATACC...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATTGTGTGATTTCCAGTaGGTCTTAAGGGATGACTGT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTILCDFQ*VLRDDC
Trigger: ACAGTCATCCCTTAAGACGCACTGGAAATCACACAA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTCAATGGCAAAACTTTaGCTGGCACACAGAACATAC +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTSMAKL*LAHRTY
Trigger: GTATGTTCTGTGTGCCAGGCAAAGTTTTGCCATTGA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACAGTACATAATCTTCTaGGCCCATGAAGGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIQYIIF*AHEGEN
Trigger: ATTCTCACCTTCATGGGCCCAGAAGATTATGTACTG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCCAGTACATAATCTTCTaGGCCCATGAAGGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTQYIIF*AHEGEN
Trigger: ATTCTCACCTTCATGGGCCCAGAAGATTATGTACTG...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGATTCTGCATCCTGCTaGAAGTTAACAGAACACCAC +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFDSASC*KLTEHH
Trigger: GTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGGTGAAGTATTTCAATaGCAAAACTTTGCCTGGCAC +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIGEVFQ*QNFAWH
Trigger: GTGCCAGGCAAAGTTTTGCCATTGAAATACTTCACC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAAGTCTCTCATTTTCTATaGTTTGTCCATGTTTCCTCC +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQVSHFL*FVHVSS
Trigger: GGAGGAAACATGGACAAACCATAGAAAATGAGAGAC...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGAATATTCCCTCCCATTaGAAAACATTGTTGCCTTCA +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLNIPSH*KTLLPS
Trigger: TGAAGGCAACAATGTTTTCCAATGGGAGGGAATATT...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAAGTTTCACTCCACGATaGCTTCTTTCCGTTTTTACA +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTISFTPR*LLSVFT
Trigger: TGTAAAAACGGAAAGAAGTCATCGTGGAGTGAAACT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTCTGGTGCGGAAAACGTaGAAACACTGGTTACATTCA +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRILVRKT*KHWLHS
Trigger: TGAATGTAACCAGTGTTTTCACGTTTTCCGCACCAG...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAAGAAGGATGATGTGCTaGGGGCTTTTCTTCATTAAT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIRRMMC*GLFFIN
Trigger: ATTAATGAAGAAAAGCCCTCAGCACATCATCCTTCT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAAGAAGGATGATGTGCTaGGGGCTTTTCTTCATTAAT +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQRRMMC*GLFFIN
Trigger: ATTAATGAAGAAAAGCCCTCAGCACATCATCCTTCT...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCATTAGAGTAGAAGGATaGTGTGCTGAGGGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFIRVEG*CAEGFS
Trigger: AGAAAAGCCCTCAGCACATCATCCTTCTACTCTAAT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGGTGAGAATTCGAGCTaGGAGCTTTACCATACAGAT +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIGENSS*ELYHTD
Trigger: ATCTGTATGGTAAAGCTCTCAGCTCGAATTCTCACC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCAGTTTCTCTGTAGTGTaGATGCTCACAAGTTTCCTA +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTSFSVV*MLTSFL
Trigger: TAGGAAACTTGTGAGCATTCACACTACAGAGAAACT...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCACTTTTTGTTCCCAGTaGAAATTGTGGCCACTCAGT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFTFCSQ*KLWPLS
Trigger: ACTGAGTGGCCACAATTTTCACTGGGAACAAAAAGT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAGAATCTGAGCTTGAATaGTGCTTTTCTCATCGAGCC +
Preference number: 4 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRESELE*CFSHRA
Trigger: GGCTCGATGAGAAAAGCATCATTCAAGCTCAGATTC...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTATGAAAACTCTACTTaGATTGTCCTAGTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTYENST*IVLVCG
Trigger: CCCACAGACTAGGACAATTCAAGTAGAGTTTTCATA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTACAGAACTTTTGATTaGCAATTTCCCCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFYRTFD*QFPPPP
Trigger: TGGAGGAGGGGGAAATTGTCAATCAAAAGTTCTGTA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATCTCTTCAGTGTTTCTaGAAATACGGTTATGCTGTT +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQSLQCF*KYGYAV
Trigger: AACAGCATAACCGTATTTTCAGAAACACTGAAGAGA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCCCAAATCTGGACAGGTaGTTGGTAGAATTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFPNLDR*LVEFLF
Trigger: AAAGAGGAATTCTACCAAGCACCTGTCCAGATTTGG...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATCCTCCAGAAGTTCCTaGAGTAATTCATATCCATCT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTISSRSS*SNSYPS
Trigger: AGATGGATATGAATTACTGCAGGAACTTCTGGAGGA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGGTATTCATACCTTCTaGAGTCTCTCACATTGTATC +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTGIHTF*SLSHCI
Trigger: GATACAATGTGAGAGACTGCAGAAGGTATGAATACC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACTTTCCCATAGTCACTaGAGAATACCACACTATAGT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTILSHSH*RIPHYS
Trigger: ACTATAGTGTGGTATTCTGCAGTGACTATGGGAAAG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTATACTCATAGGTTTTaGATCCAGGGAGAAGTTCCA +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTYTHRF*IQGEVP
Trigger: TGGAACTTCTCCCTGGATGCAAAACCTATGAGTATA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATGCCAACACTACTCTTaGAAGACAAATTCATATGAC +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQCQHYS*KTNSYD
Trigger: GTCATATGAATTTGTCTTGCAAGAGTAGTGTTGGCA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGTGAATAAGTCATCTTaGAAGTGGACTGTTCATCAG +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIVNKSS*KWTVHQ
Trigger: CTGATGAACAGTCCACTTCCAAGATGACTTATTCAC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTTTTGGCCTCTGTATTaGTCCTCTCTTGGATCACTA +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFFWPLY*SSLGSL
Trigger: TAGTGATCCAAGAGAGGACCAATACAGAGGCCAAAA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCACATTGTATCAGGATTaGTGTGTTGTGAGACCAACA +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTTLYQD*CVVRPT
Trigger: TGTTGGTCTCACAACACACCAATCCTGATACAATGT...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGAGTTATCTGTTTCCTaGTATTCATACCTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTELSVS*YSYLLQ
Trigger: CTGCAGAAGGTATGAATACCAGGAAACAGATAACTC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGTCTTCATTAATTCCATaGCAAATTTCCCAGATGCTT +
Preference number: 4 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLSSLIP*QISQML
Trigger: AAGCATCTGGGAAATTTGCCATGGAATTAATGAAGA...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAATTTTTGGCTGCACTTTaGTTTCTGTCATTGTGGTCA +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQFLAAL*FLSLWS
Trigger: TGACCACAATGACAGAAACCAAAGTGCAGCCAAAAA...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp GGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACACCACCTCAATGTGTCCTTCTTCTTTaGTTGTTTGGTAGATTTGCA +
Preference number: 4 (lower is better)
Translates to: GLPVRFCILLEVNRTPPQCVLLL*LFGRFA
Trigger: TGCAAATCTACCAAACAACCAAAGAAGAAGGACACA...TTGAGGTGGTGTTCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCGTGTTTCTTCACAGCTaGGAGATTATTAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTVFLHS*EIIKGF
Trigger: AAAGCCTTTAATAATCTCTCAGCTGTGAAGAAACAC...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGTGTTTCTTCACAGCTaGGAGATTATTAAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQVFLHS*EIIKGF
Trigger: AAAGCCTTTAATAATCTCTCAGCTGTGAAGAAACAC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAAGATGTTCCACACAGTaGCTTCGACTTACTTCTCAT +
Preference number: 4 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRRCSTQ*LRLTSH
Trigger: ATGAGAAGTAAGTCGAAGTCACTGTGTGGAACATCT...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCCATTTTCCTGAAGCCTaGAGAAATCTCTTCAGTGTT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFHFPEA*RNLFSV
Trigger: AACACTGAAGAGATTTCTTCAGGCTTCAGGAAAATG...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTTGTGTGATTTCCAGTaGGTCTTAAGGGATGACTGT +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRILCDFQ*VLRDDC
Trigger: ACAGTCATCCCTTAAGACGCACTGGAAATCACACAA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTTACCAGTTAGATTCTaGATCCTGCTGGAAGTTAAC +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFLPVRF*ILLEVN
Trigger: GTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAGAAACCAACAGTATTTaGCATACCAAGATAGAGAGA +
Preference number: 4 (lower is better)
Translates to: HCGQKEALQTLDLEATFQETNSI*HTKIER
Trigger: TCTCTCTATCTTGGTATGCCAAATACTGTTGGTTTC...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAACAACAGATCATGTTaGCTTCAATCAGTTAGGGGT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFNNRSC*LQSVRG
Trigger: ACCCCTAACTGATTGAAGCCAACATGATCTGTTGTT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
3UTR CAA 72 bp TTCATACCTTCTGCAGTCTCTCACATTGTATCAGGATaGGTGTGTTGTGAGACCAACACAATAGGAAATAAG +
Preference number: 4 (lower is better)
Translates to: FIPSAVSHIVSG*VCCETNTIGNK
Trigger: CTTATTTCCTATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGAAGGTATGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
3UTR CAA 72 bp CTTTCCCATAGTCACTGCAGAATACCACACTATAGTTaGCTCAGTAATGTGAACACTTTTGCTGTAGGGTAT +
Preference number: 4 (lower is better)
Translates to: LSHSHCRIPHYS*LSNVNTFAVGY
Trigger: ATACCCTACAGCAAAAGTGTTCACATTACTGAGCAAACTATAGTGTGGTATTCTGCAGTGACTATGGGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAACAATAGGAAATAAGTaGAAGCTTAGCAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRTIGNK*KLSSPP
Trigger: AGGAGGACTGCTAAGCTTTCACTTATTTCCTATTGT...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCCCACACTCAAAACAGTaGTTATACTTTTTGTTCCCA +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFPHSKQ*LYFLFP
Trigger: TGGGAACAAAAAGTATAATCACTGTTTTGAGTGTGG...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAGTCCAATCTACAGATaGGACACTGATAAAGGATAT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFSPIYR*DTDKGY
Trigger: ATATCCTTTATCAGTGTCTCATCTGTAGATTGGACT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR TCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGATCCTCCTCCATTAGGTaGAGTATTTCAATGGCAAAA +
Preference number: 4 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRSSSIR*SISMAK
Trigger: TTTTGCCATTGAAATACTTCACCTAATGGAGGAGGA...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR GCA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAATTGTGATTTTTGGCTaGACTTTGGTTTCTGTCATT +
Preference number: 4 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIIVIFG*TLVSVI
Trigger: AATGACAGAAACCAAAGTGCAGCCAAAAATCACAAT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTACATTGTATCAGGATTaGTGTGTTGTGAGACCAACA +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRITLYQD*CVVRPT
Trigger: TGTTGGTCTCACAACACACCAATCCTGATACAATGT...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGAGTTATCTGTTTCCTaGTATTCATACCTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIELSVS*YSYLLQ
Trigger: CTGCAGAAGGTATGAATACCAGGAAACAGATAACTC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR GCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAAAGCTCATGTACTCTaGCAAAAATACCACTACATT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFKAHVL*QKYHYI
Trigger: AATGTAGTGGTATTTTTGGCAGAGTACATGAGCTTT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CCA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCTCTTCATTAATTCCATaGCAAATTTCCCAGATGCTT +
Preference number: 4 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFSSLIP*QISQML
Trigger: AAGCATCTGGGAAATTTGCCATGGAATTAATGAAGA...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTATTGATGATGTTCAATaGGGCATTCTCTCCAGAATT +
Preference number: 4 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIIDDVQ*GILSRI
Trigger: AATTCTGGAGAGAATGCCCCATTGAACATCATCAAT...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CCA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGATTATGTATGTCTCTATaGAATCATTTTCCTGAAGCC +
Preference number: 4 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRLCMSL*NHFPEA
Trigger: GGCTTCAGGAAAATGATTCCATAGAGACATACATAA...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS CCA 90 bp ACGCAGGGCCCGTGGCTGGCGGTGTCCGCGGCCCACGTCGCCCCCTaGACTCGGACCCGAGCCCCCGCCAGTCGCTCACCGAGCCCGGCC +
Preference number: 5 (lower is better)
Translates to: TQGPWLAVSAAHVAP*TRTRAPASRSPSPA
Trigger: GGCCGGGCTCGGTGAGCGACTGGCGGGGGCTCGGGTCCGAGTCCAGGGGGCGACGTGGGCCGCGGACACCGCCAGCCACGGGCCCTGCGT
80% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000595786.5
ENST00000599938.5
CDS TCA 90 bp AAGACGCTCAAGTGGCCCTGTGGAGAGGCCTATGTGGAGAGGAACTaGGGCCTCCCACCGACGGCCAGCTCTGACTCGCAGGCCATGGAG +
Preference number: 5 (lower is better)
Translates to: KTLKWPCGEAYVERN*GLPPTASSDSQAME
Trigger: CTCCATGGCCTGCGAGTCAGAGCTGGCCGTCGGTGGGAGGCCTCAGTTCCTCTCCACATAGGCCTCTCCACAGGGCCACTTGAGCGTCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000595786.5
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CCA 90 bp GAGACAGCGGGGGTGGGTGCAGGGGTGACTTTCAGGACCAGGTCTTaGAAGGCACTACAGCTGCTTCCGCCTTGGTCTCCTGGATGTTGC +
Preference number: 5 (lower is better)
Translates to: ETAGVGAGVTFRTRS*KALQLLPPWSPGCC
Trigger: GCAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCCCCGCTGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS GCA 90 bp TGCTTCCGCCTTGGTCTCCTGGATGTTGCTCTAGAGGACACCAGTTaGCATGGTGGGAAGACGCTCAAGTGGCCCTGTGGAGAGGCCTAT +
Preference number: 5 (lower is better)
Translates to: CFRLGLLDVALEDTS*HGGKTLKWPCGEAY
Trigger: ATAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CCA 90 bp CCTTGGTCTCCTGGATGTTGCTCTAGAGGACACCAGTTGCCATGGTaGGAAGACGCTCAAGTGGCCCTGTGGAGAGGCCTATGTGGAGAG +
Preference number: 5 (lower is better)
Translates to: PWSPGCCSRGHQLPW*EDAQVALWRGLCGE
Trigger: CTCTCCACATAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS GCA 90 bp TCTTGGAAGGCACTACAGCTGCTTCCGCCTTGGTCTCCTGGATGTTaGTCTAGAGGACACCAGTTGCCATGGTGGGAAGACGCTCAAGTG +
Preference number: 5 (lower is better)
Translates to: SWKALQLLPPWSPGC*SRGHQLPWWEDAQV
Trigger: CACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGTCTGGGTTCAGATCTaGGCTCTACCATTTACCAGT +
Preference number: 5 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGVWVQI*ALPFTS
Trigger: ACTGGTAAATGGTAGAGCCAAGATCTGAACCCAGAC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS GCA 90 bp GAGCCTTCCAGCCAAGCTGCTCCTGAATTCCAGGGAGACGTGGATTaGAGCAACTCTGGCGCTATTTCCTATCTGGCAGGTCAACAGAGA +
Preference number: 5 (lower is better)
Translates to: EPSSQAAPEFQGDVD*SNSGAISYLAGQQR
Trigger: TCTCTGTTGACCTGCCAGATAGGAAATAGCGCCAGAGTTGCTGCAATCCACGTCTCCCTGGAATTCAGGAGCAGCTTGGCTGGAAGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000595786.5
ENST00000596172.1
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCCTGCAGTCTCTCACATaGTATCAGGATTGGTGTGTT +
Preference number: 5 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGLQSLT*YQDWCV
Trigger: AACACACCAATCCTGATACAATGTGAGAGACTGCAG...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS TCA 90 bp TACCACAGAGCAGCTGCCTTTTCTCACTCAGACTGGGAGCTCCTGTaGTCTTATTTCCCTCAATCTCCAGGGGATCATGGGCCCGTGACA +
Preference number: 5 (lower is better)
Translates to: YHRAAAFSHSDWELL*SYFPQSPGDHGPVT
Trigger: TGTCACGGGCCCATGATCCCCTGGAGATTGAGGGAAATAAGATCACAGGAGCTCCCAGTCTGAGTGAGAAAAGGCAGCTGCTCTGTGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000597304.5
CDS CCA 90 bp CAGAGCCTGCTGAAACCTTGTTGTAGGTTCCACACTGTACTCACCTaGTCACCCAAAAACCCACAACAACAGGTGGACCTTGTGGCAGGC +
Preference number: 5 (lower is better)
Translates to: QSLLKPCCRFHTVLT*SPKNPQQQVDLVAG
Trigger: GCCTGCCACAAGGTCCACCTGTTGTTGTGGGTTTTTGGGTGACCAGGTGAGTACAGTGTGGAACCTACAACAAGGTTTCAGCAGGCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000593891.1
CDS-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCGCTTTGGCTGACATCTaGATTGTAAGTAAAGGCATG +
Preference number: 5 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGALADI*IVSKGM
Trigger: CATGCCTTTACTTACAATCAAGATGTCAGCCAAAGC...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS TCA 90 bp CACAGGAAAAGCCCACGAGGAGTTCTTCTACACAGCAGAGCCTGCTaGAACCTTGTTGTAGGTTCCACACTGTACTCACCTGGTCACCCA +
Preference number: 5 (lower is better)
Translates to: HRKSPRGVLLHSRAC*NLVVGSTLYSPGHP
Trigger: TGGGTGACCAGGTGAGTACAGTGTGGAACCTACAACAAGGTTTCAGCAGGCTCTGCTGTGTAGAAGAACTCCTCGTGGGCTTTTCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000593891.1
CDS-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCCTCATTTTCTATGGTTaGTCCATGTTTCCTCCATTT +
Preference number: 5 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGLIFYG*SMFPPF
Trigger: AAATGGAGGAAACATGGACAAACCATAGAAAATGAG...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp GCCCTCTCCTCTCGTCTCCAGATTCAGTTGCTCCCTCCCTTCGTCCCTTCAGGCTTCTTCTTTGGTTGTTaGGTAGATTTGCAGTTTGTC +
Preference number: 5 (lower is better)
Translates to: ALSSRLQIQLLPPFVPSGFFFGC*VDLQFV
Trigger: GACAAACTGCAAATCTACCAAACAACCAAAGAAGAA...GCCTGAAGGGACGAAGGGAGGGAGCAACTGAATCTGGAGACGAGAGGAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACCAGGGAGACGTGGATaGCAGCAACTCTGGCGCTAT +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIPGRRG*QQLWRY
Trigger: ATAGCGCCAGAGTTGCTGCAATCCACGTCTCCCTGG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCAACAACAGGTGGACCTaGTGGCAGGCTTCAACACGA +
Preference number: 5 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFNNRWT*WQASTR
Trigger: TCGTGTTGAAGCCTGCCACAAGGTCCACCTGTTGTT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACACCACCTTCTTGTCTaGTTCCAACTGGGATATCAG +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIHHLLV*FQLGYQ
Trigger: CTGATATCCCAGTTGGAACAAGACAAGAAGGTGGTG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTCTGTCACCACCTTCTaGTCTTGTTCCAACTGGGAT +
Preference number: 5 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTSVTTF*SCSNWD
Trigger: ATCCCAGTTGGAACAAGACAAGAAGGTGGTGACAGA...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAACTGAGTGTTGTTCCATaGTGTGATTTCCAGTGCGTC +
Preference number: 5 (lower is better)
Translates to: HCGQKEALQTLDLEATFQLSVVP*CDFQCV
Trigger: GACGCACTGGAAATCACACAATGGAACAACACTCAG...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATATCGACTTACTTCTCATaGCCAGGGGAGTGCGAAAAA +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTISTYFS*PGECEK
Trigger: TTTTTCGCACTCCCCTGGCAATGAGAAGTAAGTCGA...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTATCCTCTTGTGGCTTTaGAGGTTACAACTGGTGCGG +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIILLWL*RLQLVR
Trigger: CCGCACCAGTTGTAACCTCAAAAGCCACAAGAGGAT...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGAACTTATTGCCAAATaGTCAAGGAGCTGGGCCTTG +
Preference number: 5 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFELIAK*SRSWAL
Trigger: CAAGGCCCAGCTCCTTGACAATTTGGCAATAAGTTC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATACTTGGCGAGAACTTATaGCCAAATTGTCAAGGAGCT +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTILGENL*PNCQGA
Trigger: AGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAG...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCCTTGGCGAGAACTTATaGCCAAATTGTCAAGGAGCT +
Preference number: 5 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTLGENL*PNCQGA
Trigger: AGCTCCTTGACAATTTGGCAATAAGTTCTCGCCAAG...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGTCATAAAAGCCATTTaGGCCTCTGTATTGGTCCTC +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIVIKAI*ASVLVL
Trigger: GAGGACCAATACAGAGGCCAAAATGGCTTTTATGAC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCCACATTGTATCAGGATaGGTGTGTTGTGAGACCAAC +
Preference number: 5 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTHIVSG*VCCETN
Trigger: GTTGGTCTCACAACACACCAATCCTGATACAATGTG...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAACACATTGTATCAGGATaGGTGTGTTGTGAGACCAAC +
Preference number: 5 (lower is better)
Translates to: HCGQKEALQTLDLEATFQHIVSG*VCCETN
Trigger: GTTGGTCTCACAACACACCAATCCTGATACAATGTG...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTCCCTCATCACCCCTTaGTTCCACTCCAGCTGTATT +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRISLITP*FHSSCI
Trigger: AATACAGCTGGAGTGGAACAAAGGGGTGATGAGGGA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTCACCACCTTCTTGTCTaGTTCCAACTGGGATATCAG +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIHHLLV*FQLGYQ
Trigger: CTGATATCCCAGTTGGAACAAGACAAGAAGGTGGTG...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTCTGTCACCACCTTCTaGTCTTGTTCCAACTGGGAT +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRISVTTF*SCSNWD
Trigger: ATCCCAGTTGGAACAAGACAAGAAGGTGGTGACAGA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCATTTTGGCCTCTGTATaGGTCCTCTCTTGGATCACT +
Preference number: 5 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFILASV*VLSWIT
Trigger: AGTGATCCAAGAGAGGACCAATACAGAGGCCAAAAT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCCTGCAGTCTCTCACATaGTATCAGGATTGGTGTGTT +
Preference number: 5 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFLQSLT*YQDWCV
Trigger: AACACACCAATCCTGATACAATGTGAGAGACTGCAG...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGACATTGCACTCCACCCTaGATGACAAGAGTGAAACTC +
Preference number: 5 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRHCTPP*MTRVKL
Trigger: GAGTTTCACTCTTGTCATCAAGGGTGGAGTGCAATG...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp GCACACAGAACATACTCCGTTAATAGGGTAGTGGTTAAGTGCATGGACTGTCTGGGTTGTTTGGTAGATTaGCAGTTTGTCTCTCATTTT +
Preference number: 5 (lower is better)
Translates to: AHRTYSVNRVVVKCMDCLGCLVD*QFVSHF
Trigger: AAAATGAGAGACAAACTGCAAATCTACCAAACAACC...CAGACAGTCCATGCACTTAACCACTACCCTATTAACGGAGTATGTTCTGTGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAACTTACTGATGCTGCTTaGAAAGCAATGTGTCCTTCT +
Preference number: 5 (lower is better)
Translates to: HCGQKEALQTLDLEATFQLTDAA*KAMCPS
Trigger: AGAAGGACACATTGCTTTCAAAGCAGCATCAGTAAG...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS TCA 90 bp ATCCAGTGTGAGCTCTCTCAAACTATCTTAGGGATGAAAGATCAATaGGTGCTTTCCTCCAGAAGTTCCTGCAGTAATTCATATCCATCT +
Preference number: 5 (lower is better)
Translates to: IQCELSQTILGMKDQ*VLSSRSSCSNSYPS
Trigger: AGATGGATATGAATTACTGCAGGAACTTCTGGAGGAAAGCACTCATTGATCTTTCATCCCTAAGATAGTTTGAGAGAGCTCACACTGGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000301475.1
ENST00000597304.5
ENST00000601372.6
CDS-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCGAAAGCTCTCCAATATaGATGATGTTCAATGGGGCA +
Preference number: 5 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFESSPI*MMFNGA
Trigger: TGCCCCATTGAACATCATCAATATTGGAGAGCTTTC...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CATTGTGGTCAAAAAGAAGCTCTTCAAACTCTAGACCTTGAGGCCACTTTCCAAAGAAACCAACAGTATTaGGCATACCAAGATAGAGAG +
Preference number: 5 (lower is better)
Translates to: HCGQKEALQTLDLEATFQRNQQY*AYQDRE
Trigger: CTCTCTATCTTGGTATGCCAAATACTGTTGGTTTCT...TTGGAAAGTGGCCTCAAGGTCTAGAGTTTGAAGAGCTTCTTTTTGACCACAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp TGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCTTCACTCCAATACCCAAATaGTCTCTGGATCTGCTATTG +
Preference number: 5 (lower is better)
Translates to: WQISQMLLSYLFPGIHTFTPIPK*SLDLLL
Trigger: CAATAGCAGATCCAGAGACAATTTGGGTATTGGAGT...GAAGGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAGTCCTTCTTCTTTGGTaGTTTGGTAGATTTGCAGTT +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIVLLLW*FGRFAV
Trigger: AACTGCAAATCTACCAAACAACCAAAGAAGAAGGAC...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTGCTTTGGCTGACATCTaGATTGTAAGTAAAGGCATG +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRIALADI*IVSKGM
Trigger: CATGCCTTTACTTACAATCAAGATGTCAGCCAAAGC...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp TCTGCAGTCTCTCACATTGTATCAGGATTGGTGTGTTGTGAGACCAACACAATAATACCACACTATAGTTaGCTCAGTAATGTGAACACT +
Preference number: 5 (lower is better)
Translates to: SAVSHIVSGLVCCETNTIIPHYS*LSNVNT
Trigger: AGTGTTCACATTACTGAGCAAACTATAGTGTGGTAT...TATTGTGTTGGTCTCACAACACACCAATCCTGATACAATGTGAGAGACTGCAGA
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp CCATGGCAAATTTCCCAGATGCTTCTGAGTTATCTGTTTCCTGGTATTCATACCATACCACACTATAGTTaGCTCAGTAATGTGAACACT +
Preference number: 5 (lower is better)
Translates to: PWQISQMLLSYLFPGIHTIPHYS*LSNVNT
Trigger: AGTGTTCACATTACTGAGCAAACTATAGTGTGGTAT...GGTATGAATACCAGGAAACAGATAACTCAGAAGCATCTGGGAAATTTGCCATGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGAATTTTTGGCTGCACTTaGGTTTCTGTCATTGTGGTC +
Preference number: 5 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRIFGCT*VSVIVV
Trigger: GACCACAATGACAGAAACCAAAGTGCAGCCAAAAAT...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGATTCAATGGCAAAACTTaGCCTGGCACACAGAACATA +
Preference number: 5 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRFNGKT*PGTQNI
Trigger: TATGTTCTGTGTGCCAGGCAAAGTTTTGCCATTGAA...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTTTGAAGCCACAAAATTaGCGGGGATCATTTGTTATG +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRILKPQN*RGSFVM
Trigger: CATAACAAATGATCCCCGCAAATTTTGTGGCTTCAA...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000301475.1
ENST00000601372.6
CDS-3UTR CAA 90 bp GACCAATTTATAGGTTTACCAGTTAGATTCTGCATCCTGCTGGAAGTTAACAGATTGAAGCCACAAAATTaGCGGGGATCATTTGTTATG +
Preference number: 5 (lower is better)
Translates to: DQFIGLPVRFCILLEVNRLKPQN*RGSFVM
Trigger: CATAACAAATGATCCCCGCAAATTTTGTGGCTTCAA...TCTGTTAACTTCCAGCAGGATGCAGAATCTAACTGGTAAACCTATAAATTGGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS-3UTR CAA 90 bp AACAGAAAGCTCTCCAATATTGATGATGTTCAATGGGGCATTCTCTCCAGAATTAACACGAATCTGAGCTaGAATGATGCTTTTCTCATC +
Preference number: 5 (lower is better)
Translates to: NRKLSNIDDVQWGILSRINTNLS*NDAFLI
Trigger: GATGAGAAAAGCATCATTCAAGCTCAGATTCGTGTT...AATTCTGGAGAGAATGCCCCATTGAACATCATCAATATTGGAGAGCTTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000601372.6
CDS CCA 72 bp CCGTGGCTGGCGGTGTCCGCGGCCCACGTCGCCCCCTaGACTCGGACCCGAGCCCCCGCCAGTCGCTCACCG +
Preference number: 6 (lower is better)
Translates to: PWLAVSAAHVAP*TRTRAPASRSP
Trigger: CGGTGAGCGACTGGCGGGGGCTCGGGTCCGAGTCCAGGGGGCGACGTGGGCCGCGGACACCGCCAGCCACGG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000595786.5
ENST00000599938.5
CDS TCA 72 bp GGAGAGGAACTGAGGCCTCCCACCGACGGCCAGCTCTaGCTCGCAGGCCATGGAGTGGCCCCCGGTACCCGT +
Preference number: 6 (lower is better)
Translates to: GEELRPPTDGQL*LAGHGVAPGTR
Trigger: ACGGGTACCGGGGGCCACTCCATGGCCTGCGAGTCAGAGCTGGCCGTCGGTGGGAGGCCTCAGTTCCTCTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000595786.5
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS GCA 72 bp ATGCTCCAAGTCTCCGTGGCCTCCTCCCTCTCGGGCTaGTGGGGATGGGCCCTCCTCAACCCATCCTTCCCA +
Preference number: 6 (lower is better)
Translates to: MLQVSVASSLSG*WGWALLNPSFP
Trigger: TGGGAAGGATGGGTTGAGGAGGGCCCATCCCCAGCAGCCCGAGAGGGAGGAGGCCACGGAGACTTGGAGCAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000301475.1
CDS CAA 72 bp GGGGGTGGGTGCAGGGGTGACTTTCAGGACCAGGTCTaGGAAGGCACTACAGCTGCTTCCGCCTTGGTCTCC +
Preference number: 6 (lower is better)
Translates to: GGGCRGDFQDQV*EGTTAASALVS
Trigger: GGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CAA 90 bp GGAGACAGCGGGGGTGGGTGCAGGGGTGACTTTCAGGACCAGGTCTaGGAAGGCACTACAGCTGCTTCCGCCTTGGTCTCCTGGATGTTG +
Preference number: 6 (lower is better)
Translates to: GDSGGGCRGDFQDQV*EGTTAASALVSWML
Trigger: CAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCCCCGCTGTCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CCA 72 bp GGGGTGGGTGCAGGGGTGACTTTCAGGACCAGGTCTTaGAAGGCACTACAGCTGCTTCCGCCTTGGTCTCCT +
Preference number: 6 (lower is better)
Translates to: GVGAGVTFRTRS*KALQLLPPWSP
Trigger: AGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CAA 90 bp CTGCTTCCGCCTTGGTCTCCTGGATGTTGCTCTAGAGGACACCAGTaGCCATGGTGGGAAGACGCTCAAGTGGCCCTGTGGAGAGGCCTA +
Preference number: 6 (lower is better)
Translates to: LLPPWSPGCCSRGHQ*PWWEDAQVALWRGL
Trigger: TAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CCA 72 bp CCTGGATGTTGCTCTAGAGGACACCAGTTGCCATGGTaGGAAGACGCTCAAGTGGCCCTGTGGAGAGGCCTA +
Preference number: 6 (lower is better)
Translates to: PGCCSRGHQLPW*EDAQVALWRGL
Trigger: TAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000595786.5
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CCA 72 bp TCTCCTGGATGTTGCTCTAGAGGACACCAGTTGCCATaGTGGGAAGACGCTCAAGTGGCCCTGTGGAGAGGC +
Preference number: 6 (lower is better)
Translates to: SPGCCSRGHQLP*WEDAQVALWRG
Trigger: GCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000595786.5
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CAA 72 bp CCTTGGTCTCCTGGATGTTGCTCTAGAGGACACCAGTaGCCATGGTGGGAAGACGCTCAAGTGGCCCTGTGG +
Preference number: 6 (lower is better)
Translates to: PWSPGCCSRGHQ*PWWEDAQVALW
Trigger: CCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS GCA 72 bp AGCCTTCAGATGATGCAGACCCAGCTGACAGCCTTCTaGAAGTTTCCAGCCAGAGCCTTCCAGCCAAGCTGC +
Preference number: 6 (lower is better)
Translates to: SLQMMQTQLTAF*KFPARAFQPSC
Trigger: GCAGCTTGGCTGGAAGGCTCTGGCTGGAAACTTGCAGAAGGCTGTCAGCTGGGTCTGCATCATCTGAAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000595786.5
ENST00000596172.1
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS GCA 72 bp CTTGGTCTCCTGGATGTTGCTCTAGAGGACACCAGTTaGCATGGTGGGAAGACGCTCAAGTGGCCCTGTGGA +
Preference number: 6 (lower is better)
Translates to: LGLLDVALEDTS*HGGKTLKWPCG
Trigger: TCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS GCA 72 bp GCACTACAGCTGCTTCCGCCTTGGTCTCCTGGATGTTaGTCTAGAGGACACCAGTTGCCATGGTGGGAAGAC +
Preference number: 6 (lower is better)
Translates to: ALQLLPPWSPGC*SRGHQLPWWED
Trigger: GTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CCA 72 bp ACCAGGTCTTGGAAGGCACTACAGCTGCTTCCGCCTTaGTCTCCTGGATGTTGCTCTAGAGGACACCAGTTG +
Preference number: 6 (lower is better)
Translates to: TRSWKALQLLPP*SPGCCSRGHQL
Trigger: CAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS CAA 72 bp GTGGACCTTGTGGCAGGCTTCAACACGAATCTGAGCTaGAATGATGCTTTTCTCATCGAGCCCGGCCCCTCC +
Preference number: 6 (lower is better)
Translates to: VDLVAGFNTNLS*NDAFLIEPGPS
Trigger: GGAGGGGCCGGGCTCGATGAGAAAAGCATCATTCAAGCTCAGATTCGTGTTGAAGCCTGCCACAAGGTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000593891.1
ENST00000596172.1
ENST00000601372.6
CDS CCA 72 bp CTTCCAGCCAAGCTGCTCCTGAATTCCAGGGAGACGTaGATTGCAGCAACTCTGGCGCTATTTCCTATCTGG +
Preference number: 6 (lower is better)
Translates to: LPAKLLLNSRET*IAATLALFPIW
Trigger: CCAGATAGGAAATAGCGCCAGAGTTGCTGCAATCCACGTCTCCCTGGAATTCAGGAGCAGCTTGGCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000595786.5
ENST00000596172.1
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS TCA 72 bp GCAGCTGCCTTTTCTCACTCAGACTGGGAGCTCCTGTaGTCTTATTTCCCTCAATCTCCAGGGGATCATGGG +
Preference number: 6 (lower is better)
Translates to: AAAFSHSDWELL*SYFPQSPGDHG
Trigger: CCCATGATCCCCTGGAGATTGAGGGAAATAAGATCACAGGAGCTCCCAGTCTGAGTGAGAAAAGGCAGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000597304.5
CDS CCA 72 bp ACGTGGATTGCAGCAACTCTGGCGCTATTTCCTATCTaGCAGGTCAACAGAGACACAGTGGCCCACACTCTT +
Preference number: 6 (lower is better)
Translates to: TWIAATLALFPI*QVNRDTVAHTL
Trigger: AAGAGTGTGGGCCACTGTGTCTCTGTTGACCTGCCAGATAGGAAATAGCGCCAGAGTTGCTGCAATCCACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000595786.5
ENST00000596172.1
ENST00000597304.5
ENST00000599938.5
ENST00000601372.6
CDS TCA 72 bp AGCCCACGAGGAGTTCTTCTACACAGCAGAGCCTGCTaGAACCTTGTTGTAGGTTCCACACTGTACTCACCT +
Preference number: 6 (lower is better)
Translates to: SPRGVLLHSRAC*NLVVGSTLYSP
Trigger: AGGTGAGTACAGTGTGGAACCTACAACAAGGTTTCAGCAGGCTCTGCTGTGTAGAAGAACTCCTCGTGGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000593891.1
CDS CCA 72 bp CTGAAACCTTGTTGTAGGTTCCACACTGTACTCACCTaGTCACCCAAAAACCCACAACAACAGGTGGACCTT +
Preference number: 6 (lower is better)
Translates to: LKPCCRFHTVLT*SPKNPQQQVDL
Trigger: AAGGTCCACCTGTTGTTGTGGGTTTTTGGGTGACCAGGTGAGTACAGTGTGGAACCTACAACAAGGTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000593891.1
CDS CCA 72 bp TTCCTTAAGATACCTTCACTCTTAGTGACTTCAATGTaGTTACAACCCCAGCACAGGAAAAGCCCACGAGGA +
Preference number: 6 (lower is better)
Translates to: FLKIPSLLVTSM*LQPQHRKSPRG
Trigger: TCCTCGTGGGCTTTTCCTGTGCTGGGGTTGTAACCACATTGAAGTCACTAAGAGTGAAGGTATCTTAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000593891.1