Pregenerated sensors for ZNF404 (Homo sapiens)
Ensembl gene IDs: ENSG00000176222Ensembl transcript IDs: ENST00000324394.7, ENST00000587539.2, ENST00000588094.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCCTTTTCCATGTCTCCTaGTGGTACGCATTTACTTCA | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLLFHVS*WYAFTS Trigger: TGAAGTAAATGCGTACCATCAGGAGACATGGAAAAG...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR TCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCATGTTTAAGAAGGCTTaGGCCCTTACCAAAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLMFKKA*ALTKSL Trigger: AAGGCTTTTGGTAAGGGCTCAAGCCTTCTTAAACAT...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR GCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCCAACAAGTAGATAGCTaGGAACAAAGGCCTTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLQQVDS*EQRPFH Trigger: GTGAAAAGGCCTTTGTTCGCAGCTATCTACTTGTTG...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR CCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCAGTAAAAATGTGCCATaGCTAAAGGCTTTCCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLSKNVP*LKAFPL Trigger: GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACT...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR TCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCCTGTACAAATCCCTCTaGTCCGAGTTTAAATATTCC | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLLYKSL*SEFKYS Trigger: GGAATATTTAAACTCGGATCAGAGGGATTTGTACAG...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR TCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCATGTTGGTAAAGACTTaGACGATGACCAAAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLMLVKT*TMTKSL Trigger: AAGGCTTTTGGTCATCGTTCAAGTCTTTACCAACAT...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR GCA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCATACGATGTGCCAGATaGCTTTCCAAGTATTTATAT | + |
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Preference number: 4 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLIRCAR*LSKYLY Trigger: ATATAAATACTTGGAAAGGCATCTGGCACATCGTAT...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS GCA 90 bp | GAGCTGGCTCCTCGGCGCTTCCAAGGGGGAAATATCCAGGAGGGATaGCTATTCCTGAGAACTCTTTATCGAGTCTTCTCAGAGCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: ELAPRRFQGGNIQEG*LFLRTLYRVFSEPA Trigger: GGCAGGCTCTGAGAAGACTCGATAAAGAGTTCTCAGGAATAGGCATCCCTCCTGGATATTTCCCCCTTGGAAGCGCCGAGGAGCCAGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000588094.1 |
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| CDS GCA 90 bp | GGGATGCCTATTCCTGAGAACTCTTTATCGAGTCTTCTCAGAGCCTaGCTTGAGGCCGCAACCAATTTCAAAAATCTCGTCTCAAGATCA | + |
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Preference number: 5 (lower is better) Translates to: GMPIPENSLSSLLRA*LEAATNFKNLVSRS Trigger: TGATCTTGAGACGAGATTTTTGAAATTGGTTGCGGCCTCAAGGCAGGCTCTGAGAAGACTCGATAAAGAGTTCTCAGGAATAGGCATCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000588094.1 |
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| CDS-3UTR CAA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCCTGATGCTGTGTAAGTaGAGAGCCTCTACAAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLLMLCK*RASTKG Trigger: GCCTTTTGTAGAGGCTCTCAACTTACACAGCATCAG...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR CAA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCGTCTCCCAAATTCAATaGTGTACTGTGGGTCAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLVSQIQ*CTVGQF Trigger: GAACTGACCCACAGTACACAATTGAATTTGGGAGAC...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR CAA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCATGAATTGTCTCATGTaGAGTAAGTCGATCACTGCG | + |
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Preference number: 5 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLMNCLM*SKSITA Trigger: CGCAGTGATCGACTTACTCAACATGAGACAATTCAT...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR CAA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCCACTTTAGGTCTCTGTaGTCTCCCAAATTCAATTGT | + |
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Preference number: 5 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLHFRSL*SPKFNC Trigger: ACAATTGAATTTGGGAGACAACAGAGACCTAAAGTG...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS-3UTR CAA 90 bp | CATCATAATAGTGACAACAGTAAAAATGTGCCATGGCTAAAGGCTTTCCCTCTCTATGTTGGTAAAGACTaGAACGATGACCAAAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: HHNSDNSKNVPWLKAFPLYVGKD*NDDQKP Trigger: AGGCTTTTGGTCATCGTTCAAGTCTTTACCAACATA...GAGAGGGAAAGCCTTTAGCCATGGCACATTTTTACTGTTGTCACTATTATGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS CCA 90 bp | TCCCACTTTAGGTCTCTGTTGTCTCCCAAATTCAATTGTGTACTGTaGGTCAGTTCTGAAAATAAACCTCATAAGGTTGAAGGTTTTATT | + |
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Preference number: 5 (lower is better) Translates to: SHFRSLLSPKFNCVL*VSSENKPHKVEGFI Trigger: AATAAAACCTTCAACCTTATGAGGTTTATTTTCAGAACTGACCCACAGTACACAATTGAATTTGGGAGACAACAGAGACCTAAAGTGGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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| CDS GCA 72 bp | CCTCGGCGCTTCCAAGGGGGAAATATCCAGGAGGGATaGCTATTCCTGAGAACTCTTTATCGAGTCTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: PRRFQGGNIQEG*LFLRTLYRVFS Trigger: TGAGAAGACTCGATAAAGAGTTCTCAGGAATAGGCATCCCTCCTGGATATTTCCCCCTTGGAAGCGCCGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000588094.1 |
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| CDS CAA 72 bp | CAACCAGATGGGAGTAGGAGAGAAACTGGAACAGTGTaGACCTTCCCAATACAAGAGAGGCCAAGATCAGTG | + |
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Preference number: 6 (lower is better) Translates to: QPDGSRRETGTV*TFPIQERPRSV Trigger: CACTGATCTTGGCCTCTCTTGTATTGGGAAGGTCAACACTGTTCCAGTTTCTCTCCTACTCCCATCTGGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588094.1 |
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| CDS GCA 72 bp | ATTCCTGAGAACTCTTTATCGAGTCTTCTCAGAGCCTaGCTTGAGGCCGCAACCAATTTCAAAAATCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: IPENSLSSLLRA*LEAATNFKNLV Trigger: GACGAGATTTTTGAAATTGGTTGCGGCCTCAAGGCAGGCTCTGAGAAGACTCGATAAAGAGTTCTCAGGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000588094.1 |
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| CDS CAA 72 bp | CTGAGAACTCTTTATCGAGTCTTCTCAGAGCCTGCCTaGAGGCCGCAACCAATTTCAAAAATCTCGTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: LRTLYRVFSEPA*RPQPISKISSQ Trigger: TTGAGACGAGATTTTTGAAATTGGTTGCGGCCTCAAGGCAGGCTCTGAGAAGACTCGATAAAGAGTTCTCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000588094.1 |
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| CDS CCA 72 bp | AGGTCTCTGTTGTCTCCCAAATTCAATTGTGTACTGTaGGTCAGTTCTGAAAATAAACCTCATAAGGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: RSLLSPKFNCVL*VSSENKPHKVE Trigger: TTCAACCTTATGAGGTTTATTTTCAGAACTGACCCACAGTACACAATTGAATTTGGGAGACAACAGAGACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000324394.7 ENST00000587539.2 |
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