Pregenerated sensors for ZNF280C (Homo sapiens)
Ensembl gene IDs: ENSG00000056277Ensembl transcript IDs: ENST00000370978.9, ENST00000447817.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGATTTAGATACAAGATGAAATCTAGGCGAGGCAGCCACTGGATTTaGTGGTGGGTCTCTGCAGCGTTGACTTGCAGTCCTGAATATTTC | + |
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Preference number: 5 (lower is better) Translates to: RFRYKMKSRRGSHWI*WWVSAALTCSPEYF Trigger: GAAATATTCAGGACTGCAAGTCAACGCTGCAGAGACCCACCATCAAATCCAGTGGCTGCCTCGCCTAGATTTCATCTTGTATCTAAATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS TCA 90 bp | TGTAAAATCAGGTTTAGACGCATTCTCAACAGTAACAGAGCTTTGTaGAGATTTAGATACAAGATGAAATCTAGGCGAGGCAGCCACTGG | + |
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Preference number: 5 (lower is better) Translates to: CKIRFRRILNSNRAL*RFRYKMKSRRGSHW Trigger: CCAGTGGCTGCCTCGCCTAGATTTCATCTTGTATCTAAATCTTCACAAAGCTCTGTTACTGTTGAGAATGCGTCTAAACCTGATTTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS TCA 72 bp | TACAAGATGAAATCTAGGCGAGGCAGCCACTGGATTTaGTGGTGGGTCTCTGCAGCGTTGACTTGCAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: YKMKSRRGSHWI*WWVSAALTCSP Trigger: AGGACTGCAAGTCAACGCTGCAGAGACCCACCATCAAATCCAGTGGCTGCCTCGCCTAGATTTCATCTTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS CCA 72 bp | GTAGAAAACTCATGGGGAGTGTGTGTACTCTCAATGTaGCACTGCAGTTGGAAGGGTGTGGGATATTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: VENSWGVCVLSM*HCSWKGVGYCR Trigger: CCGGCAATATCCCACACCCTTCCAACTGCAGTGCCACATTGAGAGTACACACACTCCCCATGAGTTTTCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS CAA 72 bp | GAAAAGAAGTGCCTGGAGCGCAACCGAAAGGTGCAGTaGGTAATTTTGACTGGAGAGGTCCAAGTGAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: EKKCLERNRKVQ*VILTGEVQVKL Trigger: GAGCTTCACTTGGACCTCTCCAGTCAAAATTACCAACTGCACCTTTCGGTTGCGCTCCAGGCACTTCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS GCA 72 bp | ATGTACGATGCTGCGCCTTATGTTCAGCTTTCTCCTTaGTGGTCAAAAATTGTAGTCTGCATTTTGGGCAAC | + |
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Preference number: 6 (lower is better) Translates to: MYDAAPYVQLSP*WSKIVVCILGN Trigger: GTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS CAA 72 bp | AATGTACGATGCTGCGCCTTATGTTCAGCTTTCTCCTaGCTGGTCAAAAATTGTAGTCTGCATTTTGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: NVRCCALCSAFS*LVKNCSLHFGQ Trigger: TTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS CCA 72 bp | ATTGCTGGTATGTCTTGGGATGGTGGTAGTGATTCCTaGGTCGAGTCAAACAGTAAAATTGAAGAATTATCC | + |
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Preference number: 6 (lower is better) Translates to: IAGMSWDGGSDS*VESNSKIEELS Trigger: GGATAATTCTTCAATTTTACTGTTTGACTCGACCCAGGAATCACTACCACCATCCCAAGACATACCAGCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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| CDS TCA 72 bp | CTTGTATTAACTTTACTTGCAGTGGATGTAGTTGCATaGAGCTTACTTGTCTTAGATCTACTGGCATTAGAT | + |
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Preference number: 6 (lower is better) Translates to: LVLTLLAVDVVA*SLLVLDLLALD Trigger: ATCTAATGCCAGTAGATCTAAGACAAGTAAGCTTCATGCAACTACATCCACTGCAAGTAAAGTTAATACAAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000370978.9 ENST00000447817.1 |
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