RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for WASHC4 (Homo sapiens)

Ensembl gene IDs: ENSG00000136051

Ensembl transcript IDs: ENST00000311317.8, ENST00000332180.10, ENST00000547171.1, ENST00000547404.1, ENST00000550036.1, ENST00000550053.5, ENST00000552203.1, ENST00000620430.5

Found 276 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCTATTGCCTTGAGAAGTTCAACAAGCCTGCACAATGCCTTAACTaGGGTTTTGGTCATTGGCTTTTGCATGGACATGTAGAGATTCAT +
Preference number: 1 (lower is better)
Translates to: LYCLEKFNKPAQCLN*GFGHWLLHGHVEIH
Trigger: ATGAATCTCTACATGTCCATGCAAAAGCCAATGACCAAAACCTCAGTTAAGGCATTGTGCAGGCTTGTTGAACTTCTCAAGGCAATAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR TCA 90 bp ACAGCAATTCAAATTCCTGTAGATAGACATCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGAGTTTTTCATCTTGACTGGCTGACT +
Preference number: 1 (lower is better)
Translates to: TAIQIPVDRHPVASE*DSWFVRVFHLDWLT
Trigger: AGTCAGCCAGTCAAGATGAAAAACTCTTACAAACCATGAATCTCACTCAGAAGCGACTGGATGTCTATCTACAGGAATTTGAATTGCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR TCA 90 bp CATGAAATTAACAATGAAAGAAGGATCATCAGTTATACTGTACACTaGGAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCC +
Preference number: 1 (lower is better)
Translates to: HEINNERRIISYTVH*EYIKHLCLTSSIKA
Trigger: GGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTTCTTTCATTGTTAATTTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR TCA 90 bp TTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATATaGTTATCAATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGT +
Preference number: 1 (lower is better)
Translates to: FSNLLYIVQWSFSVI*LSIISSRVSKTVSS
Trigger: ACTGCTAACAGTTTTGCTCACCCTGGATGAAATTATTGATAATCATATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR-3UTR TCA 90 bp CCATCCGTATCATTTCACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCCTTTCATGCCAACTTTaGAAGGGTTTCGGTCATCCA +
Preference number: 2 (lower is better)
Translates to: PSVSFHNRISRHSAVRQVLSCQL*KGFGHP
Trigger: TGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG...GACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTGAAATGATACGGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTGCAGAATTTCGTGTGTaGTCACTGAGGACTGAATCC +
Preference number: 2 (lower is better)
Translates to: HNRISRHSAVRQVSIACFAEFRV*SLRTES
Trigger: GGATTCAGTCCTCAGTGATCACACACGAAATTCTGC...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR GCA 90 bp GACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTAGTTTCTTCTTCCTTCCTGACTGGGAAGATGTaGCTCTGTCATAACCAGTCC +
Preference number: 2 (lower is better)
Translates to: DTVLSDRSPLLVLVSSSFLTGKM*LCHNQS
Trigger: GGACTGGTTATGACAGAGGCACATCTTCCCAGTCAG...GAAGGAAGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CCA 90 bp GACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTAGTTTCTTCTTCCTTCGTTCCAAAGTCTGACTaGGAAGATGTGCCTCTGTCA +
Preference number: 2 (lower is better)
Translates to: DTVLSDRSPLLVLVSSSFVPKSD*EDVPLS
Trigger: TGACAGAGGCACATCTTCCCAGTCAGACTTTGGAAC...GAAGGAAGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR CAA 90 bp TACATAGCCCATAGCATTACCAATCTGGCTGATGAGTTGCCTGAATaGATCAAGGTAGCTCTGTCCCTCAGGTGTTACTCCAAGTTTTCT +
Preference number: 2 (lower is better)
Translates to: YIAHSITNLADELPE*IKVALSLRCYSKFS
Trigger: AGAAAACTTGGAGTAACACCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGTAATGCTATGGGCTATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGCATTGCTGCTACAATaGAGACCACCAGATCTTATC +
Preference number: 2 (lower is better)
Translates to: EALLLCSLTPFKFVSRILALLLQ*RPPDLI
Trigger: GATAAGATCTGGTGGTCTTCATTGTAGCAGCAATGC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATCATCTCACTATAAGTaGCCCAGTCATGAAGGGCTA +
Preference number: 2 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSSHYK*PSHEGL
Trigger: TAGCCCTTCATGACTGGGCCACTTATAGTGAGATGA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp GACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTAGTTTCTTCTTCCTTCTATTTTCCAGAGATGTaGCCCAGGAAACAATTCATC +
Preference number: 2 (lower is better)
Translates to: DTVLSDRSPLLVLVSSSFYFPEM*PRKQFI
Trigger: GATGAATTGTTTCCTGGGTCACATCTCTGGAAAATA...GAAGGAAGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR CAA 90 bp AGTTTCTCATCTCACTATAAGTGGCCCAGTCATGAAGGGCTACAGTaGTTAGATTGTAGAAAGTCTTGTCTAGGTAGTGAGTTACGTAAG +
Preference number: 2 (lower is better)
Translates to: SFSSHYKWPSHEGLQ*LDCRKSCLGSELRK
Trigger: CTTACGTAACTCACTACCTAGACAAGACTTTCTACAATCTAACAACTGTAGCCCTTCATGACTGGGCCACTTATAGTGAGATGAGAAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR CAA 90 bp TTCACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATaGCTTGTTTTAGTTTCTTCTTCCTTCTCTTTCTTTTCTTGGTTT +
Preference number: 2 (lower is better)
Translates to: FTTGSADTVLSDRSP*LVLVSSSFSFFSWF
Trigger: AAACCAAGAAAAGAAAGAGAAGGAAGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATATTTTCCAGAGATGTaGCCCAGGAAACAATTCATC +
Preference number: 2 (lower is better)
Translates to: EALLLCSLTPFKFVSRILYFPEM*PRKQFI
Trigger: GATGAATTGTTTCCTGGGTCACATCTCTGGAAAATA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR TCA 90 bp ACACTTAGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTCGAGGTGATAGTTTATaGATCTGGATTTGCCCTTTT +
Preference number: 2 (lower is better)
Translates to: TLSAKETISRRCFVLGPFRGDSL*IWICPF
Trigger: AAAAGGGCAAATCCAGATTCATAAACTATCACCTCG...AAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACTAAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp AGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGAGTGCAGATACTCCTCCATTaGGAGAATCAAATTGTTGTT +
Preference number: 2 (lower is better)
Translates to: SAKETISRRCFVLGPFRVQILLH*ENQIVV
Trigger: AACAACAATTTGATTCTCTCAATGGAGGAGTATCTG...CACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGTCATCCAGCTTTAAATaGGTATGCACAGAAAGTCGC +
Preference number: 2 (lower is better)
Translates to: EGQRGNNYIEISEMYILWSSSFK*VCTESR
Trigger: GCGACTTTCTGTGCATACTCATTTAAAGCTGGATGA...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR GCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATACATAAAACACTTGTaGCTCACCTCTAGTATCAAA +
Preference number: 2 (lower is better)
Translates to: EALLLCSLTPFKFVSRILYIKHL*LTSSIK
Trigger: TTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR GCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGGTACTAATACTATATaGATACAAGAAGCCCTGTAT +
Preference number: 2 (lower is better)
Translates to: EALLLCSLTPFKFVSRILGTNTI*IQEALY
Trigger: ATACAGGGCTTCTTGTATGCATATAGTATTAGTACC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAAACTAACAGCTTGCTaGGCACAAAATTTACTCAAA +
Preference number: 2 (lower is better)
Translates to: EALLLCSLTPFKFVSRILKLTAC*AQNLLK
Trigger: TTTGAGTAAATTTTGTGCCCAGCAAGCTGTTAGTTT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCGAGGTGATAGTTTATaGATCTGGATTTGCCCTTTT +
Preference number: 2 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYRGDSL*IWICPF
Trigger: AAAAGGGCAAATCCAGATTCATAAACTATCACCTCG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR GCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGAGGACTGAATCCAAATaGCTTGCTGCTTTTAATGTT +
Preference number: 2 (lower is better)
Translates to: EGQRGNNYIEISEMYILWRTESK*LAAFNV
Trigger: AACATTAAAAGCAGCAAGGCATTTGGATTCAGTCCT...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR TCA 90 bp ATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGCTGAATTCCAAATTTTaGAGGATTGTGATGGACAGA +
Preference number: 2 (lower is better)
Translates to: ISFHPVIALLASARTFQMLNSKF*RIVMDR
Trigger: TCTGTCCATCACAATCCTTCAAAATTTGGAATTCAG...CATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR GCA 72 bp ATCAAGGCCCTGTTCCAAAGTCTGACTGGGAAGATGTaGCTCTGTCATAACCAGTCCATAACGCTGAGTAGC +
Preference number: 3 (lower is better)
Translates to: IKALFQSLTGKM*LCHNQSITLSS
Trigger: GCTACTCAGCGTTATGGACTGGTTATGACAGAGGCACATCTTCCCAGTCAGACTTTGGAACAGGGCCTTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp CCATCCGTATCATTTCACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCGGAGATGTATATTCTTaGGCCTTCGAAATTCTGGAG +
Preference number: 3 (lower is better)
Translates to: PSVSFHNRISRHSAVRQVGDVYS*AFEILE
Trigger: CTCCAGAATTTCGAAGGCCAAAGAATATACATCTCC...GACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTGAAATGATACGGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATATACTGAAGCCCTGTaGCTCTGCAGTTTGACACCA +
Preference number: 3 (lower is better)
Translates to: EALLLCSLTPFKFVSRILYTEAL*LCSLTP
Trigger: TGGTGTCAAACTGCAGAGCAACAGGGCTTCAGTATA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR GCA 72 bp CCAACACTTAGTGCCAAAGAAACAATAAGTCGCCGTTaGTTTGTGCTTGGTCCATTTAGAGTGTTTTCAGCC +
Preference number: 3 (lower is better)
Translates to: PTLSAKETISRR*FVLGPFRVFSA
Trigger: GGCTGAAAACACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACTAAGTGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTCAAATTCCAACATACTaGTCTCTCTGGTCAATTTCA +
Preference number: 3 (lower is better)
Translates to: HNRISRHSAVRQVSIACFQIPTY*SLWSIS
Trigger: TGAAATTGACCAGAGAGACAAGTATGTTGGAATTTG...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp AGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGAGTGATGAAGAGCCTGATGTaGAAGGTGCTGTGTTATATG +
Preference number: 3 (lower is better)
Translates to: SAKETISRRCFVLGPFRVMKSLM*KVLCYM
Trigger: CATATAACACAGCACCTTCAACATCAGGCTCTTCAT...CACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAGTACAAACAGGGCATaGTACACCCATTCTAAAAGC +
Preference number: 3 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSTNRA*YTHSKS
Trigger: GCTTTTAGAATGGGTGTACAATGCCCTGTTTGTACT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR CAA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAGCCTTAACTGAGGTTTaGGTCATTGGCTTTTGCATG +
Preference number: 3 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRALTEV*VIGFCM
Trigger: CATGCAAAAGCCAATGACCAAAACCTCAGTTAAGGC...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAATTAAAGTATTTATCTaGGGCTGGCAAGTTACCCTG +
Preference number: 3 (lower is better)
Translates to: EALLLCSLTPFKFVSRILIKVFI*GWQVTL
Trigger: CAGGGTAACTTGCCAGCCCAAGATAAATACTTTAAT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR CAA 90 bp TGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCCCTGAATTCCAAATTTaGAAGGATTGTGATGGACAG +
Preference number: 3 (lower is better)
Translates to: CSIQAWNIIPSSNCPSSFPEFQI*KDCDGQ
Trigger: CTGTCCATCACAATCCTTCAAAATTTGGAATTCAGG...GAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR-3UTR CAA 90 bp GTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCACCTGAATTCCAAATTTaGAAGGATTGTGATGGACAG +
Preference number: 3 (lower is better)
Translates to: VLYRPGISFHPVIALLASPEFQI*KDCDGQ
Trigger: CTGTCCATCACAATCCTTCAAAATTTGGAATTCAGG...TGAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTCAAATAGAAACATCTaGTACCCTCAAGTCCAGGCA +
Preference number: 3 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHSNRNI*YPQVQA
Trigger: TGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR CAA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAATTAAAGTATTTATCTaGGGCTGGCAAGTTACCCTG +
Preference number: 3 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRIKVFI*GWQVTL
Trigger: CAGGGTAACTTGCCAGCCCAAGATAAATACTTTAAT...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAATTGAGAGAATCAAATaGTTGTTCTATACAGGCCTG +
Preference number: 3 (lower is better)
Translates to: EALLLCSLTPFKFVSRILIERIK*LFYTGL
Trigger: CAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAACAGATACTCCTCCATaGAGAGAATCAAATTGTTGT +
Preference number: 3 (lower is better)
Translates to: EALLLCSLTPFKFVSRILTDTPP*RESNCC
Trigger: ACAACAATTTGATTCTCTCAATGGAGGAGTATCTGT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR TCA 72 bp CCAACTTTGAAAGGGTTTCGGTCATCCAGCTTTAAATaGGTATGCACAGAAAGTCGCAGATCTTTCTCTATT +
Preference number: 3 (lower is better)
Translates to: PTLKGFRSSSFK*VCTESRRSFSI
Trigger: AATAGAGAAAGATCTGCGACTTTCTGTGCATACTCATTTAAAGCTGGATGACCGAAACCCTTTCAAAGTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR GCA 72 bp CCTATTAGATGTGAATATACTGAAGCCCTGTTGCTCTaGAGTTTGACACCATTTAAATTCGTTTCCAGGATC +
Preference number: 3 (lower is better)
Translates to: PIRCEYTEALLL*SLTPFKFVSRI
Trigger: GATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTCAGTATATTCACATCTAATAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR-3UTR CAA 90 bp CCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATGATTTCAGTAACCTTTaGTACATAGTCCAGTGGTCT +
Preference number: 3 (lower is better)
Translates to: PSSNCPSSFSKNFSNGFNDFSNL*YIVQWS
Trigger: AGACCACTGGACTATGTACAAAAGGTTACTGAAATC...ATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR-3UTR CAA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGAAAACAACAGTCACATaGTGTTTGGACTCGTTCTCT +
Preference number: 3 (lower is better)
Translates to: EGQRGNNYIEISEMYILWKTTVT*CLDSFS
Trigger: AGAGAACGAGTCCAAACACAATGTGACTGTTGTTTT...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR TCA 72 bp GATGTGAATATACTGAAGCCCTGTTGCTCTGCAGTTTaGCACCATTTAAATTCGTTTCCAGGATCTTATTTC +
Preference number: 3 (lower is better)
Translates to: DVNILKPCCSAV*HHLNSFPGSYF
Trigger: GAAATAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTCAGTATATTCACATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR TCA 72 bp CAAATTCCTGTAGATAGACATCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGAGTTTTTCATCTTGAC +
Preference number: 3 (lower is better)
Translates to: QIPVDRHPVASE*DSWFVRVFHLD
Trigger: GTCAAGATGAAAAACTCTTACAAACCATGAATCTCACTCAGAAGCGACTGGATGTCTATCTACAGGAATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR TCA 72 bp CTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATATaGTTATCAATAATTTCATCCAGGGTGAGCAAAACT +
Preference number: 3 (lower is better)
Translates to: LLYIVQWSFSVI*LSIISSRVSKT
Trigger: AGTTTTGCTCACCCTGGATGAAATTATTGATAATCATATCACACTGAAAGACCACTGGACTATGTACAAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR TCA 72 bp GCCTTTAAGAACTGTAACATCTATTTTCCAGAGATGTaGCCCAGGAAACAATTCATCAATAGTTTATCCATT +
Preference number: 3 (lower is better)
Translates to: AFKNCNIYFPEM*PRKQFINSLSI
Trigger: AATGGATAAACTATTGATGAATTGTTTCCTGGGTCACATCTCTGGAAAATAGATGTTACAGTTCTTAAAGGC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR TCA 72 bp CTCTTTAGACAAAATAGATTCCATTTTCATCATCCATaGGCTCACAAAGACGTAGTAAGACTGTACATCTTT +
Preference number: 3 (lower is better)
Translates to: LFRQNRFHFHHP*AHKDVVRLYIF
Trigger: AAAGATGTACAGTCTTACTACGTCTTTGTGAGCTCATGGATGATGAAAATGGAATCTATTTTGTCTAAAGAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR CCA 72 bp ATTTCGGAGATGTATATTCTTTGGCCTTCGAAATTCTaGAGCAAAAACGTCTACAAGCATTTTGAAATATTC +
Preference number: 3 (lower is better)
Translates to: ISEMYILWPSKF*SKNVYKHFEIF
Trigger: GAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAATTTCGAAGGCCAAAGAATATACATCTCCGAAAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp CCATCCGTATCATTTCACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCAATGCTCTACAAAGTTaGGGGTCAGAGGGGGAACAA +
Preference number: 4 (lower is better)
Translates to: PSVSFHNRISRHSAVRQVNALQS*GSEGEQ
Trigger: TTGTTCCCCCTCTGACCCTCAACTTTGTAGAGCATT...GACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTGAAATGATACGGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAGTTGGACTTCGGCATaGATTTTCTGCGAGCCGTCG +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSWTSA*IFCEPS
Trigger: CGACGGCTCGCAGAAAATTCATGCCGAAGTCCAACT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTCCCTGTTCCAAAGTCTaGCTGGGAAGATGTGCCTCT +
Preference number: 4 (lower is better)
Translates to: VVLYRPGISFHPVIALLAPCSKV*LGRCAS
Trigger: AGAGGCACATCTTCCCAGTCAGACTTTGGAACAGGG...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp CCATCCGTATCATTTCACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCGAAGCCCTGTTGCTCTaGAGTTTGACACCATTTAAA +
Preference number: 4 (lower is better)
Translates to: PSVSFHNRISRHSAVRQVEALLL*SLTPFK
Trigger: TTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC...GACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTGAAATGATACGGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAGGGCAGCCAACTGGTaGACTACGTTCATCACCACT +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILRAANW*TTFITT
Trigger: AGTGGTGATGAACGTAGTCCACCAGTTGGCTGCCCT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCAGGGCAGCCAACTGGTaGACTACGTTCATCACCACT +
Preference number: 4 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSRAANW*TTFITT
Trigger: AGTGGTGATGAACGTAGTCCACCAGTTGGCTGCCCT...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
3UTR CAA 72 bp CATAGCATTACCAATCTGGCTGATGAGTTGCCTGAATaGATCAAGGTAGCTCTGTCCCTCAGGTGTTACTCC +
Preference number: 4 (lower is better)
Translates to: HSITNLADELPE*IKVALSLRCYS
Trigger: GGAGTAACACCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGTAATGCTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR CAA 72 bp TACATAGCCCATAGCATTACCAATCTGGCTGATGAGTaGCCTGAATTGATCAAGGTAGCTCTGTCCCTCAGG +
Preference number: 4 (lower is better)
Translates to: YIAHSITNLADE*PELIKVALSLR
Trigger: CCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGTAATGCTATGGGCTATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACCAAACATCTCCAATTaGGTCATCCAGAGCGTCCTC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILPNISN*VIQSVL
Trigger: GAGGACGCTCTGGATGACTCAATTGGAGATGTTTGG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTCTGACTGGGAAGATGTaGCTCTGTCATAACCAGTCC +
Preference number: 4 (lower is better)
Translates to: VVLYRPGISFHPVIALLALTGKM*LCHNQS
Trigger: GGACTGGTTATGACAGAGGCACATCTTCCCAGTCAG...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp ACACTTAGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTGATCAGCAGACACAGTaGTGTCAGACAGGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TLSAKETISRRCFVLGPFDQQTQ*CQTGLH
Trigger: ATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATC...AAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACTAAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp TTATCAATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCAGGGCAGCCAACTGGTaGACTACGTTCATCACCACT +
Preference number: 4 (lower is better)
Translates to: LSIISSRVSKTVSSSPKCRAANW*TTFITT
Trigger: AGTGGTGATGAACGTAGTCCACCAGTTGGCTGCCCT...GCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTATTGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATTCGTGTGTGATCACTaGGGACTGAATCCAAATGCC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILFVCDH*GLNPNA
Trigger: GGCATTTGGATTCAGTCCTCAGTGATCACACACGAA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp ATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCTCATACGCAGAATTTCGTGTGTaGTCACTGAGGACTGAATCC +
Preference number: 4 (lower is better)
Translates to: IISSRVSKTVSSSPKCSYAEFRV*SLRTES
Trigger: GGATTCAGTCCTCAGTGATCACACACGAAATTCTGC...GTATGAGCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTTCAAACTCCCGATACTaGTCCAAAAGCTTTAGAATG +
Preference number: 4 (lower is better)
Translates to: HNRISRHSAVRQVSIACFSNSRY*SKSFRM
Trigger: CATTCTAAAGCTTTTGGATCAGTATCGGGAGTTTGA...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTGAGATGTATATTCTTTaGCCTTCGAAATTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: HNRISRHSAVRQVSIACFEMYIL*PSKFWS
Trigger: GCTCCAGAATTTCGAAGGCCAAAGAATATACATCTC...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATAGTTGGACTTCGGCATaGATTTTCTGCGAGCCGTCG +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYSWTSA*IFCEPS
Trigger: CGACGGCTCGCAGAAAATTCATGCCGAAGTCCAACT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGCCAAACATCTCCAATTaGGTCATCCAGAGCGTCCTC +
Preference number: 4 (lower is better)
Translates to: EGQRGNNYIEISEMYILWPNISN*VIQSVL
Trigger: GAGGACGCTCTGGATGACTCAATTGGAGATGTTTGG...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCAGTCGCGCAAAGCACTaGACATGTAATGTAATCTGG +
Preference number: 4 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSSRAKH*TCNVIW
Trigger: CCAGATTACATTACATGTTCAGTGCTTTGCGCGACT...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACTTTCATGCCAACTTTaGAAGGGTTTCGGTCATCCA +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILLSCQL*KGFGHP
Trigger: TGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCCCTGTTCCAAAGTCTaGCTGGGAAGATGTGCCTCT +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYPCSKV*LGRCAS
Trigger: AGAGGCACATCTTCCCAGTCAGACTTTGGAACAGGG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGTGATCACTGAGGACTaGATCCAAATGCCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHVITED*IQMPCC
Trigger: GCAGCAAGGCATTTGGATTCAGTCCTCAGTGATCAC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp TGGACAGATTTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATAGTGATCACTGAGGACTaGATCCAAATGCCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: WTDFSNLLYIVQWSFSVIVITED*IQMPCC
Trigger: GCAGCAAGGCATTTGGATTCAGTCCTCAGTGATCAC...TATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGA +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILPVASE*DSWFVR
Trigger: TCTTACAAACCATGAATCTCACTCAGAAGCGACTGG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAAAACCCCACTCAAGTaGGGTAACAAACTTGCCATC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILKTPLK*GNKLAI
Trigger: GATGGCAAGTTTGTTACCTCACTTGAGTGGGGTTTT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAGTCGCCGTTGCTTTGTaGTTGGTCCATTTAGAGTGT +
Preference number: 4 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRVAVAL*LVHLEC
Trigger: ACACTCTAAATGGACCAAGCACAAAGCAACGGCGAC...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCTGACTGGGAAGATGTaGCTCTGTCATAACCAGTCC +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHLTGKM*LCHNQS
Trigger: GGACTGGTTATGACAGAGGCACATCTTCCCAGTCAG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTAGGACTGAATCCAAATaGCTTGCTGCTTTTAATGTT +
Preference number: 4 (lower is better)
Translates to: HNRISRHSAVRQVSIACFRTESK*LAAFNV
Trigger: AACATTAAAAGCAGCAAGGCATTTGGATTCAGTCCT...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAGCCGCAGTCTTGTCTaGTCTGAAGAAAATTCTTGC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSRSLV*SEENSC
Trigger: GCAAGAATTTTCTTCAGAGCAGACAAGACTGCGGCT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp ACACTTAGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGCCGCAGTCTTGTCTaGTCTGAAGAAAATTCTTGC +
Preference number: 4 (lower is better)
Translates to: TLSAKETISRRCFVLGPFSRSLV*SEENSC
Trigger: GCAAGAATTTTCTTCAGAGCAGACAAGACTGCGGCT...AAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACTAAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAGTTCCAAAGTCTGACTaGGAAGATGTGCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRVPKSD*EDVPLS
Trigger: TGACAGAGGCACATCTTCCCAGTCAGACTTTGGAAC...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGTATTTATCTTGGGCTaGCAAGTTACCCTGACCCTA +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILVFILG*QVTLTL
Trigger: TAGGGTCAGGGTAACTTGCCAGCCCAAGATAAATAC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTGTATTTATCTTGGGCTaGCAAGTTACCCTGACCCTA +
Preference number: 4 (lower is better)
Translates to: VVLYRPGISFHPVIALLAVFILG*QVTLTL
Trigger: TAGGGTCAGGGTAACTTGCCAGCCCAAGATAAATAC...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
3UTR CAA 72 bp TCTCACTATAAGTGGCCCAGTCATGAAGGGCTACAGTaGTTAGATTGTAGAAAGTCTTGTCTAGGTAGTGAG +
Preference number: 4 (lower is better)
Translates to: SHYKWPSHEGLQ*LDCRKSCLGSE
Trigger: CTCACTACCTAGACAAGACTTTCTACAATCTAACAACTGTAGCCCTTCATGACTGGGCCACTTATAGTGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATCATCCAGCTTTAAATaGGTATGCACAGAAAGTCGC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSSSFK*VCTESR
Trigger: GCGACTTTCTGTGCATACTCATTTAAAGCTGGATGA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGACTTTCATGCCAACTTTaGAAGGGTTTCGGTCATCCA +
Preference number: 4 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRLSCQL*KGFGHP
Trigger: TGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp CCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTTCGTGTGTGATCACTaGGGACTGAATCCAAATGCC +
Preference number: 4 (lower is better)
Translates to: PSSNCPSSFSKNFSNGFNFVCDH*GLNPNA
Trigger: GGCATTTGGATTCAGTCCTCAGTGATCACACACGAA...ATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTCGTCTACAAGCATTTTaGAATATTCTGTGCCTTCGG +
Preference number: 4 (lower is better)
Translates to: VVLYRPGISFHPVIALLARLQAF*NILCLR
Trigger: CCGAAGGCACAGAATATTTCAAAATGCTTGTAGACG...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACAATGCTCTACAAAGTTaGGGGTCAGAGGGGGAACAA +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHNALQS*GSEGEQ
Trigger: TTGTTCCCCCTCTGACCCTCAACTTTGTAGAGCATT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGCTGGAACCAGTGAAGTaGATCAAACTCCCGATACTG +
Preference number: 4 (lower is better)
Translates to: EGQRGNNYIEISEMYILWLEPVK*IKLPIL
Trigger: CAGTATCGGGAGTTTGATTCACTTCACTGGTTCCAG...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGACAGACTGGAACCAGTaGAGTGAATCAAACTCCCGA +
Preference number: 4 (lower is better)
Translates to: EGQRGNNYIEISEMYILWTDWNQ*SESNSR
Trigger: TCGGGAGTTTGATTCACTTCACTGGTTCCAGTCTGT...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATTCATCTTGACTGGCTaGCTGTACATTCTGTTGCTT +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILFILTG*LYILLL
Trigger: AAGCAACAGAATGTACAGTCAGCCAGTCAAGATGAA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGAGTGAAGAGTTTTTCATCTTaGCTGGCTGACTGTACATTC +
Preference number: 4 (lower is better)
Translates to: SAKETISRRCFVLGPFRVKSFSS*LADCTF
Trigger: GAATGTACAGTCAGCCAGTCAAGATGAAAAACTCTT...CACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp TTATCAATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGA +
Preference number: 4 (lower is better)
Translates to: LSIISSRVSKTVSSSPKCPVASE*DSWFVR
Trigger: TCTTACAAACCATGAATCTCACTCAGAAGCGACTGG...GCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTATTGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp ATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCTCATACCAGGGAGTCAGCATGTaGACTCTATCTAGTATTGAT +
Preference number: 4 (lower is better)
Translates to: IISSRVSKTVSSSPKCSYQGVSM*TLSSID
Trigger: ATCAATACTAGATAGAGTTCACATGCTGACTCCCTG...GTATGAGCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGTCGCCGTTGCTTTGTaGTTGGTCCATTTAGAGTGT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHVAVAL*LVHLEC
Trigger: ACACTCTAAATGGACCAAGCACAAAGCAACGGCGAC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAACAATAAGTCGCCGTTaGTTTGTGCTTGGTCCATTT +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILTISRR*FVLGPF
Trigger: AAATGGACCAAGCACAAAGCAACGGCGACTTATTGT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGATCAGCAGACACAGTaGTGTCAGACAGGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYDQQTQ*CQTGLH
Trigger: ATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCAGCAGTTCTCCCAAGTaGTCATACATAGTCTGTCAA +
Preference number: 4 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSSSSPK*SYIVCQ
Trigger: TTGACAGACTATGTATGAGCACTTGGGAGAACTGCT...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CCA 90 bp ATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCTCATACTTCTGTCTAGCAGTTTaGCAGCTGCTGGTATTTTCT +
Preference number: 4 (lower is better)
Translates to: IISSRVSKTVSSSPKCSYFCLAV*QLLVFS
Trigger: AGAAAATACCAGCAGCTGCCAAACTGCTAGACAGAA...GTATGAGCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTCATGACTACTTGAAGTaGAAAGAGTTCTTCATCTTT +
Preference number: 4 (lower is better)
Translates to: HNRISRHSAVRQVSIACFHDYLK*KEFFIF
Trigger: AAAGATGAAGAACTCTTTCCACTTCAAGTAGTCATG...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGTTCCAAAGTCTGACTaGGAAGATGTGCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHVPKSD*EDVPLS
Trigger: TGACAGAGGCACATCTTCCCAGTCAGACTTTGGAAC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAATAAATCTCCCCATTTaGATTTGGCAATCACCTTCC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILINLPI*IWQSPS
Trigger: GGAAGGTGATTGCCAAATTCAAATGGGGAGATTTAT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGTGCAATCTTGTTACTaGTATAGAGGGCAGCCAACT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHVQSCY*YRGQPT
Trigger: AGTTGGCTGCCCTCTATATCAGTAACAAGATTGCAC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTATGCTCTATTGCCTTaGGAAGTTCAACAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHYALLP*EVQQAC
Trigger: GCAGGCTTGTTGAACTTCTCAAGGCAATAGAGCATA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGCCATGTGTTCGAATTaGATTAGCAATATGCCGAAT +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILAMCSN*ISNMPN
Trigger: ATTCGGCATATTGCTAATTCAATTCGAACACATGGC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGCATTGCTGCTACAATaGAGACCACCAGATCTTATC +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHALLLQ*RPPDLI
Trigger: GATAAGATCTGGTGGTCTTCATTGTAGCAGCAATGC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAGCAGAATTTCGTGTGTaGTCACTGAGGACTGAATCC +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQAEFRV*SLRTES
Trigger: GGATTCAGTCCTCAGTGATCACACACGAAATTCTGC...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAACTGGAACCAGTGAAGTaGATCAAACTCCCGATACTG +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQLEPVK*IKLPIL
Trigger: CAGTATCGGGAGTTTGATTCACTTCACTGGTTCCAG...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATACAGACTGGAACCAGTaGAGTGAATCAAACTCCCGA +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYTDWNQ*SESNSR
Trigger: TCGGGAGTTTGATTCACTTCACTGGTTCCAGTCTGT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACACATCCAGTCGCTTCTaGGTGAGATTCATGGTTTGT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHTSSRF*VRFMVC
Trigger: ACAAACCATGAATCTCACTCAGAAGCGACTGGATGT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGACATCCAGTCGCTTCTaGGTGAGATTCATGGTTTGT +
Preference number: 4 (lower is better)
Translates to: EGQRGNNYIEISEMYILWTSSRF*VRFMVC
Trigger: ACAAACCATGAATCTCACTCAGAAGCGACTGGATGT...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCATATTTTCCAGAGATGTaGCCCAGGAAACAATTCATC +
Preference number: 4 (lower is better)
Translates to: VLYRPGISFHPVIALLASYFPEM*PRKQFI
Trigger: GATGAATTGTTTCCTGGGTCACATCTCTGGAAAATA...TGAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp TCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTATTCCATCCAGTAATTaGCCTTCTAGCTTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: SFHPVIALLASARTFQMAIPSSN*PSSFSK
Trigger: CTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAAT...AGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR GCA 90 bp ATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCTCATACAATCAGCCACAACCATaGTTCTCCTGTAGAACATAT +
Preference number: 4 (lower is better)
Translates to: IISSRVSKTVSSSPKCSYNQPQP*FSCRTY
Trigger: ATATGTTCTACAGGAGAAGCATGGTTGTGGCTGATT...GTATGAGCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAACAATAAGTCGCCGTTaGTTTGTGCTTGGTCCATTT +
Preference number: 4 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRTISRR*FVLGPF
Trigger: AAATGGACCAAGCACAAAGCAACGGCGACTTATTGT...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp CAACATACTTGTCTCTCTGGTCAATTTCAGAAGGTTCTCCAAGTTTGGCTTCTATCTAAATGCCTTGCATaGATCATAGCAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: QHTCLSGQFQKVLQVWLLSKCLA*IIAGTQ
Trigger: CTGTGTACCTGCTATGATGCATGCAAGGCATTTAGA...TAGAAGCCAAACTTGGAGAACCTTCTGAAATTGACCAGAGAGACAAGTATGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGACTGTACATTCTGTTaGTTAGCAACTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILDCTFC*LATALI
Trigger: GATAAGAGCAGTTGCTAAGCAACAGAATGTACAGTC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp CAACATACTTGTCTCTCTGGTCAATTTCAGAAGGTTCTCCAAGTTTGGCTTCTAAGCAGTTCTCCCAAGTaGTCATACATAGTCTGTCAA +
Preference number: 4 (lower is better)
Translates to: QHTCLSGQFQKVLQVWLLSSSPK*SYIVCQ
Trigger: TTGACAGACTATGTATGAGCACTTGGGAGAACTGCT...TAGAAGCCAAACTTGGAGAACCTTCTGAAATTGACCAGAGAGACAAGTATGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp TGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCTGTTCTATACAGGCCTaGAATATCATTCCATCCAGT +
Preference number: 4 (lower is better)
Translates to: CSIQAWNIIPSSNCPSSFCSIQA*NIIPSS
Trigger: ACTGGATGGAATGATATTCCAGGCCTGTATAGAACA...GAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CCA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCCAGTCACATTGTGTTTaGACTCGTTCTCTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSQSHCV*TRSLSS
Trigger: TGAACTTAGAGAACGAGTCCAAACACAATGTGACTG...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp CATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTGTGCAATCTTGTTACTaGTATAGAGGGCAGCCAACT +
Preference number: 4 (lower is better)
Translates to: HPVIALLASARTFQMALIVQSCY*YRGQPT
Trigger: AGTTGGCTGCCCTCTATATCAGTAACAAGATTGCAC...AATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp ATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGTGCAATCTTGTTACTaGTATAGAGGGCAGCCAACT +
Preference number: 4 (lower is better)
Translates to: ISFHPVIALLASARTFQMVQSCY*YRGQPT
Trigger: AGTTGGCTGCCCTCTATATCAGTAACAAGATTGCAC...CATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCCAGATACTCCTCCATTaGGAGAATCAAATTGTTGTT +
Preference number: 4 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSQILLH*ENQIVV
Trigger: AACAACAATTTGATTCTCTCAATGGAGGAGTATCTG...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGCACAATGCCTTAACTaGGGTTTTGGTCATTGGCTT +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYAQCLN*GFGHWL
Trigger: AAGCCAATGACCAAAACCTCAGTTAAGGCATTGTGC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp CATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTGCACAATGCCTTAACTaGGGTTTTGGTCATTGGCTT +
Preference number: 4 (lower is better)
Translates to: HPVIALLASARTFQMALIAQCLN*GFGHWL
Trigger: AAGCCAATGACCAAAACCTCAGTTAAGGCATTGTGC...AATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTATGCTCTATTGCCTTaGGAAGTTCAACAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYYALLP*EVQQAC
Trigger: GCAGGCTTGTTGAACTTCTCAAGGCAATAGAGCATA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATAGTCGCGCAAAGCACTaGACATGTAATGTAATCTGG +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYSRAKH*TCNVIW
Trigger: CCAGATTACATTACATGTTCAGTGCTTTGCGCGACT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp CATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTGCATTGCTGCTACAATaGAGACCACCAGATCTTATC +
Preference number: 4 (lower is better)
Translates to: HPVIALLASARTFQMALIALLLQ*RPPDLI
Trigger: GATAAGATCTGGTGGTCTTCATTGTAGCAGCAATGC...AATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAACAGTCTTGTCTGCTCTaGAGAAAATTCTTGCACTGC +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQQSCLL*RKFLHC
Trigger: GCAGTGCAAGAATTTTCTTCAGAGCAGACAAGACTG...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp CATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTCAGTCTTGTCTGCTCTaGAGAAAATTCTTGCACTGC +
Preference number: 4 (lower is better)
Translates to: HPVIALLASARTFQMALIQSCLL*RKFLHC
Trigger: GCAGTGCAAGAATTTTCTTCAGAGCAGACAAGACTG...AATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATCATCATATGTGCAGTaGATACCATCCGTATCATTT +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSSYVQ*IPSVSF
Trigger: AAATGATACGGATGGTATTCACTGCACATATGATGA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATAAAACCCCACTCAAGTaGGGTAACAAACTTGCCATC +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYKTPLK*GNKLAI
Trigger: GATGGCAAGTTTGTTACCTCACTTGAGTGGGGTTTT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp TGGACAGATTTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATAATTCCATCCAGTAATTaGCCTTCTAGCTTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: WTDFSNLLYIVQWSFSVIIPSSN*PSSFSK
Trigger: CTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAAT...TATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR GCA 90 bp GTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCAATGTTTTCATTTGTGTaGCAACACTTAGTGCCAAAG +
Preference number: 4 (lower is better)
Translates to: VLYRPGISFHPVIALLASMFSFV*QHLVPK
Trigger: CTTTGGCACTAAGTGTTGGCACACAAATGAAAACAT...TGAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGCTGTTGCTTAGCAACTaGTCTTATCTCCTTCAGGTA +
Preference number: 4 (lower is better)
Translates to: EGQRGNNYIEISEMYILWLLLSN*SYLLQV
Trigger: TACCTGAAGGAGATAAGAGCAGTTGCTAAGCAACAG...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp CAACATACTTGTCTCTCTGGTCAATTTCAGAAGGTTCTCCAAGTTTGGCTTCTAGACTGTACATTCTGTTaGTTAGCAACTGCTCTTATC +
Preference number: 4 (lower is better)
Translates to: QHTCLSGQFQKVLQVWLLDCTFC*LATALI
Trigger: GATAAGAGCAGTTGCTAAGCAACAGAATGTACAGTC...TAGAAGCCAAACTTGGAGAACCTTCTGAAATTGACCAGAGAGACAAGTATGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCAGAAAATTCTTGCACTaGTCAGTGAGAAATACAGCA +
Preference number: 4 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSRKFLH*SVRNTA
Trigger: TGCTGTATTTCTCACTGAGCAGTGCAAGAATTTTCT...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGAAGCCCTGTTGCTCTaGAGTTTGACACCATTTAAA +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHEALLL*SLTPFK
Trigger: TTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCATTGGCTTTTGCATaGACATGTAGAGATTCATTG +
Preference number: 4 (lower is better)
Translates to: VVLYRPGISFHPVIALLASLAFA*TCRDSL
Trigger: CAATGAATCTCTACATGTCCATGCAAAAGCCAATGA...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAATCATCTCACTATAAGTaGCCCAGTCATGAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQSSHYK*PSHEGL
Trigger: TAGCCCTTCATGACTGGGCCACTTATAGTGAGATGA...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp ATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGTCATCTCACTATAAGTaGCCCAGTCATGAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: ISFHPVIALLASARTFQMSSHYK*PSHEGL
Trigger: TAGCCCTTCATGACTGGGCCACTTATAGTGAGATGA...CATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTGGCCTTCGAAATTCTaGAGCAAAAACGTCTACAAG +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHWPSKF*SKNVYK
Trigger: CTTGTAGACGTTTTTGCTCCAGAATTTCGAAGGCCA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGTGGCCTTCGAAATTCTaGAGCAAAAACGTCTACAAG +
Preference number: 4 (lower is better)
Translates to: EGQRGNNYIEISEMYILWWPSKF*SKNVYK
Trigger: CTTGTAGACGTTTTTGCTCCAGAATTTCGAAGGCCA...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp GACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTAGTTTCTTCTTCCTTCAAACTAACAGCTTGCTaGGCACAAAATTTACTCAAA +
Preference number: 4 (lower is better)
Translates to: DTVLSDRSPLLVLVSSSFKLTAC*AQNLLK
Trigger: TTTGAGTAAATTTTGTGCCCAGCAAGCTGTTAGTTT...GAAGGAAGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp TGGACAGATTTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATAATAAATCTCCCCATTTaGATTTGGCAATCACCTTCC +
Preference number: 4 (lower is better)
Translates to: WTDFSNLLYIVQWSFSVIINLPI*IWQSPS
Trigger: GGAAGGTGATTGCCAAATTCAAATGGGGAGATTTAT...TATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp TCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTCTGAATTCCAAATTTTaGAGGATTGTGATGGACAGA +
Preference number: 4 (lower is better)
Translates to: SFHPVIALLASARTFQMALNSKF*RIVMDR
Trigger: TCTGTCCATCACAATCCTTCAAAATTTGGAATTCAG...AGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGACTGAATTCCAAATTTTaGAGGATTGTGATGGACAGA +
Preference number: 4 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRLNSKF*RIVMDR
Trigger: TCTGTCCATCACAATCCTTCAAAATTTGGAATTCAG...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp TTATCAATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCCAGATACTCCTCCATTaGGAGAATCAAATTGTTGTT +
Preference number: 4 (lower is better)
Translates to: LSIISSRVSKTVSSSPKCQILLH*ENQIVV
Trigger: AACAACAATTTGATTCTCTCAATGGAGGAGTATCTG...GCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTATTGATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp TGGACAGATTTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATACATTTTCATCATCCATaGGCTCACAAAGACGTAGTA +
Preference number: 4 (lower is better)
Translates to: WTDFSNLLYIVQWSFSVIHFHHP*AHKDVV
Trigger: TACTACGTCTTTGTGAGCTCATGGATGATGAAAATG...TATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp ATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGTCATCCAGCTTTAAATaGGTATGCACAGAAAGTCGC +
Preference number: 4 (lower is better)
Translates to: ISFHPVIALLASARTFQMSSSFK*VCTESR
Trigger: GCGACTTTCTGTGCATACTCATTTAAAGCTGGATGA...CATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCGTCTACAAGCATTTTaGAATATTCTGTGCCTTCGG +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYRLQAF*NILCLR
Trigger: CCGAAGGCACAGAATATTTCAAAATGCTTGTAGACG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAATTCATCTTGACTGGCTaGCTGTACATTCTGTTGCTT +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQFILTG*LYILLL
Trigger: AAGCAACAGAATGTACAGTCAGCCAGTCAAGATGAA...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACAAGAGTTTTTCATCTTaGCTGGCTGACTGTACATTC +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHKSFSS*LADCTF
Trigger: GAATGTACAGTCAGCCAGTCAAGATGAAAAACTCTT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCGAGGTGATAGTTTATaGATCTGGATTTGCCCTTTT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHRGDSL*IWICPF
Trigger: AAAAGGGCAAATCCAGATTCATAAACTATCACCTCG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCAGGGAGTCAGCATGTaGACTCTATCTAGTATTGAT +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYQGVSM*TLSSID
Trigger: ATCAATACTAGATAGAGTTCACATGCTGACTCCCTG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATATTCCATCCAGTAATTaGCCTTCTAGCTTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYIPSSN*PSSFSK
Trigger: CTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAAT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTGGTACTAATACTATATaGATACAAGAAGCCCTGTAT +
Preference number: 4 (lower is better)
Translates to: VVLYRPGISFHPVIALLAGTNTI*IQEALY
Trigger: ATACAGGGCTTCTTGTATGCATATAGTATTAGTACC...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTCTAAATGCCTTGCATaGATCATAGCAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYSKCLA*IIAGTQ
Trigger: CTGTGTACCTGCTATGATGCATGCAAGGCATTTAGA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCTGTTGCTTAGCAACTaGTCTTATCTCCTTCAGGTA +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYLLLSN*SYLLQV
Trigger: TACCTGAAGGAGATAAGAGCAGTTGCTAAGCAACAG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCATACATAAAACACTTGTaGCTCACCTCTAGTATCAAA +
Preference number: 4 (lower is better)
Translates to: VLYRPGISFHPVIALLASYIKHL*LTSSIK
Trigger: TTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTA...TGAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR GCA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAATTAATTATGCAGCATaGTTTAGGGCCATTTCTACA +
Preference number: 4 (lower is better)
Translates to: EALLLCSLTPFKFVSRILINYAA*FRAIST
Trigger: TGTAGAAATGGCCCTAAAGCATGCTGCATAATTAAT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAATTCTGTCTAGCAGTTTaGCAGCTGCTGGTATTTTCT +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQFCLAV*QLLVFS
Trigger: AGAAAATACCAGCAGCTGCCAAACTGCTAGACAGAA...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACATAGCATTACCAATCTaGCTGATGAGTTGCCTGAAT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHIALPI*LMSCLN
Trigger: ATTCAGGCAACTCATCAGCCAGATTGGTAATGCTAT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp CCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATATAGCATTACCAATCTaGCTGATGAGTTGCCTGAAT +
Preference number: 4 (lower is better)
Translates to: PSSNCPSSFSKNFSNGFNIALPI*LMSCLN
Trigger: ATTCAGGCAACTCATCAGCCAGATTGGTAATGCTAT...ATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGAGATGTATATTCTTTaGCCTTCGAAATTCTGGAGC +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHEMYIL*PSKFWS
Trigger: GCTCCAGAATTTCGAAGGCCAAAGAATATACATCTC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAGTTTTTCATCTTGACTaGCTGACTGTACATTCTGTT +
Preference number: 4 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRVFHLD*LTVHSV
Trigger: AACAGAATGTACAGTCAGCCAGTCAAGATGAAAAAC...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR TCA 90 bp CATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTATAAATCTCCCCATTTaGATTTGGCAATCACCTTCC +
Preference number: 4 (lower is better)
Translates to: HPVIALLASARTFQMALIINLPI*IWQSPS
Trigger: GGAAGGTGATTGCCAAATTCAAATGGGGAGATTTAT...AATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCTGAATTCCAAATTTTaGAGGATTGTGATGGACAGA +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHLNSKF*RIVMDR
Trigger: TCTGTCCATCACAATCCTTCAAAATTTGGAATTCAG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAACATTTTCATCATCCATaGGCTCACAAAGACGTAGTA +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQHFHHP*AHKDVV
Trigger: TACTACGTCTTTGTGAGCTCATGGATGATGAAAATG...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTCAAACTCCCGATACTaGTCCAAAAGCTTTAGAATG +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYSNSRY*SKSFRM
Trigger: CATTCTAAAGCTTTTGGATCAGTATCGGGAGTTTGA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTCATCATATGTGCAGTaGATACCATCCGTATCATTT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHSSYVQ*IPSVSF
Trigger: AAATGATACGGATGGTATTCACTGCACATATGATGA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAAATCAGCCACAACCATaGTTCTCCTGTAGAACATAT +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQNQPQP*FSCRTY
Trigger: ATATGTTCTACAGGAGAAGCATGGTTGTGGCTGATT...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACAGGACTGAATCCAAATaGCTTGCTGCTTTTAATGTT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHRTESK*LAAFNV
Trigger: AACATTAAAAGCAGCAAGGCATTTGGATTCAGTCCT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTGTTCTATACAGGCCTaGAATATCATTCCATCCAGT +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYCSIQA*NIIPSS
Trigger: ACTGGATGGAATGATATTCCAGGCCTGTATAGAACA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTCATTGGCTTTTGCATaGACATGTAGAGATTCATTG +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHSLAFA*TCRDSL
Trigger: CAATGAATCTCTACATGTCCATGCAAAAGCCAATGA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAACAGTCACATTGTGTTTaGACTCGTTCTCTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQQSHCV*TRSLSS
Trigger: TGAACTTAGAGAACGAGTCCAAACACAATGTGACTG...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp TTATCAATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCACATGTAATGTAATCTaGCTGCATCAACAGCATTTT +
Preference number: 4 (lower is better)
Translates to: LSIISSRVSKTVSSSPKCTCNVI*LHQQHF
Trigger: AAAATGCTGTTGATGCAGCCAGATTACATTACATGT...GCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTATTGATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGTTTTTCATCTTGACTaGCTGACTGTACATTCTGTT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHVFHLD*LTVHSV
Trigger: AACAGAATGTACAGTCAGCCAGTCAAGATGAAAAAC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
3UTR CAA 72 bp AGATGTGAATATACTGAAGCCCTGTTGCTCTGCAGTTaGACACCATTTAAATTCGTTTCCAGGATCTTATTT +
Preference number: 4 (lower is better)
Translates to: RCEYTEALLLCS*TPFKFVSRILF
Trigger: AAATAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTCAGTATATTCACATCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAATGTTTTCAGTCTTTATaGGTTCCAAAAGAGAGGACT +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQCFQSL*VPKERT
Trigger: AGTCCTCTCTTTTGGAACTCATAAAGACTGAAAACA...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR TCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAACAGATACTCCTCCATTaGGAGAATCAAATTGTTGTT +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQQILLH*ENQIVV
Trigger: AACAACAATTTGATTCTCTCAATGGAGGAGTATCTG...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAATGTTTTCATTTGTGTaGCAACACTTAGTGCCAAAG +
Preference number: 4 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQMFSFV*QHLVPK
Trigger: CTTTGGCACTAAGTGTTGGCACACAAATGAAAACAT...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATAGAAAATTCTTGCACTaGTCAGTGAGAAATACAGCA +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYRKFLH*SVRNTA
Trigger: TGCTGTATTTCTCACTGAGCAGTGCAAGAATTTTCT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp CCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATATTAATTATGCAGCATaGTTTAGGGCCATTTCTACA +
Preference number: 4 (lower is better)
Translates to: PSSNCPSSFSKNFSNGFNINYAA*FRAIST
Trigger: TGTAGAAATGGCCCTAAAGCATGCTGCATAATTAAT...ATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCATGACTACTTGAAGTaGAAAGAGTTCTTCATCTTT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHHDYLK*KEFFIF
Trigger: AAAGATGAAGAACTCTTTCCACTTCAAGTAGTCATG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CCA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACACATGTAATGTAATCTaGCTGCATCAACAGCATTTT +
Preference number: 4 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHTCNVI*LHQQHF
Trigger: AAAATGCTGTTGATGCAGCCAGATTACATTACATGT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR GCA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTACATAAAACACTTGTaGCTCACCTCTAGTATCAAA +
Preference number: 4 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYYIKHL*LTSSIK
Trigger: TTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp CCATCCGTATCATTTCACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCGAATGCTCTACAAAGTaGAGGGTCAGAGGGGGAACA +
Preference number: 5 (lower is better)
Translates to: PSVSFHNRISRHSAVRQVECSTK*RVRGGT
Trigger: TGTTCCCCCTCTGACCCTCAACTTTGTAGAGCATTC...GACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTGAAATGATACGGATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS GCA 90 bp CACCTAGAGTTCAAGATCCATGAGTACAGCCTTTGTCTTCTTCACTaGTCCATCCCTAGAGCCAACATGTCCAATCTGGCTGATGAGTTG +
Preference number: 5 (lower is better)
Translates to: HLEFKIHEYSLCLLH*SIPRANMSNLADEL
Trigger: CAACTCATCAGCCAGATTGGACATGTTGGCTCTAGGGATGGAGCAGTGAAGAAGACAAAGGCTGTACTCATGGATCTTGAACTCTAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS-3UTR CAA 90 bp CACAACAGGATCAGCAGACACAGTGCTGTCAGACAGGTCTCCATTGCTTGTTTTCATCATCTAAATAAATaGGGAAGACAGCTCGATGCC +
Preference number: 5 (lower is better)
Translates to: HNRISRHSAVRQVSIACFHHLNK*GRQLDA
Trigger: GGCATCGAGCTGTCTTCCCAATTTATTTAGATGATG...AAAACAAGCAATGGAGACCTGTCTGACAGCACTGTGTCTGCTGATCCTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTATACTGAAGCCCTGTaGCTCTGCAGTTTGACACCA +
Preference number: 5 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSYTEAL*LCSLTP
Trigger: TGGTGTCAAACTGCAGAGCAACAGGGCTTCAGTATA...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS TCA 90 bp TTAGGCTCCTCTCTACCTGTAGATAGACATCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGAGTTTTTCATCTTGACTGGCTGACT +
Preference number: 5 (lower is better)
Translates to: LGSSLPVDRHPVASE*DSWFVRVFHLDWLT
Trigger: AGTCAGCCAGTCAAGATGAAAAACTCTTACAAACCATGAATCTCACTCAGAAGCGACTGGATGTCTATCTACAGGTAGAGAGGAGCCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550036.1
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTATCTCCCCATTTGAATTaGGCAATCACCTTCCACCAT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILSPHLN*AITFHH
Trigger: ATGGTGGAAGGTGATTGCCAAATTCAAATGGGGAGA...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCTCCCCATTTGAATTaGGCAATCACCTTCCACCAT +
Preference number: 5 (lower is better)
Translates to: VVLYRPGISFHPVIALLASPHLN*AITFHH
Trigger: ATGGTGGAAGGTGATTGCCAAATTCAAATGGGGAGA...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACTGAGGTTTTGGTCATaGGCTTTTGCATGGACATGT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILLRFWS*AFAWTC
Trigger: ACATGTCCATGCAAAAGCCAATGACCAAAACCTCAG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp ACACTTAGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTGCCGTTGCTTTGTGCTaGGTCCATTTAGAGTGTTTT +
Preference number: 5 (lower is better)
Translates to: TLSAKETISRRCFVLGPFAVALC*VHLECF
Trigger: AAAACACTCTAAATGGACCAAGCACAAAGCAACGGC...AAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACTAAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAACAATAAGTCGCCGTaGCTTTGTGCTTGGTCCATT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILNNKSP*LCAWSI
Trigger: AATGGACCAAGCACAAAGCAACGGCGACTTATTGTT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGAATGCTCTACAAAGTaGAGGGTCAGAGGGGGAACA +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHECSTK*RVRGGT
Trigger: TGTTCCCCCTCTGACCCTCAACTTTGTAGAGCATTC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS TCA 90 bp GACATTAAGAAGTCATGGATATCAAATGGTAAGTCAAAGCAGATGTaGCTCTTAGGCTCCTCTCTACCTGTAGATAGACATCCAGTCGCT +
Preference number: 5 (lower is better)
Translates to: DIKKSWISNGKSKQM*LLGSSLPVDRHPVA
Trigger: AGCGACTGGATGTCTATCTACAGGTAGAGAGGAGCCTAAGAGTCACATCTGCTTTGACTTACCATTTGATATCCATGACTTCTTAATGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550036.1
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCCCAAACATCTCCAATaGAGTCATCCAGAGCGTCCT +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYPKHLQ*SHPERP
Trigger: AGGACGCTCTGGATGACTCAATTGGAGATGTTTGGG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGAGTGGAGAGAATCAAATTGTaGTTCTATACAGGCCTGGAA +
Preference number: 5 (lower is better)
Translates to: SAKETISRRCFVLGPFRVERIKL*FYTGLE
Trigger: TTCCAGGCCTGTATAGAACAACAATTTGATTCTCTC...CACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAATATGCTCTATTGCCTaGAGAAGTTCAACAAGCCTG +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILICSIA*RSSTSL
Trigger: CAGGCTTGTTGAACTTCTCAAGGCAATAGAGCATAT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACATCATCTAAATAAATaGGGAAGACAGCTCGATGCC +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILHHLNK*GRQLDA
Trigger: GGCATCGAGCTGTCTTCCCAATTTATTTAGATGATG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TGGACAGATTTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATAGATGAGTTGCCTGAATaGATCAAGGTAGCTCTGTCC +
Preference number: 5 (lower is better)
Translates to: WTDFSNLLYIVQWSFSVIDELPE*IKVALS
Trigger: GGACAGAGCTACCTTGATCAATTCAGGCAACTCATC...TATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAATCTGGCTGATGAGTaGCCTGAATTGATCAAGGTA +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILNLADE*PELIKV
Trigger: TACCTTGATCAATTCAGGCAACTCATCAGCCAGATT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGAGTGATTAAAGTATTTATCTaGGGCTGGCAAGTTACCCTG +
Preference number: 5 (lower is better)
Translates to: SAKETISRRCFVLGPFRVIKVFI*GWQVTL
Trigger: CAGGGTAACTTGCCAGCCCAAGATAAATACTTTAAT...CACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTATACTGAAGCCCTGTaGCTCTGCAGTTTGACACCA +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHYTEAL*LCSLTP
Trigger: TGGTGTCAAACTGCAGAGCAACAGGGCTTCAGTATA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGCTATAGGATCAAGATaGAAATCCCAAACATCTCCA +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILAIGSR*KSQTSP
Trigger: TGGAGATGTTTGGGATTTCAATCTTGATCCTATAGC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TGTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCCCTGAATTCCAAATTTaGAAGGATTGTGATGGACAG +
Preference number: 5 (lower is better)
Translates to: CCSIQAWNIIPSSNCPSSPEFQI*KDCDGQ
Trigger: CTGTCCATCACAATCCTTCAAAATTTGGAATTCAGG...GCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CAA 90 bp AGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTAGAGTGATTGAGAGAATCAAATaGTTGTTCTATACAGGCCTG +
Preference number: 5 (lower is better)
Translates to: SAKETISRRCFVLGPFRVIERIK*LFYTGL
Trigger: CAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT...CACTCTAAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GTTGTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTGAAGGTTCTCCAAGTTaGGCTTCTACATTTGCAAAA +
Preference number: 5 (lower is better)
Translates to: VVLYRPGISFHPVIALLAEGSPS*ASTFAK
Trigger: TTTTGCAAATGTAGAAGCCAAACTTGGAGAACCTTC...AGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGGGTCAGAGGGGGAACAATTATATAGAAATTTCGGAGATGTATATTCTTTGGCTGAGGTTTTGGTCATaGGCTTTTGCATGGACATGT +
Preference number: 5 (lower is better)
Translates to: EGQRGNNYIEISEMYILWLRFWS*AFAWTC
Trigger: ACATGTCCATGCAAAAGCCAATGACCAAAACCTCAG...CCAAAGAATATACATCTCCGAAATTTCTATATAATTGTTCCCCCTCTGACCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGCCTTAACTGAGGTTTaGGTCATTGGCTTTTGCATG +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHALTEV*VIGFCM
Trigger: CATGCAAAAGCCAATGACCAAAACCTCAGTTAAGGC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAATATGCTCTATTGCCTaGAGAAGTTCAACAAGCCTG +
Preference number: 5 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRICSIA*RSSTSL
Trigger: CAGGCTTGTTGAACTTCTCAAGGCAATAGAGCATAT...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACAACAATAAGTCGCCGTaGCTTTGTGCTTGGTCCATT +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHNNKSP*LCAWSI
Trigger: AATGGACCAAGCACAAAGCAACGGCGACTTATTGTT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAAAAACAACAGTCACATaGTGTTTGGACTCGTTCTCT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILKTTVT*CLDSFS
Trigger: AGAGAACGAGTCCAAACACAATGTGACTGTTGTTTT...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTCTTTCATGCCAACTTaGAAAGGGTTTCGGTCATCC +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHSFMPT*KGFRSS
Trigger: GGATGACCGAAACCCTTTCAAAGTTGGCATGAAAGA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACATGAAGGGCTACAGTaGTTAGATTGTAGAAAGTCT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILHEGLQ*LDCRKS
Trigger: AGACTTTCTACAATCTAACAACTGTAGCCCTTCATG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAGATGAGTTGCCTGAATaGATCAAGGTAGCTCTGTCC +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQDELPE*IKVALS
Trigger: GGACAGAGCTACCTTGATCAATTCAGGCAACTCATC...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp ACACTTAGTGCCAAAGAAACAATAAGTCGCCGTTGCTTTGTGCTTGGTCCATTTTCAGACAGGTCTCCATaGCTTGTTTTAGTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: TLSAKETISRRCFVLGPFSDRSP*LVLVSS
Trigger: AGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGA...AAATGGACCAAGCACAAAGCAACGGCGACTTATTGTTTCTTTGGCACTAAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGATCAAATAGAAACATCTaGTACCCTCAAGTCCAGGCA +
Preference number: 5 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRSNRNI*YPQVQA
Trigger: TGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGA...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS TCA 90 bp GAAGAAAATTCTTGCACTGTAGATAGACATCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGAGTTTTTCATCTTGACTGGCTGACT +
Preference number: 5 (lower is better)
Translates to: EENSCTVDRHPVASE*DSWFVRVFHLDWLT
Trigger: AGTCAGCCAGTCAAGATGAAAAACTCTTACAAACCATGAATCTCACTCAGAAGCGACTGGATGTCTATCTACAGTGCAAGAATTTTCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000547171.1
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACCCATAATTCTTAAGTaGGACTTCGGCATGAATTTT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILPIILK*DFGMNF
Trigger: AAAATTCATGCCGAAGTCCAACTTAAGAATTATGGG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCTCAATTCTTCTCAGTaGAGAGGTATACTCCTCAAG +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHLNSSQ*RGILLK
Trigger: CTTGAGGAGTATACCTCTCAACTGAGAAGAATTGAG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TTCTGGAGCAAAAACGTCTACAAGCATTTTGAAATATTCTGTGCCTTCGGCAGAGCTATAGGATCAAGATaGAAATCCCAAACATCTCCA +
Preference number: 5 (lower is better)
Translates to: FWSKNVYKHFEIFCAFGRAIGSR*KSQTSP
Trigger: TGGAGATGTTTGGGATTTCAATCTTGATCCTATAGC...TCTGCCGAAGGCACAGAATATTTCAAAATGCTTGTAGACGTTTTTGCTCCAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTCTCCCCATTTGAATTaGGCAATCACCTTCCACCAT +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYSPHLN*AITFHH
Trigger: ATGGTGGAAGGTGATTGCCAAATTCAAATGGGGAGA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GTTCTATACAGGCCTGGAATATCATTCCATCCAGTAATTGCCCTTCTAGCTTCAATTGAGAGAATCAAATaGTTGTTCTATACAGGCCTG +
Preference number: 5 (lower is better)
Translates to: VLYRPGISFHPVIALLASIERIK*LFYTGL
Trigger: CAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT...TGAAGCTAGAAGGGCAATTACTGGATGGAATGATATTCCAGGCCTGTATAGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CAA 90 bp ATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCTCATACACAGATACTCCTCCATaGAGAGAATCAAATTGTTGT +
Preference number: 5 (lower is better)
Translates to: IISSRVSKTVSSSPKCSYTDTPP*RESNCC
Trigger: ACAACAATTTGATTCTCTCAATGGAGGAGTATCTGT...GTATGAGCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTAGTTTGGCTTCTACATTaGCAAAAATTGACCGAATAC +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILVWLLH*QKLTEY
Trigger: GTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAAC...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGCCTTAACTGAGGTTTaGGTCATTGGCTTTTGCATG +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYALTEV*VIGFCM
Trigger: CATGCAAAAGCCAATGACCAAAACCTCAGTTAAGGC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGCCGTTGCTTTGTGCTaGGTCCATTTAGAGTGTTTT +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYAVALC*VHLECF
Trigger: AAAACACTCTAAATGGACCAAGCACAAAGCAACGGC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATTCTTTCATGCCAACTTaGAAAGGGTTTCGGTCATCC +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYSFMPT*KGFRSS
Trigger: GGATGACCGAAACCCTTTCAAAGTTGGCATGAAAGA...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp CAACATACTTGTCTCTCTGGTCAATTTCAGAAGGTTCTCCAAGTTTGGCTTCTACATGAAGGGCTACAGTaGTTAGATTGTAGAAAGTCT +
Preference number: 5 (lower is better)
Translates to: QHTCLSGQFQKVLQVWLLHEGLQ*LDCRKS
Trigger: AGACTTTCTACAATCTAACAACTGTAGCCCTTCATG...TAGAAGCCAAACTTGGAGAACCTTCTGAAATTGACCAGAGAGACAAGTATGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAAGCCCTGTTGCTCTGCAGTTTGACACCATTTAAATTCGTTTCCAGGATCTTACTGAATCCAAATGCCTaGCTGCTTTTAATGTTTCTT +
Preference number: 5 (lower is better)
Translates to: EALLLCSLTPFKFVSRILLNPNA*LLLMFL
Trigger: AAGAAACATTAAAAGCAGCAAGGCATTTGGATTCAG...TAAGATCCTGGAAACGAATTTAAATGGTGTCAAACTGCAGAGCAACAGGGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACAGTACAAACAGGGCATaGTACACCCATTCTAAAAGC +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHSTNRA*YTHSKS
Trigger: GCTTTTAGAATGGGTGTACAATGCCCTGTTTGTACT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp CAACATACTTGTCTCTCTGGTCAATTTCAGAAGGTTCTCCAAGTTTGGCTTCTACCCATAATTCTTAAGTaGGACTTCGGCATGAATTTT +
Preference number: 5 (lower is better)
Translates to: QHTCLSGQFQKVLQVWLLPIILK*DFGMNF
Trigger: AAAATTCATGCCGAAGTCCAACTTAAGAATTATGGG...TAGAAGCCAAACTTGGAGAACCTTCTGAAATTGACCAGAGAGACAAGTATGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCTCAATTCTTCTCAGTaGAGAGGTATACTCCTCAAG +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYLNSSQ*RGILLK
Trigger: CTTGAGGAGTATACCTCTCAACTGAGAAGAATTGAG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TTATCAATAATTTCATCCAGGGTGAGCAAAACTGTTAGCAGTTCTCCCAAGTGCAATAAATCTCCCCATTaGAATTTGGCAATCACCTTC +
Preference number: 5 (lower is better)
Translates to: LSIISSRVSKTVSSSPKCNKSPH*NLAITF
Trigger: GAAGGTGATTGCCAAATTCAAATGGGGAGATTTATT...GCACTTGGGAGAACTGCTAACAGTTTTGCTCACCCTGGATGAAATTATTGATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACGATTTCAGTAACCTTTaGTACATAGTCCAGTGGTCT +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHDFSNL*YIVQWS
Trigger: AGACCACTGGACTATGTACAAAAGGTTACTGAAATC...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TGGACAGATTTCAGTAACCTTTTGTACATAGTCCAGTGGTCTTTCAGTGTGATAGAGAGAATCAAATTGTaGTTCTATACAGGCCTGGAA +
Preference number: 5 (lower is better)
Translates to: WTDFSNLLYIVQWSFSVIERIKL*FYTGLE
Trigger: TTCCAGGCCTGTATAGAACAACAATTTGATTCTCTC...TATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CAA 90 bp CAACATACTTGTCTCTCTGGTCAATTTCAGAAGGTTCTCCAAGTTTGGCTTCTAGTTTGGCTTCTACATTaGCAAAAATTGACCGAATAC +
Preference number: 5 (lower is better)
Translates to: QHTCLSGQFQKVLQVWLLVWLLH*QKLTEY
Trigger: GTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAAC...TAGAAGCCAAACTTGGAGAACCTTCTGAAATTGACCAGAGAGACAAGTATGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp TCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTCAAATTCCAACATACTaGTCTCTCTGGTCAATTTCA +
Preference number: 5 (lower is better)
Translates to: SFHPVIALLASARTFQMAQIPTY*SLWSIS
Trigger: TGAAATTGACCAGAGAGACAAGTATGTTGGAATTTG...AGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAATGAAGAGCCTGATGTaGAAGGTGCTGTGTTATATG +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQMKSLM*KVLCYM
Trigger: CATATAACACAGCACCTTCAACATCAGGCTCTTCAT...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATATGAAGAGCCTGATGTaGAAGGTGCTGTGTTATATG +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYMKSLM*KVLCYM
Trigger: CATATAACACAGCACCTTCAACATCAGGCTCTTCAT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATACAGTCACATTGTGTTaGGACTCGTTCTCTAAGTTC +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYTVTLC*DSFSKF
Trigger: GAACTTAGAGAACGAGTCCAAACACAATGTGACTGT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp TCATTCCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTTCTGATGCCTCGATaGAATTTTTCTGCTCTATCA +
Preference number: 5 (lower is better)
Translates to: SFHPVIALLASARTFQMAFLMPR*NFSALS
Trigger: TGATAGAGCAGAAAAATTCAATCGAGGCATCAGAAA...AGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGGAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGGAGATGTATATTCTTaGGCCTTCGAAATTCTGGAG +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYGDVYS*AFEILE
Trigger: CTCCAGAATTTCGAAGGCCAAAGAATATACATCTCC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACTCAGACAGGTCTCCATaGCTTGTTTTAGTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHSDRSP*LVLVSS
Trigger: AGAAGAAACTAAAACAAGCAATGGAGACCTGTCTGA...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAAGTACAAACAGGGCATaGTACACCCATTCTAAAAGC +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQSTNRA*YTHSKS
Trigger: GCTTTTAGAATGGGTGTACAATGCCCTGTTTGTACT...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCTGTTGCTCTGCAGTTaGACACCATTTAAATTCGTT +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHLLLCS*TPFKFV
Trigger: AACGAATTTAAATGGTGTCAAACTGCAGAGCAACAG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp CCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATCTGTTGCTCTGCAGTTaGACACCATTTAAATTCGTT +
Preference number: 5 (lower is better)
Translates to: PSSNCPSSFSKNFSNGFNLLLCS*TPFKFV
Trigger: AACGAATTTAAATGGTGTCAAACTGCAGAGCAACAG...ATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp CATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATTGATTTCAGTAACCTTTaGTACATAGTCCAGTGGTCT +
Preference number: 5 (lower is better)
Translates to: HPVIALLASARTFQMALIDFSNL*YIVQWS
Trigger: AGACCACTGGACTATGTACAAAAGGTTACTGAAATC...AATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGATTTCAGTAACCTTTaGTACATAGTCCAGTGGTCT +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYDFSNL*YIVQWS
Trigger: AGACCACTGGACTATGTACAAAAGGTTACTGAAATC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATCCTGAATTCCAAATTTaGAAGGATTGTGATGGACAG +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYPEFQI*KDCDGQ
Trigger: CTGTCCATCACAATCCTTCAAAATTTGGAATTCAGG...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAACCTGAATTCCAAATTTaGAAGGATTGTGATGGACAG +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQPEFQI*KDCDGQ
Trigger: CTGTCCATCACAATCCTTCAAAATTTGGAATTCAGG...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGAGAGAATCAAATTGTaGTTCTATACAGGCCTGGAA +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYERIKL*FYTGLE
Trigger: TTCCAGGCCTGTATAGAACAACAATTTGATTCTCTC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACATTGAGAGAATCAAATaGTTGTTCTATACAGGCCTG +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHIERIK*LFYTGL
Trigger: CAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATGAAGGTTCTCCAAGTTaGGCTTCTACATTTGCAAAA +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYEGSPS*ASTFAK
Trigger: TTTTGCAAATGTAGAAGCCAAACTTGGAGAACCTTC...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AAGGATCATCAGTTATACTGTACACTGAGAGTACATAAAACACTTGTGCCTCACCAAATTCCAACATACTaGTCTCTCTGGTCAATTTCA +
Preference number: 5 (lower is better)
Translates to: KDHQLYCTLRVHKTLVPHQIPTY*SLWSIS
Trigger: TGAAATTGACCAGAGAGACAAGTATGTTGGAATTTG...GTGAGGCACAAGTGTTTTATGTACTCTCAGTGTACAGTATAACTGATGATCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp CCATCCAGTAATTGCCCTTCTAGCTTCAGCAAGAACTTTTCAAATGGCTTTAATCTGAATCCAAATGCCTaGCTGCTTTTAATGTTTCTT +
Preference number: 5 (lower is better)
Translates to: PSSNCPSSFSKNFSNGFNLNPNA*LLLMFL
Trigger: AAGAAACATTAAAAGCAGCAAGGCATTTGGATTCAG...ATTAAAGCCATTTGAAAAGTTCTTGCTGAAGCTAGAAGGGCAATTACTGGATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAATTAAAGTATTTATCTaGGGCTGGCAAGTTACCCTG +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQIKVFI*GWQVTL
Trigger: CAGGGTAACTTGCCAGCCCAAGATAAATACTTTAAT...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAAAATAAATCTCCCCATTaGAATTTGGCAATCACCTTC +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQNKSPH*NLAITF
Trigger: GAAGGTGATTGCCAAATTCAAATGGGGAGATTTATT...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GAGTACATAAAACACTTGTGCCTCACCTCTAGTATCAAAGCCATCTTCATATATACAGATACTCCTCCATaGAGAGAATCAAATTGTTGT +
Preference number: 5 (lower is better)
Translates to: EYIKHLCLTSSIKAIFIYTDTPP*RESNCC
Trigger: ACAACAATTTGATTCTCTCAATGGAGGAGTATCTGT...ATATATGAAGATGGCTTTGATACTAGAGGTGAGGCACAAGTGTTTTATGTACTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp AACTTCACTTCAAATAGAAACATCTTGTACCCTCAAGTCCAGGCAAAAATCCAATTTCTGATGCCTCGATaGAATTTTTCTGCTCTATCA +
Preference number: 5 (lower is better)
Translates to: NFTSNRNILYPQVQAKIQFLMPR*NFSALS
Trigger: TGATAGAGCAGAAAAATTCAATCGAGGCATCAGAAA...TTGGATTTTTGCCTGGACTTGAGGGTACAAGATGTTTCTATTTGAAGTGAAGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000332180.10
ENST00000550053.5
CDS-3UTR CAA 90 bp GTACATAGTCCAGTGGTCTTTCAGTGTGATATGATTATCAATAATTTCATCCAGAATAAATCTCCCCATTaGAATTTGGCAATCACCTTC +
Preference number: 5 (lower is better)
Translates to: VHSPVVFQCDMIINNFIQNKSPH*NLAITF
Trigger: GAAGGTGATTGCCAAATTCAAATGGGGAGATTTATT...CTGGATGAAATTATTGATAATCATATCACACTGAAAGACCACTGGACTATGTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000547404.1
ENST00000550053.5
CDS CAA 90 bp CACTGCTCCATCCCTAGAGCCAACATGTCCAATCTGGCTGATGAGTaGCCTGAATTGATCAAGGTAGCTCTGTCCCTCAGGTGTTACTCC +
Preference number: 6 (lower is better)
Translates to: HCSIPRANMSNLADE*PELIKVALSLRCYS
Trigger: GGAGTAACACCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGACATGTTGGCTCTAGGGATGGAGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS TCA 72 bp TGTCTGCATCTTCCCCCACCTAGAGTTCAAGATCCATaGGTACAGCCTTTGTCTTCTTCACTGCTCCATCCC +
Preference number: 6 (lower is better)
Translates to: CLHLPPPRVQDP*VQPLSSSLLHP
Trigger: GGGATGGAGCAGTGAAGAAGACAAAGGCTGTACTCATGGATCTTGAACTCTAGGTGGGGGAAGATGCAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS CAA 72 bp GCCAACATGTCCAATCTGGCTGATGAGTTGCCTGAATaGATCAAGGTAGCTCTGTCCCTCAGGTGTTACTCC +
Preference number: 6 (lower is better)
Translates to: ANMSNLADELPE*IKVALSLRCYS
Trigger: GGAGTAACACCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGACATGTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS CAA 72 bp ATCCCTAGAGCCAACATGTCCAATCTGGCTGATGAGTaGCCTGAATTGATCAAGGTAGCTCTGTCCCTCAGG +
Preference number: 6 (lower is better)
Translates to: IPRANMSNLADE*PELIKVALSLR
Trigger: CCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGACATGTTGGCTCTAGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS CAA 90 bp ATCCCTAGAGCCAACATGTCCAATCTGGCTGATGAGTTGCCTGAATaGATCAAGGTAGCTCTGTCCCTCAGGTGTTACTCCAAGTTTTCT +
Preference number: 6 (lower is better)
Translates to: IPRANMSNLADELPE*IKVALSLRCYSKFS
Trigger: AGAAAACTTGGAGTAACACCTGAGGGACAGAGCTACCTTGATCAATTCAGGCAACTCATCAGCCAGATTGGACATGTTGGCTCTAGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS GCA 72 bp TTCAAGATCCATGAGTACAGCCTTTGTCTTCTTCACTaGTCCATCCCTAGAGCCAACATGTCCAATCTGGCT +
Preference number: 6 (lower is better)
Translates to: FKIHEYSLCLLH*SIPRANMSNLA
Trigger: AGCCAGATTGGACATGTTGGCTCTAGGGATGGAGCAGTGAAGAAGACAAAGGCTGTACTCATGGATCTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS CAA 72 bp GGTATACTCCTCAAGAAATTTCCCATAATTCTTAAGTaGGACTTCGGCATGAATTTTCTGCGAGCCGTCGTC +
Preference number: 6 (lower is better)
Translates to: GILLKKFPIILK*DFGMNFLRAVV
Trigger: GACGACGGCTCGCAGAAAATTCATGCCGAAGTCCAACTTAAGAATTATGGGAAATTTCTTGAGGAGTATACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000311317.8
ENST00000332180.10
ENST00000550053.5
ENST00000620430.5
CDS GCA 72 bp TACATAGCCCATAGCATTACTATGTATTTTTCTGTCTaGATCTTCCCCCACCTAGAGTTCAAGATCCATGAG +
Preference number: 6 (lower is better)
Translates to: YIAHSITMYFSV*IFPHLEFKIHE
Trigger: CTCATGGATCTTGAACTCTAGGTGGGGGAAGATGCAGACAGAAAAATACATAGTAATGCTATGGGCTATGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000552203.1
CDS TCA 72 bp TCTCTACCTGTAGATAGACATCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGAGTTTTTCATCTTGAC +
Preference number: 6 (lower is better)
Translates to: SLPVDRHPVASE*DSWFVRVFHLD
Trigger: GTCAAGATGAAAAACTCTTACAAACCATGAATCTCACTCAGAAGCGACTGGATGTCTATCTACAGGTAGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000550036.1
CDS TCA 72 bp AAGTCATGGATATCAAATGGTAAGTCAAAGCAGATGTaGCTCTTAGGCTCCTCTCTACCTGTAGATAGACAT +
Preference number: 6 (lower is better)
Translates to: KSWISNGKSKQM*LLGSSLPVDRH
Trigger: ATGTCTATCTACAGGTAGAGAGGAGCCTAAGAGTCACATCTGCTTTGACTTACCATTTGATATCCATGACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000550036.1
CDS TCA 72 bp TCTTGCACTGTAGATAGACATCCAGTCGCTTCTGAGTaGGATTCATGGTTTGTAAGAGTTTTTCATCTTGAC +
Preference number: 6 (lower is better)
Translates to: SCTVDRHPVASE*DSWFVRVFHLD
Trigger: GTCAAGATGAAAAACTCTTACAAACCATGAATCTCACTCAGAAGCGACTGGATGTCTATCTACAGTGCAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547171.1